BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51730.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923663 jgi|Araly1|923663|scaffold_104944.1 1443 0.0
> Ahg923663 jgi|Araly1|923663|scaffold_104944.1
Length=868
Score = 1443 bits (781), Expect = 0.0
Identities = 840/869 (97%), Gaps = 1/869 (0%)
Strand=Plus/Plus
Query 61 GCTCTTGGTCACGAGGCGACTCTCACTGTGGAGTTCGATATTCAGGCAATCTCAAAAGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GCTCTTGGTCACGAGGCGACTCTCACTGTGGAGTTCGATATTCAGGCAATCTC-AAAGCT 59
Query 121 TCCACGACAAAGGTGTCAAATTTGGTCATCATGACGGAGTATAAGCAGGAGCAGGAAATG 180
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 60 TCCACGACAAAGGTGTCAAATTTAGTCATCATGACGGAGTATAAGCAGGAACAGGAGATG 119
Query 181 GAGATTGAAGCTCTTGAAGCTATACTTATGGATGAGTTTAAAGAAATTCATTCTAGTGAA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 GAGATTGAAGCTCTTGAAGCTATACTTATGGATGAGTTTAAAGAAATACATTCTAGTGAA 179
Query 241 AGTGGGCTTAATACTTCGAATCGATGCTTTCAGATTACAGTGACTCCTCAGGATGATGAA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 AGTGGGCTTAATACTTCGAATCGATGCTTTCAGATCACAGTGACTCCTCAGGATGATGAA 239
Query 301 CTGGAGGAATTAGCAATCCCACCAGTTCAGCTGGCTTTGGTTTTCTCGCACACAGAAAAT 360
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGAGGACTCAGCAATCCCACCAGTTCAGCTGGCTTTGGTTTTCTCGCACACAGAAAAT 299
Query 361 TACCCGGACGAGGCTCCGCTTTTGGATGTTAAAAGTATTCGAGGAATCCATGTTAGTGAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TACCCGGACGAGGCTCCGCTTTTGGATGTTAAAAGTATTCGAGGAATCCATGTTAGTGAC 359
Query 421 CTCACCATCTTGAAAGAGAAGCTTGAACAAGAGGCATCTGAAAATCTAGGTATGGCCATG 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 CTCACCATCTTGAAAGAGAAGCTTGAACAAGAGGCATCTGAAAATCTTGGTATGGCCATG 419
Query 481 ATCTATACACTGGTCTCATCAGCAAAGGACTGGTTGTCTGAACACTATGGGCAAGATGAT 540
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 ATCTACACGCTGGTCTCATCAGCAAAGGACTGGTTGTCTGAACAATATGGGCAAGATGAT 479
Query 541 GCAGCTGAATTTGCCGAAGTAGAAGCTGCCAAAGAGGATGAGGTAATTGTCCCTCATGGA 600
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCAGCTGACTTAGCCGAAGAAGAAGCTGCCAAAGAGGATGAGGTAATTGTCCCTCATGGA 539
Query 601 GAACCTGTTACGCTAGAGACATTTTTGGCGTGGAGAGAGAGATATGAGGCAGAGCTTGCA 660
|||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 540 GAACCTGTTACGCTGGAGACATTTTTGGCATGGAGAGAGAGATTTGAAGCAGAGCTTGCG 599
Query 661 CTTGAGCGAGCCAAGTTGATGCCGGAGTCTGCTCTTACAGCACCTAAGGAGAAGAAGCTT 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTGAGCGAGCCAAGCTGATGCCGGAGTCTGCTCTTACAGCACCTAAGGAGAAGAAGCTT 659
Query 721 ACAGGAAGACAGTGGTTCGAAAGTGGGAGAGGGAGAGGAACGGTGGTCATTGCTGATGAG 780
||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 660 ACAGGAAGACAGTGGTTTGAAAGTGGCAGAGGGAGAGGAACGGTGGTCGCTGCTGATGAG 719
Query 781 GAAGATGAGGAGGAAGATGAGGAAGACATCGACTTTGAAGACGAAGACTTTGAAGATGAC 840
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GAAGATGAGGAGGAAGATGAGGAAGACATTGACTTTGAAGACGAAGACTTTGAAGATGAC 779
Query 841 GAAGAAGACATGCTTGAGCACTATTTGGCGGAGAAATCTGATTCTTCCGCTCCCCCAACA 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 780 GAAGAAGACATGCTTGAGCACTATTTGGCGGAGAAATCTGATTCTTCCGCTCCCTCATCA 839
Query 901 AGGACATGAAGCTAAGGGAGAGCCTTATA 929
|||||||||||||||||||||||||||||
Sbjct 840 AGGACATGAAGCTAAGGGAGAGCCTTATA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5