BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51770.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337332 jgi|Araly1|337332|fgenesh1_pg.C_scaffold_1003897 1818 0.0
Ahg479651 jgi|Araly1|479651|fgenesh2_kg.3__2352__AT3G21310.1 863 0.0
> Ahg337332 jgi|Araly1|337332|fgenesh1_pg.C_scaffold_1003897
Length=1212
Score = 1818 bits (984), Expect = 0.0
Identities = 1136/1212 (94%), Gaps = 0/1212 (0%)
Strand=Plus/Plus
Query 140 ATGGTAATGGAGATGGAGGAATGTGTTAAAGAAAATGGTTCATCAACACCTAAATCTAGA 199
||||||||||||||||||||| || |||||||||||| | ||||||| |||||||| |||
Sbjct 1 ATGGTAATGGAGATGGAGGAAGGTCTTAAAGAAAATGCTGCATCAACCCCTAAATCGAGA 60
Query 200 GTCACAAACCAATCTAGAGCTCTCTTACCGTTGCGTCTGCTTCAGATTCTGTTATTGTTT 259
|||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||
Sbjct 61 GTCACAAACCAAACTAGAGCTCTTTTATCAATGCGTCTGCTTCAGATTTTGTTATTGTTT 120
Query 260 CTTGTTTTGACTCTTGGGATCTCTGTTGTTAGTATACACATGATCAAGTTTTTGAAGATT 319
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 121 CTTGTTTTGACTCTTGGGATCTCTGTTGTTGGTATACACATGATCAAGTTCTTAAAGATT 180
Query 320 CAACGTTTAGATCCTGTGGCTCCAATTACTTTGCTCTCTACGTATAATCATGAGAGTGTT 379
|||| ||| |||| ||||| ||||| ||| ||||||||| |||| | ||||||| ||||
Sbjct 181 CAACATTTGGATCTTGTGGTTCCAACCACTGTGCTCTCTATGTATGACCATGAGACTGTT 240
Query 380 ACTTTAGATAGCTTTATTAGACCTCCTTCCAATGTTTGGCACACAATGAATGATAGTGAA 439
| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 241 AGTTTAGATAGCTTTATTAGACCTCCTTCCAATGTTTGGCACTCAATGAATGACACTGAA 300
Query 440 TTGCTTTGGCGTGCTTCTATAGAGCCGCAAAGAAATGGTTATCCGTTTAGACGTGTCCCT 499
||||||||||||||||| ||||||||||| |||||||| |||||||||| ||| || |||
Sbjct 301 TTGCTTTGGCGTGCTTCGATAGAGCCGCAGAGAAATGGGTATCCGTTTAAACGAGTACCT 360
Query 500 AAATTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTTTGGGAGAAG 559
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 AAACTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTCTGGGAGAAG 420
Query 560 TTCTGTAAAGGACATGAGGGTCTTTATTCTATCTATGTTCATTCGTTGCCTAGTTACAAA 619
|||| ||| ||| ||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 421 TTCTTTAAGGGAAATGAGGGTCTTTACTCTATCTATGTTCATTCATTGCCTAATTACAAA 480
Query 620 TCGGATTTTTCGAGGTCGTCTGTGTTTTACAGAAGATATATCCCTAGTCAGGCTGTGGCA 679
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAGATTTTTCGAGGTCATCTGTGTTTTACAGAAGATATATCCCTAGTCAGGCTGTGGCA 540
Query 680 TGGGGAGAGATGAGTATGGGTGAAGCAGAGAGGAGGCTTTTGGCTAATGCGTTGCTTGAT 739
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 541 TGGGGAGAGATGAGTATGGGTGAAGCTGAGAGGAGGCTTTTGGCTAACGCGTTGCTCGAT 600
Query 740 ATCTCTAATGAATGGTTTGTTCTGCTGTCTGAATCATGCATTCCTCTGCGAGGTTTCAGC 799
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 601 ATCTCTAATGAATGGTTTGTTCTGCTGTCTGAGTCATGCATTCCTCTGCGCGGTTTCAGC 660
Query 800 TTTATCTATAGTTATGTCTCTGAATCAAGATATAGTTTTATGGGTGCTGCTGATGAGGAA 859
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 661 TTTATCTATAGTTATGTCTCTGAATCAAAATATAGTTTCATGGGTGCTGCTGATGAGGAA 720
Query 860 GGACCTGATGGAAGAGGCAGATACAGGACAGAAATGGAACCTGAGATCACACTAAGCCAG 919
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GGACCTGATGGAAGAGGCAGATACAGGACTGAAATGGAACCTGAGATCACACTAAGCCAG 780
Query 920 TGGCGAAAAGGGTCTCAGTGGTTTGAAATTAACCGGAAACTCGCTGTTGAGATTGTTCAA 979
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGCGGAAAGGGTCTCAGTGGTTTGAAATTAACCGGAAACTCGCTGTTGAGATTGTTCAA 840
Query 980 GACACTACTTACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGCTATGTAGATGAA 1039
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 841 GATACTACTTACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGTTATGTTGATGAA 900
Query 1040 CATTACTTCCCAACAATGTTGTCTATGAAACATCGGGTTTTGCTTGCTAATAGGACATTG 1099
||||||||||| |||||| |||||||||||||||| ||||||| |||||| ||||||||
Sbjct 901 CATTACTTCCCGACAATGCTGTCTATGAAACATCGTCTTTTGCTGGCTAATCGGACATTG 960
Query 1100 ACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACTTTTGGTAAGGCTGATGTA 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 ACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACTTTTGGTAAGGCTGATATA 1020
Query 1160 ACGGAAAGTTTTCTCAAGAAGCTTACAGGAGCCAAATCTTGCCTCTACAATGATCATCAG 1219
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct 1021 ACGGAAAGTTTTCTCAAGAAGCTTCCGGGAGCCAAATCCTGCCTCTACAATGATCAGCAG 1080
Query 1220 TCTCAAATCTGTTATCTCTTTGCCAGAAAGTTTGCTCCAAGCGCATTGGAGCCTTTACTG 1279
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1081 TCTCAAATCTGTTATCTATTTGCGAGAAAGTTTGCTCCAAGCGCATTGGAGCCCTTACTG 1140
Query 1280 CAACTTGCACCCAAGATTCTTGAGTTAGGCTCTAACATATCTTCCACTCGTCACTCTTGG 1339
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1141 CAACTTGCACCCAAGATTCTTGATTTGGGTTCTAACATATCTTCCACTCGTCACTCTTGG 1200
Query 1340 TATTTGTTTTGA 1351
| ||||||||||
Sbjct 1201 TTTTTGTTTTGA 1212
> Ahg479651 jgi|Araly1|479651|fgenesh2_kg.3__2352__AT3G21310.1
Length=1544
Score = 863 bits (467), Expect = 0.0
Identities = 952/1181 (81%), Gaps = 54/1181 (5%)
Strand=Plus/Plus
Query 146 ATGGAGATGGAGGAATGTG-TTAAAGAAAATGGTTCATCAACACCTAAATCTAGAGT-CA 203
|||| |||||||||| | | |||| || |||| | ||||| | || || || ||| | |
Sbjct 291 ATGGGGATGGAGGAA-GGGATTAAGGATAATGCTGCATCAGCTCCCAATTCAAGA-TATA 348
Query 204 CAAACCAATCTAGAGCTCTCTTACCGTTGCGTCTGCTTCAGATTCTGTTATTGTTTC-TT 262
||||||||| || |||||| |||||| |||| |||||||| || | || ||| ||| ||
Sbjct 349 CAAACCAATTTAAAGCTCTTTTACCGATGCGGGTGCTTCAGGTTTTCTTGTTG-TTCTTT 407
Query 263 GTTTTGACTCTTGGGATCTCTGTTGTTAGTATACACATGATCAAGTTTTTGAAGATTCAA 322
|||||| |||||| ||||| || ||||||| ||||||||||||| || || | | |
Sbjct 408 GTTTTGGTTCTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTT-AA-A-T--A 462
Query 323 CGTTTAGATCCTGTGGCTCCAAT-TACTTTGCTCTCTACGTATAATCATGAGAGTGTTAC 381
|| | | || ||||||| || || ||| ||||| | | || ||||||| ||||
Sbjct 463 --TTCA-A-ACTTTGGCTCC-ATCCACATTGATCTCT-C-CCT-ATGATGAGAGAATTAC 514
Query 382 TTTAGATAGCTTTAT-TAGACCTCCTTCCAATGTTTGGCACACAATGAATGATAGTGA-A 439
||||| |||||||| || ||||| || | |||||||||| | |||||||| |||||
Sbjct 515 ATTAGAGAGCTTTATCAAG-CCTCCATCGAGTGTTTGGCACTCCATGAATGACAGTGAGC 573
Query 440 TTGCTTTGGCGTGCTTCTATAGAGCCGCAAAGAAATGGTTATCCGTTTAGACGTGTCCCT 499
|| |||||||||||||| || ||||| | | | || ||||||| || | | || |||
Sbjct 574 TT-CTTTGGCGTGCTTCGATGGAGCCACGGATACTTGAATATCCGTATAAAAGGGTTCCT 632
Query 500 AAATTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTTTGGGAGAA- 558
||| |||| ||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 633 AAAATGGCATTCATGTTTCTCACCAAAGGACCTTTGCCATTTGCTCCACTTTGGGA-AAG 691
Query 559 GTTCTGT-AAAGGACATGAGGGTC-TTTATTCTATCTATGTTCATTCGTTGCCTAG-TTA 615
||| | | || || |||||||| | |||| || |||||||||||| ||||||| || |||
Sbjct 692 GTT-TTTCAACGGGCATGAGGG-CTTTTACTCAATCTATGTTCATGCGTTGCC-AGATTA 748
Query 616 CAAATCGGATTTTTCGAGGTCGTCTGTGTTTTACAGAAGATATATCCCTAGTCAGGCTGT 675
| ||| ||||| | || || ||||||||||| |||||| | ||||| |||||| | ||
Sbjct 749 TAGATCAGATTTCCCAAGCTCATCTGTGTTTTATAGAAGACAGATCCCAAGTCAGCCAGT 808
Query 676 GGCATGGGGAGAGATGAGTATGGGTGAAGCAGAGAGGAGGCTTTTGGCTAATGCGTTGCT 735
||| |||||||||||||||||| |||| || || |||||||||||||||||||| |||||
Sbjct 809 GGCTTGGGGAGAGATGAGTATGTGTGATGCTGAAAGGAGGCTTTTGGCTAATGCCTTGCT 868
Query 736 TGATATCTCTAATGAATGGTTTGTTCTGCTGTCTGAATCATGCATTCCTCTGCGAGGTTT 795
||||||||||| |||||||||||| |||| |||||| | ||||||||| | || |||||
Sbjct 869 CGATATCTCTAACGAATGGTTTGTTTTGCTATCTGAAGCGTGCATTCCTATTCGCGGTTT 928
Query 796 CAGCTTTATCTA-TAGTTATGTCTCTGA-ATCAAGATATAGTTTTATGGGTGCTGCTGAT 853
|| |||| |||| | |||||||||| | ||||||||||||||| |||||| ||| ||||
Sbjct 929 CAACTTTGTCTACCA-TTATGTCTCT-AGATCAAGATATAGTTTCATGGGTTCTGTTGAT 986
Query 854 GAGGAAGGACCTGATGGAAGAGGCAGATACAGGACA-GAAATGGAACCTG-AGATCACAC 911
||||| || ||| | || ||||||||||||| | | | ||||| || | || ||| |
Sbjct 987 GAGGACGGTCCTTACGGGAGAGGCAGATACA-GTTATGCAATGGGGCCAGAAG-TCAGTC 1044
Query 912 TAAGCCAGTGGCGAAAAGGGTCTCAGTGGTTTGAAATTAACCG-GAAACTCGCTGTTGAG 970
||||| ||||| ||||||||||||||||||||||||||||| | | | || ||||||||
Sbjct 1045 TAAGCGAGTGGAGAAAAGGGTCTCAGTGGTTTGAAATTAACAGAGCA-CTTGCTGTTGAA 1103
Query 971 ATTGTTCAAGACACTACTT-ACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGCTA 1029
|||||| |||||| | || ||||| |||||||||||||||||||||||||| || ||
Sbjct 1104 ATTGTTGAAGACA-TGGTTTACTATAAAAAATTCAAAGAGTTTTGTAGACCTCCTTGTTA 1162
Query 1030 TGTAGATGAACATTACTTCCCAACAATGTTGTCTAT-GAAACAT-CGGGTTTTGCTTGCT 1087
||||||||||||||||||||| |||||| | ||||| | | || ||| ||| ||| |||
Sbjct 1163 TGTAGATGAACATTACTTCCCCACAATGCTCTCTATTGGAT-ATTCGGATTT-GCTCGCT 1220
Query 1088 AATAGGACATTGACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACTTTTGGT 1147
||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1221 AATCGGACATTGACATGGACAGATTGGTCAAGAGGTGGTGCTCATCCAGCTACTTTTGGC 1280
Query 1148 AAGGCTGATGTAACGGAAAGTTTTCTCAAGAAGCTTACAGGAGC-CAAATCTTGCCTCTA 1206
|| ||||| |||| || || || |||||||||||| || ||| ||| ||||| ||||
Sbjct 1281 AAAACTGATATAACAGAGAGGTTCCTCAAGAAGCTTTCACGAGGTCAAG-CTTGCTTCTA 1339
Query 1207 CAATGATCATC-AGTCTCAAATCTGTTATCTCTTTGCCAGAAAGTTTGCTCCAAGCGCAT 1265
||||||| | | | |||||| | |||||||| ||||| ||||||||| | ||||||||||
Sbjct 1340 CAATGATAAGCCA-TCTCAAGTGTGTTATCTTTTTGCAAGAAAGTTTTCGCCAAGCGCAT 1398
Query 1266 TGGAGCCTTTACTGCAA-CTTGCACCCAAGATTCTTGAGTT 1305
||||||||||||| ||| |||||||| ||| |||||| |||
Sbjct 1399 TGGAGCCTTTACT-CAAACTTGCACCAAAGGTTCTTGGGTT 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5