BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51745.1
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474292 jgi|Araly1|474292|fgenesh2_kg.1__4246__AT1G51745.2 2447 0.0
> Ahg474292 jgi|Araly1|474292|fgenesh2_kg.1__4246__AT1G51745.2
Length=2496
Score = 2447 bits (1325), Expect = 0.0
Identities = 1570/1684 (93%), Gaps = 33/1684 (2%)
Strand=Plus/Plus
Query 381 TTTGTTGTAATGGAGAGTAATGATGACCGAAACTTGGAGGCTATTAATGCGTCAGTAGGA 440
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 328 TTTG-TGTAATGGAGAGTAATGATGACCAAAACTTGGAGGCTATTAATGCGTCAGTAGGA 386
Query 441 AGATTGGTATGGGTTCGCCGCCGTAACGGGTCTTGGTGGCCTGGACAGACTTTGGTTCAT 500
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 387 AGATTGGTATGGGTTCGTCGCCGCAACGGGTCTTGGTGGCCTGGACAGACTCTGGTTCAT 446
Query 501 GACCAAGTTCCTGACAACTCTTTGGTTGGTCCCAAAGTCGGCACTCCAATAAAGCTTCTA 560
|||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 447 GACCAAGTTCCTGATAACTCTTTGGTTTCTCCAAAAGTCGGTACTCCAATAAAGCTTCTA 506
Query 561 GGTCGTGACGATGTTAGC--GT--GGATTGGTATATTCTTGAAAATTCCAAGACGGTGAA 616
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 507 GGTCGTGACGATGTTAGCGTGTGAGGATTGGTATACTCTTGAAAATTCCAAGACGGTGAA 566
Query 617 GGCGTTTCGTTGTGGAGAGTATGATACTTGCATTGAGAAGGCAAAGGCGAGCTCTAGTAA 676
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GGCGTTTCGTTGTGGAGACTATGATACTTGCATTGAGAAGGCAAAGGCGAGCTCTAGTAA 626
Query 677 GAAGAGGTCTGGCAAGTGTACTCTCCGAGAAGATGCCATTAACAATGCTCTCAAGATTGA 736
||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 627 GAAGAAGACTGGCAAGTGTACTCGCCGAGAAGATGCCATTAACAATGCTCTCGAGATTGA 686
Query 737 GAATGAACATCTTGCAAAAGAAGATGATAATTTGTGTAATTTATCTGGTGAGGAAGATTC 796
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 687 GAATGAACATCTTGCAAAAGAAGAAGATAATTTGTGTACTTTATCTGGTGAGGAAGATTC 746
Query 797 TAAGAGGTGTCTCTCTGGCAAAGAGGATGAAGATTCGGGCTCCTCTGATGCAGAAGAGAC 856
||| |||||||| |||||||| |||||||| |||| ||| ||||||||||||| ||||||
Sbjct 747 TAAAAGGTGTCTTTCTGGCAATGAGGATGAGGATTTGGGATCCTCTGATGCAGGAGAGAC 806
Query 857 TGAAGATGATGAGTTGG-CTTCAGCGCCAGAGCAATTGCAATCCAGTATATCTTCCCAAG 915
||||||||| | |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 807 TGAAGATGA--A-TTGGAC-TCAGCGCCAGAGCAATTGCAATCCAGTATGTCTTCCCAAG 862
Query 916 AAATGAATAACGTTGGAGCTTCTAAAGTGCAGTCAAAGAGAAGAAGAACACCAAATGACT 975
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 863 AAATGAATAACGTTGGAGCTTCTAAGGTGCAGCCAAAGAGAAGAAGAACACCAAATGACT 922
Query 976 CGGAAGATGATGGGACTGAAGGGGTCAAGCGAATGAGAGGGCTTGAGGATATTGGGAAAG 1035
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 923 CGGAAGATGATGGGACTGAAGGAGTCAAGCGAATGAGAGGGCTTGAGGATATTGGGAAAG 982
Query 1036 AACAGGCTGGTGGTATAGTCGAGCATAAGCAAGATTTGGATTTGATCTGTGCTGTAGGCC 1095
|||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| | |
Sbjct 983 AACAGGCTGGTGCTATAGTCGAGCATAAGCAAGAATTGGGTTTGATCTGTGCTGTAAGTC 1042
Query 1096 TCAGTGATTCAGTGTCGAATGGAAATACTATTGCCAATGGGAACAAGGTATGCT-CCC-- 1152
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 1043 TCAGTGATTCAGTGTCGAATGGAAATATTATTGCCAATGGGAACAAGGTGTGCTCCCCGT 1102
Query 1153 CGTCATC-GT-----TAAAAA--G-A-AA-TGTT-A--G----TGAGTGCTCTAAAAGGA 1194
||||||| | ||||| | | || | || | | |||||||||||||||||
Sbjct 1103 CGTCATCACTAAAAAGAAAAAGGGCACAAGTCTTAAGTGCTCATGAGTGCTCTAAAAGGA 1162
Query 1195 AAAACCGACGCCGCCAATTGACAAAGGTTTTAGAGAGTACAGCTATGGTCTCTGTCCCTG 1254
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1163 AAAACCGACGCCGGCAATTGACAAAGGTGTTAGAGAGTACAGCTATGGTCTCTGTCCCTG 1222
Query 1255 TTACCTGTGACCAAG-GTGTCAGTTTGGATTGTCAAGGGATTTATGACAGCAAAGTATCA 1313
|||||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1223 TTACCTGTGACC-AGCTTGTCAGTTTGGATTGTGAAGGGATTTATGACAGCAAAGTACCA 1281
Query 1314 GGAATGGAGTCTGTTGAATCCATGAAAAGCGTTTCTGTTGTAATCAACAATAACTCGGAC 1373
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1282 GGAATGGAATCTGTTGAATCCATGAAAAGCGTATCTGTTGTAATCAACAATAACTCGGAC 1341
Query 1374 AGTACCGGGGTGTCATGTGAGGATGCTTATGAAAATGTTGTCGGAGCCTCCCATAACAAC 1433
|| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AGCACCGGGATTTCGTGTGAGGATGCTTATGAAAATGTTGTCGGAGCCTCCCATAACAAC 1401
Query 1434 AAGGCAAAAGACAGTGAGATTTCCAGCATATCTGTTTCCGCAGAGGATGATTCTTCTGAC 1493
||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1402 AAGGCAAGAGACAGTGAGATTTCCAGCATATCAGTTTCGGCAGAGGATGATTCTTCTGAC 1461
Query 1494 AGATTATTTGATGTTCCACTAACCGGAGAAGAAAACCACTCAGAAGGCTTTCCGGCAGCT 1553
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1462 AGATTATTTGATGTTCCACTAACTGGAGAAGAAAACCACTCAGAAGGCTTTCCGGCAACT 1521
Query 1554 TGTAGAATCTCCTCACCAAGGAAAGCTCTTGTTACTGATTTAACCAGGCGGTGTGGTCGG 1613
||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1522 TGTAGAATCTCCTCATCAAGGAAAGCTCTTGTTACTGATTTAACCAGGCGGCATGATCGG 1581
Query 1614 AATAGTCACAATGTGTTTGTTAAGAATGAGGCAAGTAACGGATCAGCTTGTACAAGTCCA 1673
| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1582 AGTAGTCACAATGTGTTTGTTAAGAATGAGGGAAGTAATGGATCAGCTTGTACAAGTCCA 1641
Query 1674 CCAGCTTCAGAACCTGTCAACTGTATTTTGAGCGGGATTGAGAAGAACACTTCTAAGTGG 1733
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1642 CCAGCTTCAGAACCTGTCAACTGTAATTTGAGCGGGATTGAGAAGAGCACTTCTAAGTGG 1701
Query 1734 CAGCTGAAAGGAAAGAGGAACTCGAGGCAGATGAGTAAGAAACAAGAAGAGAGAAGAAAT 1793
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 AAGCTAAAAGGAAAGAGAAACTCGAGGCAGATGAGTAAGAAACAAGAAGAGAGAAGAAAT 1761
Query 1794 GTGTACGGCGAAGAAGCTAATAACAACAGTTCTACGCCTCATTCTACGCTGTATGAGGTG 1853
|||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 1762 GTGTACGGTGAAGAAGCTAATAACAACAGTTGTACGCCTCATTCTGCGCTGTACGAGGTG 1821
Query 1854 AAGATTGAGGTAAAAGCAAGCTATACCAAACCCCGAGTTCCACTGGTGTCTCGTATGAGT 1913
|| |||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 1822 AAAATTGAGGTAAAAGCAAACTATAACAAACCCCGTGTTCCGCTGGTGTCTCGTATGAGT 1881
Query 1914 GAATTGAGTGGCAAAGCTATTGTTGGACATCCTTTAAGTGTTGAAATCTTGGAAGAAGAC 1973
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1882 GAATTGAATGGCAAAGCTATTGTTGGGCATCCTTTAAGTGTTGAAATCTTGGAAGAAGAC 1941
Query 1974 TACTCCAATGGTATGGTGATGCCTCCAGTTGTTGCGAAGGCGAAGTCATTGCCCAAAAAG 2033
|||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 1942 TACTCCAACGGTATGGTGATGCCTCAAGTTGTTGTGAAGGCGAAGTCATTGTCCAAAAAG 2001
Query 2034 AATG 2037
||||
Sbjct 2002 AATG 2005
Score = 479 bits (259), Expect = 5e-134
Identities = 392/451 (87%), Gaps = 30/451 (7%)
Strand=Plus/Plus
Query 2033 GAATGAAGCAAGAAGCAGACAACAGAGAAGGCAAAGGAAACGGTTGTAGCTTGTATACCG 2092
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2063 GAAAGAAGCAAGAAGCAGACAACAGAAAAGGCAAAGGAAACGGTTGTAGCTTGTATACCG 2122
Query 2093 TTGAAAGTAGTTTTCAGTAGGATAAATGAAGTGTTGAAAGGGTCAGCAAGACAAACACAG 2152
||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 2123 TTGAAAGTAGTTTTCAGCCGGATAAACGAAGTGCTGAAAGGCTCAGCAAGACAAACACAG 2182
Query 2153 CACCGAGCATTGCCTTCTGCAGCCAAAACATGAGAGACAGAGAAGATAGATTTTTGGCTG 2212
|||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 2183 CACCGAGCATTGCCATCTGCAGCCAAAATATGAGAGAGAGAGAAGATAAATTTTTGGCTG 2242
Query 2213 GCTTTACGtttttt-t----GTTTTCTCGTCATCTATCTGTCTGGGTTTCGAAGCTTAAA 2267
|||||||||||||| | |||||| | ||||| ||||| || ||||| ||||| ||||
Sbjct 2243 GCTTTACGTTTTTTGTTTTTGTTTTCCCTTCATCCATCTGCCTTGGTTTTGAAGCATAAA 2302
Query 2268 CTGAGATGAAAATAGACTG-T--TTTGGAGAAGTTGGAAGTGAGCAAATGTAAATATATC 2324
||||||||||||||| ||| | |||| |||||||||||||||| ||||||| |||||||
Sbjct 2303 CTGAGATGAAAATAGGCTGCTGCTTTGAAGAAGTTGGAAGTGAGTAAATGTATATATATC 2362
Query 2325 AGTAGTTAGTGGTTGAGATGTAAAACTGATAAAAAAGCTTGAGATTAGGTGGGAGTGATA 2384
||||||||||||||||| || | ||||| || ||||||||||||||| |||
Sbjct 2363 AGTAGTTAGTGGTTGAG--GT------G-TAAAA---CT-GAGATTAGGTGGGAGGGAT- 2408
Query 2385 TGAGATTG-TTGGCTGCTTAGAAAGAATTTTCCTTGTTTCAGGTAACTCAAAATTGTTTG 2443
|||| | ||| ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2409 -GAGAA-GATTGA-TGCTTAGAAAGAATTTTGCTTGTTTCAGGTAACTCATTATTGTTTG 2465
Query 2444 TTT-TCTT---GTACTCTCAAGTTCTCTTGT 2470
||| | || ||||||||||||||||||||
Sbjct 2466 TTTGTTTTTTTGTACTCTCAAGTTCTCTTGT 2496
Score = 307 bits (166), Expect = 2e-82
Identities = 267/311 (86%), Gaps = 26/311 (8%)
Strand=Plus/Plus
Query 1 GACctcctcttctctctcagtctctctctctctctccatccaaaacaagccctttctctc 60
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 1 GACCTCCTCTTCTCTCTC-G---GTCTCTCTCTCTCCATCCAAAACCAGCCCTTTCTCTC 56
Query 61 tcctctc-c-tct--gct-ct-ctct--gtctTCCATTCATTAAACCGCCGGAGCAAAAA 112
||||||| | ||| ||| || |||| |||||||||||| |||||||||||||||||||
Sbjct 57 TCCTCTCTCCTCTCTGCTGCTGCTCTCTGTCTTCCATTCACTAAACCGCCGGAGCAAAAA 116
Query 113 CCCTTTTCTCACAACCCGAAGACA-AATGCGGTC----CT-AATGCTATCTGATTCATAG 166
||||||||||| |||| |||| | ||||||||| || |||||||| |||||||| |
Sbjct 117 CCCTTTTCTCAGAACCAAAAGA-AGAATGCGGTCTTGTCTTAATGCTATTTGATTCATTG 175
Query 167 ACAGATAGAAACCTCCTAAC-GCCGCAGAGTAGT-GAAAAG-AGGATTCAAGAAGGGGGC 223
|||||||||||||||||||| | | | | || | | |||||||||||||||| |
Sbjct 176 ACAGATAGAAACCTCCTAACAGT-G-ATTTTTGTTGGTT-GCAGGATTCAAGAAGGGG-C 231
Query 224 ATACTTTTGTTTAGTGAAAGAAAGTCACTTCATTGAGATTTTCAAATTATAAAGTTTTGA 283
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 232 ATACTTTTGTTTAGTGAAAGAAAGTCACTTCATTGAGATTTCCAGATTATAAAGTTTTGA 291
Query 284 TTTTTAGGTCA 294
|||||||||||
Sbjct 292 TTTTTAGGTCA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5