BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51740.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923664 jgi|Araly1|923664|scaffold_104945.1 1583 0.0
> Ahg923664 jgi|Araly1|923664|scaffold_104945.1
Length=974
Score = 1583 bits (857), Expect = 0.0
Identities = 936/975 (96%), Gaps = 2/975 (0%)
Strand=Plus/Plus
Query 200 GATCTGAATTTTGGGTACAAGATGTCGAGATTCAGAGACAGGACGGAGGATTTCAAGGAT 259
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GATCTGAATTTTGTGTACAAGATGTCGAGATTCAGAGACAGGACAGAGGATTTCAAGGAT 60
Query 260 TCTGTTCGGAATTCCGCTGTTTCGATAGGTTATAATGAGTCTAAAGTGGCATCAACAATG 319
|||||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 TCTGTTCGAAAATCGGCTGTTTCGATTGGTTATAATGAGTCTAAAGTGGCATCGACAATG 120
Query 320 GCGTCTTTTATTATACATAAGCCAAAGGAGAGATCGCCTTTCACGAAAGCTGCTTTCAAA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGTCTTTTATTATACATAAGCCAAAGGAGAGATCGCCTTTCACGAAAGCTGCTTTCAAA 180
Query 380 ACGCTTGATAGCATCAAGGAGTTGGAACTGTTTATGTTGAAGCATCGAAAGGATTATGTT 439
||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 181 ACGCTGGATAGCATCAAGGAGTTGGAACAGTTTATGTTGAAGCATCGGAAGGATTATGTT 240
Query 440 GATCTGCACCGGACTACAGAACAGGAAAAGGATAGTATTGAACAAGAAGTTGCTGCTTTT 499
||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||
Sbjct 241 GATCTGCACCGGACTACTGAACAGGAAAAGGATAGCATTGAACAAGAAATTACTGCTTTT 300
Query 500 ATTAAAGCTTGCAAAGAACAGATCGATATTCTCATAAACAGTATTAGAAATGAAGAAGCA 559
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 ATTAAAGCTTGCAAAGAACAGATCGATATTCTCAAAAACAGTATTAGAAATGAAGAAGCA 360
Query 560 AACTCCAAAGGATGGCTTGGCCTCCCCGCAGATAACTTCAATGCTGATTCTATAGCACAC 619
||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 361 AACTCTAAAGGATGGCTTGGCCTTCCCGCAGATAACTTCAATGCTGATACTATAGCACAC 420
Query 620 AAACATGGAGTGGTTTTGATTCTGAGTGAGAAACTTCATTCAGTCACTGCCCAGTTTGAT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACATGGAGTGGTTTTGATTCTGAGTGAGAAACTTCATTCAGTCACTGCCCAGTTTGAT 480
Query 680 CAGCTTAGAGCTACTCGTTTCCAAGATATTATAAACAGAGCTATGCCGAGAAGAAAACCT 739
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 481 CAGCTTAGAGCTACTCGTTTCCAAGATATTATTAACAGAGCTATGCCAAGAAGAAAACCT 540
Query 740 AAGAGGGTCATAAAGGAAGCTACCCCAATTAAT-ACAACTCTGGGAAATTCGGAGTCCAT 798
|||||| ||||||||||||||| |||| | || |||||||||| |||||||||||||||
Sbjct 541 AAGAGGATCATAAAGGAAGCTAATCCAA-TCATCACAACTCTGGCAAATTCGGAGTCCAT 599
Query 799 AGAACCGGATGAAATCCAGGCCCAACCTCGTAGATTACAACAACAACAACTTCTAGACGA 858
| |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 AAAACCGGGTGAAATTCAGGCCCAACCTCGTAGAGTACAACAACAACAACTTCTAGACGA 659
Query 859 TGAAACACAAGCCCTTCAGGTAGAGCTAAGTAATCTTTTAGATGGTGCTAGGCAGACAGA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAAACACAAGCCCTTCAGGTAGAGCTAAGTAATCTTTTAGATGGTGCTAGGCAGACAGA 719
Query 919 AACTAAGATGGTGGAGATGTCTGCATTAAACCACTTGATGGCAACTCATGTTCTGCAGCA 978
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 720 GACTAAGATGGTGGAGATGTCTGCATTGAACCACTTGATGGCAACTCATGTTCTTCAACA 779
Query 979 AGCCCAACAGATAGAGTTTCTTTATGACCAGGCAGTTGAGGCAACAAAGAACGTGGAGCT 1038
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 AGCCCAACAGATAGAGTTTCTTTATGACCAGGCGGTTGAGGCAACAAAGAACGTGGAGCT 839
Query 1039 TGGAAACAAAGAGCTTTCTCAAGCAATCCAACGAAACAGCAGCAGCAGAACCTTTCTCTT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGGAAACAAAGAGCTTTCTCAAGCAATCCAACGAAACAGCAGCAGCAGAACCTTTCTCTT 899
Query 1099 ACTGTTTTTCTTCGTCCTTACTTTCTCCGTCTTGTTCTTGGATTGGTACAGTTAAAAAAC 1158
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 900 ACTGTTTTTCTTCGTCCTTACTTTCTCCGTTTTGTTCTTGGATTGGTACAGTTAAGAGAC 959
Query 1159 CATTCTCCAACAACA 1173
|||||||||||||||
Sbjct 960 CATTCTCCAACAACA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5