BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51760.1
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923670 jgi|Araly1|923670|scaffold_104951.1 2220 0.0
Ahg923674 jgi|Araly1|923674|scaffold_104955.1 1539 0.0
> Ahg923670 jgi|Araly1|923670|scaffold_104951.1
Length=1363
Score = 2220 bits (1202), Expect = 0.0
Identities = 1309/1362 (96%), Gaps = 2/1362 (0%)
Strand=Plus/Plus
Query 124 AATCGAATCCGAGATAAGTCATGAGTTTCTTCAAATGGGTTTCTTTTGTTTTGATCCTTC 183
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AATCGAATCCGATATAAGCCATGAGTTTCTGCAAATGGGTTTCTTTTGTTTTGATCCTTC 60
Query 184 ACTTGCTTAATCCGACTCTGATTTCATGTTCCTCTAATGGGTTATCTCAAATACCTTCAA 243
||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 61 ACTTGCTTAATCCGAGTCTGATTTCATGTTCCTCTAATGGGTTATCTCAAATCCCATCAA 120
Query 244 AGTTTCTTACTTTGGCTAAAAGGAATGATTTTTTCGATTGGATGGTTGGAATCAGAAGGA 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AGTTTCTTACTTTGGCTAAAAGGAATGATTTTTTCGATTGGATGGTTAGAATCAGAAGGA 180
Query 304 GAATCCATGAGAATCCAGAGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGTTAGAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAATCCATGAGAATCCAGAGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGTTAGAG 240
Query 364 CAGAGTTGGAGAAGATGGGTGTTTCTTATAAGTACCCAGTTGCTGTTACTGGTGTTGTTG 423
|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 241 CAGAATTGGAGAAGATGGGTGTGTCTTTTAAGTACCCAGTTGCTGTTACTGGTGTTGTTG 300
Query 424 GGTATGTTGGAACTGGTCATGCTCCTTTTGTTGCTTTAAGGGCTGATATGGATGCACTTG 483
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GATATGTTGGAACTGGTCAAGCTCCTTTTGTTGCTTTGAGGGCTGATATGGATGCACTTC 360
Query 484 CTATGCAGGAAATGGTGGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTT 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTATTCAGGAAATGGTGGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTT 420
Query 544 GTGGACATGACGCTCACACTACGATGCTTCTCGGTGCTGCAAAATTGCTCAAAGAACATG 603
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 421 GTGGACATGACGCTCACACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACATG 480
Query 604 AAGAAGAGCTACAGGGCACAGTGGTTCTAGTTTTCCAACCAGCTGAGGAAGGAGGAGGAG 663
|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 481 AAGAAGAGCTACAGGGTACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGGAG 540
Query 664 GTGCAAAGAAGATTGTGGAGGCTGGAGTGTTGGAGAATGTGAGTGCAATCTTTGGATTAC 723
|||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 541 GTGCAAAGAAAATCGTGGAGGCTGGAGTATTGGAGAATGTGAGCGCAATCTTTGGATTAC 600
Query 724 ATGTCACAAATCAATTGGCATTAGGTCAAGTGAGCTCGAGAGAGGGTCCTATGTTGGCTG 783
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 601 ATGTCACAAATCAATTGGCATTAGGTCAAGTGAGCTCAAGAGAGGGTCCAATGTTGGCTG 660
Query 784 GTAGTGGCTTTTTCAAAGCTAAGATAAGCGGGAAAGGAGGCCACGCAGCTCTTCCGCAGC 843
|||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 661 GTAGCGGGTTTTTCAAAGCTAAGATAAGCGGGAAAGGAGGTCACGCAGCTCTTCCTCAGC 720
Query 844 A-TACCATAGATCCGATACTGGCAGCTTCAAATGTTATTGTTAGCTTACAACACCTCGTT 902
| | |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 ACT-CCATAGATCCCATATTGGCAGCTTCGAATGTTATTGTTAGCTTACAACACCTCGTT 779
Query 903 TCACGAGAGGCAGATCCTTTAGACTCTCAGGTGGTTACAGTTGCTAAATTTGAAGGCGGT 962
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 780 TCACGAGAGGCAGATCCTTTAGACTCACAGGTTGTTACAGTTGCTAAATTTGAAGGCGGT 839
Query 963 GGTGCTTTCAATGTGATTCCTGACTCTGTTACTATCGGTGGTACATTCCGAGCTTTTTCA 1022
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 840 GGTGCTTTCAATGTGATTCCAGACTCTGTTACTATCGGTGGTACATTCCGAGCCTTTTCA 899
Query 1023 ACTAAAAGCTTTATGCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACTAAAAGCTTTATGCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGC 959
Query 1083 GTGAATATGTGTAATGCAACAGTGGATTTCATTGAAGAGGAGAAACCTTTTTTCCCACCA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTGAATATGTGTAATGCAACAGTGGATTTCATTGAAGAGGAGAAACCTTTTTTCCCACCA 1019
Query 1143 ACTGTAAATGACAAAGCCTTACACCAGTTTTTCAAGAACGTTTCAGGCGATATGTTAGGG 1202
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 ACTGTAAATGACAAAGACTTACACCAGTTTTTCAAGAACGTTTCCGGCGATATGTTAGGG 1079
Query 1203 ATTGAGAATTACGTCGAGATGCAACCATTAATGGGATCAGAAGATTTCTCTTTCTACCAA 1262
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1080 ATCGAGAATTACGTCGAGATGCAACCATTAATGGGATCAGAGGACTTCTCTTTCTACCAA 1139
Query 1263 CAAGCAATCCCGGGACATTTTAGCTTCGTTGGAATGCAAAACAAAGCTCGTTCACCAATG 1322
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1140 CAAGCAATCCCGGGACACTTTAGCTTCGTTGGAATGCAAAACAAAGCTCATTCACCAATG 1199
Query 1323 GCGAGCCCTCACTCGCCGTACTTTGAAGTTAACGAAGAATTACTACCTTATGGTGCTTCC 1382
|||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 GCGAATCCTCACTCGCCGTATTTTGAAGTTAACGAAGAACTACTACCTTATGGTGCTTCC 1259
Query 1383 CTTCATGCTTCCATGGCCACAAGATATCTTCTTGAACTAAAAGCTTCAACTCTAAATAAG 1442
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1260 CTTCATGCTTCCATGGCCACAAGATATCTTCTTGAATTGAAAGCTTCAACTCTAAATAAG 1319
Query 1443 AGTAACAAAAAAGATGAACTTTGATGCCAACAAACATTGGCT 1484
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGTTACAAAAAAGATGAACTTTGATGCCAACAAACATTGGCT 1361
> Ahg923674 jgi|Araly1|923674|scaffold_104955.1
Length=1362
Score = 1539 bits (833), Expect = 0.0
Identities = 1173/1336 (88%), Gaps = 27/1336 (2%)
Strand=Plus/Plus
Query 144 ATGAGTTTCTTCAAATGGGTTTCTTTTGTTTTGATCCTTCACTTGCTTAATC-CGACTCT 202
|||||||||| ||||| ||||||||||||||||||||||||||| || || | || |||
Sbjct 22 ATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTACTCAA-CTCGTGTCT 80
Query 203 GATTTCATGTTCCTCTAATGGGTTATCTCAAATACCTTCAAAGTTTCTTACTTTGGCTAA 262
||||||||||||||| |||| ||| |||||||| ||| |||||| |||| | | |||||
Sbjct 81 GATTTCATGTTCCTCGAATGAGTTGTCTCAAATCCCTAAAAAGTTCCTTAGTCTAGCTAA 140
Query 263 AAGGA-ATGATTTTTTCGATTGGATGGTTGGAATCAGAAGGAGAATCCATGAGAATCCAG 321
|| || |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 141 AA-GAGATGATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATCCACGAGAACCCAG 199
Query 322 AGTTAGGTTATGAGGAAGTAGAGACATCTAAGCTTGTTA-GAGCAGAGTTGGAGAAGATG 380
| |||||||| ||||||||||||||||||||||| || | || |||| ||||||||||||
Sbjct 200 AATTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAGGA-CAGAATTGGAGAAGATG 258
Query 381 GGTGTTTCTTATAAGTACCCAGTTGCTGTTACTGGTGTTGTTGGGTATGTTGGAACTGGT 440
||||| ||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 259 GGTGTGTCTTATAAGTATCCAGTTGCTGTAACTGGTGTTATTGGATATGTTGGAACTGGT 318
Query 441 CATGCTCCTTTTGTTGCTTTAAGGGCTGATATGGATGCACTTGCTATGCAGGAAATGGTG 500
||||| || ||||||||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 319 CATGCCCCCTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGAAATGGTG 378
Query 501 GAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTTGTGGACATGACGCTCAC 560
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 379 GAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGTCATGACGCTCAC 438
Query 561 ACTACGATGCTTCTCGGTGCTGCAAAATTGCTCAAAGAACATGAAGAAGAGCTACAGGGC 620
|||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 439 CCTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAGGAGCTACAGGGT 498
Query 621 ACAGTGGTTCTAGTTTTCCAACCAGCTGAGGAAGGAGGAGGAGGTGCAAAGAAGATTGTG 680
|||||| |||| |||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 499 ACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGCAGGTGCAAAGAAAATCGTG 558
Query 681 GAGGCTGGAGTGTTGGAGAATGTGAGTGCAATCTTTGGATTACATGTCACAAATCAATTG 740
|||||||||||||||||||||||| |||||||||||||| ||||||| | |||| ||||
Sbjct 559 GAGGCTGGAGTGTTGGAGAATGTGGGTGCAATCTTTGGAATACATGTTTCCAATCTATTG 618
Query 741 GCATTAGGTCAAGTGAGCTCGAGAGAGGGTCCTAT-GTTGGCTGGTAGTGG-CTTTTTCA 798
| |||||||||||||||||| |||||||||| ||| | ||||||||||||| | ||| ||
Sbjct 619 GGATTAGGTCAAGTGAGCTCAAGAGAGGGTC-TATTGATGGCTGGTAGTGGACGTTT-CA 676
Query 799 AAGCTAAGATAAGCGGGAAAGGAGGCCACGCAGCTCTTCCGCAGCATAC-C-ATAGATCC 856
||||||||||||||||||||||||| || || |||||||| || || | | ||||||||
Sbjct 677 AAGCTAAGATAAGCGGGAAAGGAGGTCATGCGGCTCTTCCTCA--ATTCGCCATAGATCC 734
Query 857 -GATACTGGCAGCTTCAAATGTTATTGTTAGCTTACAACACCTCGTTTCACGAGAGGCAG 915
| || |||||||||||||||||||| | |||||||||||||| ||||| ||||||||||
Sbjct 735 AG-TATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACACCTGGTTTCGCGAGAGGCAG 793
Query 916 ATCCTTTAGACTCTCAGGTGGTTACAGTTGCTAAATTTGAAGGCGGTGGTGCTTTCAATG 975
||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||| ||||
Sbjct 794 ATCCTTTAGACTCGCAGGTGGTTACAGTTGCTATATTTGAAGGCAGTGATGCTTTTAATG 853
Query 976 TGATTCCTGACTCTGTTACTATCGGTGGTACATTCCGAGCTTTTTCAACTAAAAGCTTT- 1034
| ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||
Sbjct 854 TCATTCCCGACTCTGTTACTATCGGTGGCACATTCCGAGCCCTTTCACCTAAAAGTTTTG 913
Query 1035 ATGCAACTCAAGAAAAGAATTGAGCAGGTTATCACAAGGCAAGCGAGCGTGAATATGTGT 1094
| |||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 914 A-GCAACTCAAGCAAAGAATTGAGCAGGTTATCACAACGCAAGCAAGCGTAAATATGTGT 972
Query 1095 AATGCAACAGTGGA-TTTCATTGAAGAGGAGAAACCTTTTTTCCCACCAACTGTA-AATG 1152
||||||||||| || |||| ||||||| |||| ||| |||||| || ||| | || |
Sbjct 973 AATGCAACAGTTGACTTTC-TTGAAGATGAGACTCCTCCTTTCCCTCCCGCTG-AGAACG 1030
Query 1153 ACAAAGCCTTACACCAGTTTTTCAAGAACGTTTCAG-GCGATATGTTAGGGATTGAGAAT 1211
|||||| ||| |||| ||||| | |||||||||||| | |||||||||||||||||||||
Sbjct 1031 ACAAAGTCTTGCACCTGTTTTACGAGAACGTTTCAGTG-GATATGTTAGGGATTGAGAAT 1089
Query 1212 TACGTCGAGATGCAACCATTAATGGGATCAGAAGATTTCTCTTTCTACCAACAAGCAATC 1271
|| || |||| || |||| |||||| |||||| |||||| ||||||||||| ||| |||
Sbjct 1090 TATGTTGAGACGCGACCAGTAATGGTATCAGAGGATTTCGCTTTCTACCAAAAAGAAATG 1149
Query 1272 CCGGGACATTTTAGCTTCGTTGGAATGCAAAACAAAGCTCGTTCACCAATGGCGAGCCCT 1331
||||||||||||||||| ||||| ||||| |||||| | | |||||||||||||| ||||
Sbjct 1150 CCGGGACATTTTAGCTTTGTTGGGATGCAGAACAAATCCCATTCACCAATGGCGAACCCT 1209
Query 1332 CACTCGCCGTACTTTGAAGTTAACGAAGAATTACTACCTTATGGTGCTTCCCTTCATGCT 1391
||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1210 CACTCTCCGTATTTTGAAGTTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCTTGCT 1269
Query 1392 TCCATGGCCACAAGATATCTTCTTGAACTAAAAGCTTCAACTCTAAATAAGAGTAACAAA 1451
|| |||||||||||||||||||||| | ||||| | | |||||| ||| ||| |
Sbjct 1270 TCTTTGGCCACAAGATATCTTCTTGAG-TCGT--CTTCATCGCCAAATAAAAGTTACATA 1326
Query 1452 AAAGATGAACTTTGAT 1467
||||||||||||||||
Sbjct 1327 AAAGATGAACTTTGAT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63153626210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5