BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51745.1 Length=2493 Score E Sequences producing significant alignments: (Bits) Value Ahg474292 jgi|Araly1|474292|fgenesh2_kg.1__4246__AT1G51745.2 2447 0.0 > Ahg474292 jgi|Araly1|474292|fgenesh2_kg.1__4246__AT1G51745.2 Length=2496 Score = 2447 bits (1325), Expect = 0.0 Identities = 1570/1684 (93%), Gaps = 33/1684 (2%) Strand=Plus/Plus Query 381 TTTGTTGTAATGGAGAGTAATGATGACCGAAACTTGGAGGCTATTAATGCGTCAGTAGGA 440 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 328 TTTG-TGTAATGGAGAGTAATGATGACCAAAACTTGGAGGCTATTAATGCGTCAGTAGGA 386 Query 441 AGATTGGTATGGGTTCGCCGCCGTAACGGGTCTTGGTGGCCTGGACAGACTTTGGTTCAT 500 ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 387 AGATTGGTATGGGTTCGTCGCCGCAACGGGTCTTGGTGGCCTGGACAGACTCTGGTTCAT 446 Query 501 GACCAAGTTCCTGACAACTCTTTGGTTGGTCCCAAAGTCGGCACTCCAATAAAGCTTCTA 560 |||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||| Sbjct 447 GACCAAGTTCCTGATAACTCTTTGGTTTCTCCAAAAGTCGGTACTCCAATAAAGCTTCTA 506 Query 561 GGTCGTGACGATGTTAGC--GT--GGATTGGTATATTCTTGAAAATTCCAAGACGGTGAA 616 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 507 GGTCGTGACGATGTTAGCGTGTGAGGATTGGTATACTCTTGAAAATTCCAAGACGGTGAA 566 Query 617 GGCGTTTCGTTGTGGAGAGTATGATACTTGCATTGAGAAGGCAAAGGCGAGCTCTAGTAA 676 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 567 GGCGTTTCGTTGTGGAGACTATGATACTTGCATTGAGAAGGCAAAGGCGAGCTCTAGTAA 626 Query 677 GAAGAGGTCTGGCAAGTGTACTCTCCGAGAAGATGCCATTAACAATGCTCTCAAGATTGA 736 ||||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 627 GAAGAAGACTGGCAAGTGTACTCGCCGAGAAGATGCCATTAACAATGCTCTCGAGATTGA 686 Query 737 GAATGAACATCTTGCAAAAGAAGATGATAATTTGTGTAATTTATCTGGTGAGGAAGATTC 796 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 687 GAATGAACATCTTGCAAAAGAAGAAGATAATTTGTGTACTTTATCTGGTGAGGAAGATTC 746 Query 797 TAAGAGGTGTCTCTCTGGCAAAGAGGATGAAGATTCGGGCTCCTCTGATGCAGAAGAGAC 856 ||| |||||||| |||||||| |||||||| |||| ||| ||||||||||||| |||||| Sbjct 747 TAAAAGGTGTCTTTCTGGCAATGAGGATGAGGATTTGGGATCCTCTGATGCAGGAGAGAC 806 Query 857 TGAAGATGATGAGTTGG-CTTCAGCGCCAGAGCAATTGCAATCCAGTATATCTTCCCAAG 915 ||||||||| | |||| | ||||||||||||||||||||||||||||| |||||||||| Sbjct 807 TGAAGATGA--A-TTGGAC-TCAGCGCCAGAGCAATTGCAATCCAGTATGTCTTCCCAAG 862 Query 916 AAATGAATAACGTTGGAGCTTCTAAAGTGCAGTCAAAGAGAAGAAGAACACCAAATGACT 975 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 863 AAATGAATAACGTTGGAGCTTCTAAGGTGCAGCCAAAGAGAAGAAGAACACCAAATGACT 922 Query 976 CGGAAGATGATGGGACTGAAGGGGTCAAGCGAATGAGAGGGCTTGAGGATATTGGGAAAG 1035 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 923 CGGAAGATGATGGGACTGAAGGAGTCAAGCGAATGAGAGGGCTTGAGGATATTGGGAAAG 982 Query 1036 AACAGGCTGGTGGTATAGTCGAGCATAAGCAAGATTTGGATTTGATCTGTGCTGTAGGCC 1095 |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| | | Sbjct 983 AACAGGCTGGTGCTATAGTCGAGCATAAGCAAGAATTGGGTTTGATCTGTGCTGTAAGTC 1042 Query 1096 TCAGTGATTCAGTGTCGAATGGAAATACTATTGCCAATGGGAACAAGGTATGCT-CCC-- 1152 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| Sbjct 1043 TCAGTGATTCAGTGTCGAATGGAAATATTATTGCCAATGGGAACAAGGTGTGCTCCCCGT 1102 Query 1153 CGTCATC-GT-----TAAAAA--G-A-AA-TGTT-A--G----TGAGTGCTCTAAAAGGA 1194 ||||||| | ||||| | | || | || | | ||||||||||||||||| Sbjct 1103 CGTCATCACTAAAAAGAAAAAGGGCACAAGTCTTAAGTGCTCATGAGTGCTCTAAAAGGA 1162 Query 1195 AAAACCGACGCCGCCAATTGACAAAGGTTTTAGAGAGTACAGCTATGGTCTCTGTCCCTG 1254 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1163 AAAACCGACGCCGGCAATTGACAAAGGTGTTAGAGAGTACAGCTATGGTCTCTGTCCCTG 1222 Query 1255 TTACCTGTGACCAAG-GTGTCAGTTTGGATTGTCAAGGGATTTATGACAGCAAAGTATCA 1313 |||||||||||| || |||||||||||||||| ||||||||||||||||||||||| || Sbjct 1223 TTACCTGTGACC-AGCTTGTCAGTTTGGATTGTGAAGGGATTTATGACAGCAAAGTACCA 1281 Query 1314 GGAATGGAGTCTGTTGAATCCATGAAAAGCGTTTCTGTTGTAATCAACAATAACTCGGAC 1373 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1282 GGAATGGAATCTGTTGAATCCATGAAAAGCGTATCTGTTGTAATCAACAATAACTCGGAC 1341 Query 1374 AGTACCGGGGTGTCATGTGAGGATGCTTATGAAAATGTTGTCGGAGCCTCCCATAACAAC 1433 || |||||| | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1342 AGCACCGGGATTTCGTGTGAGGATGCTTATGAAAATGTTGTCGGAGCCTCCCATAACAAC 1401 Query 1434 AAGGCAAAAGACAGTGAGATTTCCAGCATATCTGTTTCCGCAGAGGATGATTCTTCTGAC 1493 ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1402 AAGGCAAGAGACAGTGAGATTTCCAGCATATCAGTTTCGGCAGAGGATGATTCTTCTGAC 1461 Query 1494 AGATTATTTGATGTTCCACTAACCGGAGAAGAAAACCACTCAGAAGGCTTTCCGGCAGCT 1553 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1462 AGATTATTTGATGTTCCACTAACTGGAGAAGAAAACCACTCAGAAGGCTTTCCGGCAACT 1521 Query 1554 TGTAGAATCTCCTCACCAAGGAAAGCTCTTGTTACTGATTTAACCAGGCGGTGTGGTCGG 1613 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| Sbjct 1522 TGTAGAATCTCCTCATCAAGGAAAGCTCTTGTTACTGATTTAACCAGGCGGCATGATCGG 1581 Query 1614 AATAGTCACAATGTGTTTGTTAAGAATGAGGCAAGTAACGGATCAGCTTGTACAAGTCCA 1673 | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1582 AGTAGTCACAATGTGTTTGTTAAGAATGAGGGAAGTAATGGATCAGCTTGTACAAGTCCA 1641 Query 1674 CCAGCTTCAGAACCTGTCAACTGTATTTTGAGCGGGATTGAGAAGAACACTTCTAAGTGG 1733 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1642 CCAGCTTCAGAACCTGTCAACTGTAATTTGAGCGGGATTGAGAAGAGCACTTCTAAGTGG 1701 Query 1734 CAGCTGAAAGGAAAGAGGAACTCGAGGCAGATGAGTAAGAAACAAGAAGAGAGAAGAAAT 1793 |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1702 AAGCTAAAAGGAAAGAGAAACTCGAGGCAGATGAGTAAGAAACAAGAAGAGAGAAGAAAT 1761 Query 1794 GTGTACGGCGAAGAAGCTAATAACAACAGTTCTACGCCTCATTCTACGCTGTATGAGGTG 1853 |||||||| |||||||||||||||||||||| ||||||||||||| ||||||| |||||| Sbjct 1762 GTGTACGGTGAAGAAGCTAATAACAACAGTTGTACGCCTCATTCTGCGCTGTACGAGGTG 1821 Query 1854 AAGATTGAGGTAAAAGCAAGCTATACCAAACCCCGAGTTCCACTGGTGTCTCGTATGAGT 1913 || |||||||||||||||| ||||| ||||||||| ||||| |||||||||||||||||| Sbjct 1822 AAAATTGAGGTAAAAGCAAACTATAACAAACCCCGTGTTCCGCTGGTGTCTCGTATGAGT 1881 Query 1914 GAATTGAGTGGCAAAGCTATTGTTGGACATCCTTTAAGTGTTGAAATCTTGGAAGAAGAC 1973 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1882 GAATTGAATGGCAAAGCTATTGTTGGGCATCCTTTAAGTGTTGAAATCTTGGAAGAAGAC 1941 Query 1974 TACTCCAATGGTATGGTGATGCCTCCAGTTGTTGCGAAGGCGAAGTCATTGCCCAAAAAG 2033 |||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||||| Sbjct 1942 TACTCCAACGGTATGGTGATGCCTCAAGTTGTTGTGAAGGCGAAGTCATTGTCCAAAAAG 2001 Query 2034 AATG 2037 |||| Sbjct 2002 AATG 2005 Score = 479 bits (259), Expect = 5e-134 Identities = 392/451 (87%), Gaps = 30/451 (7%) Strand=Plus/Plus Query 2033 GAATGAAGCAAGAAGCAGACAACAGAGAAGGCAAAGGAAACGGTTGTAGCTTGTATACCG 2092 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2063 GAAAGAAGCAAGAAGCAGACAACAGAAAAGGCAAAGGAAACGGTTGTAGCTTGTATACCG 2122 Query 2093 TTGAAAGTAGTTTTCAGTAGGATAAATGAAGTGTTGAAAGGGTCAGCAAGACAAACACAG 2152 ||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||| Sbjct 2123 TTGAAAGTAGTTTTCAGCCGGATAAACGAAGTGCTGAAAGGCTCAGCAAGACAAACACAG 2182 Query 2153 CACCGAGCATTGCCTTCTGCAGCCAAAACATGAGAGACAGAGAAGATAGATTTTTGGCTG 2212 |||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct 2183 CACCGAGCATTGCCATCTGCAGCCAAAATATGAGAGAGAGAGAAGATAAATTTTTGGCTG 2242 Query 2213 GCTTTACGtttttt-t----GTTTTCTCGTCATCTATCTGTCTGGGTTTCGAAGCTTAAA 2267 |||||||||||||| | |||||| | ||||| ||||| || ||||| ||||| |||| Sbjct 2243 GCTTTACGTTTTTTGTTTTTGTTTTCCCTTCATCCATCTGCCTTGGTTTTGAAGCATAAA 2302 Query 2268 CTGAGATGAAAATAGACTG-T--TTTGGAGAAGTTGGAAGTGAGCAAATGTAAATATATC 2324 ||||||||||||||| ||| | |||| |||||||||||||||| ||||||| ||||||| Sbjct 2303 CTGAGATGAAAATAGGCTGCTGCTTTGAAGAAGTTGGAAGTGAGTAAATGTATATATATC 2362 Query 2325 AGTAGTTAGTGGTTGAGATGTAAAACTGATAAAAAAGCTTGAGATTAGGTGGGAGTGATA 2384 ||||||||||||||||| || | ||||| || ||||||||||||||| ||| Sbjct 2363 AGTAGTTAGTGGTTGAG--GT------G-TAAAA---CT-GAGATTAGGTGGGAGGGAT- 2408 Query 2385 TGAGATTG-TTGGCTGCTTAGAAAGAATTTTCCTTGTTTCAGGTAACTCAAAATTGTTTG 2443 |||| | ||| ||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 2409 -GAGAA-GATTGA-TGCTTAGAAAGAATTTTGCTTGTTTCAGGTAACTCATTATTGTTTG 2465 Query 2444 TTT-TCTT---GTACTCTCAAGTTCTCTTGT 2470 ||| | || |||||||||||||||||||| Sbjct 2466 TTTGTTTTTTTGTACTCTCAAGTTCTCTTGT 2496 Score = 307 bits (166), Expect = 2e-82 Identities = 267/311 (86%), Gaps = 26/311 (8%) Strand=Plus/Plus Query 1 GACctcctcttctctctcagtctctctctctctctccatccaaaacaagccctttctctc 60 |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| Sbjct 1 GACCTCCTCTTCTCTCTC-G---GTCTCTCTCTCTCCATCCAAAACCAGCCCTTTCTCTC 56 Query 61 tcctctc-c-tct--gct-ct-ctct--gtctTCCATTCATTAAACCGCCGGAGCAAAAA 112 ||||||| | ||| ||| || |||| |||||||||||| ||||||||||||||||||| Sbjct 57 TCCTCTCTCCTCTCTGCTGCTGCTCTCTGTCTTCCATTCACTAAACCGCCGGAGCAAAAA 116 Query 113 CCCTTTTCTCACAACCCGAAGACA-AATGCGGTC----CT-AATGCTATCTGATTCATAG 166 ||||||||||| |||| |||| | ||||||||| || |||||||| |||||||| | Sbjct 117 CCCTTTTCTCAGAACCAAAAGA-AGAATGCGGTCTTGTCTTAATGCTATTTGATTCATTG 175 Query 167 ACAGATAGAAACCTCCTAAC-GCCGCAGAGTAGT-GAAAAG-AGGATTCAAGAAGGGGGC 223 |||||||||||||||||||| | | | | || | | |||||||||||||||| | Sbjct 176 ACAGATAGAAACCTCCTAACAGT-G-ATTTTTGTTGGTT-GCAGGATTCAAGAAGGGG-C 231 Query 224 ATACTTTTGTTTAGTGAAAGAAAGTCACTTCATTGAGATTTTCAAATTATAAAGTTTTGA 283 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 232 ATACTTTTGTTTAGTGAAAGAAAGTCACTTCATTGAGATTTCCAGATTATAAAGTTTTGA 291 Query 284 TTTTTAGGTCA 294 ||||||||||| Sbjct 292 TTTTTAGGTCA 302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93968634415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5