BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51790.1
Length=2960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337334 jgi|Araly1|337334|fgenesh1_pg.C_scaffold_1003899 479 5e-134
> Ahg337334 jgi|Araly1|337334|fgenesh1_pg.C_scaffold_1003899
Length=807
Score = 479 bits (259), Expect = 5e-134
Identities = 330/363 (91%), Gaps = 10/363 (3%)
Strand=Plus/Plus
Query 915 ATGAGAACTGGAATTGTACCAGATAATCCAAGAGGATTTGTAGATTTTGGATGGATTCCA 974
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAGAACTGGAATTGTACCAGATAATCCAAGAGGGTTTGTAGATTTTGGATGGATTCCA 60
Query 975 GATGATCCGTCTCTTGAGTTTTTCTTTTACTTGTATTTCACGGAACTTCAACAACCTAAT 1034
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 61 GATGATCCGTCTCTCGAGTTTTTCGTTTACTTGTATTTCACGGAACTTCAACAACCGAGT 120
Query 1035 TCCGGAA--CCGTAGAAACAAGAGAATTCGTGATCTTGTTGAACGGGA-AGTCTTTTGGG 1091
||| || ||| || |||||||||||||| |||||||||||| ||| || ||||||||
Sbjct 121 TCC--AATTCCGCGGATACAAGAGAATTCGTAATCTTGTTGAAC-GGAGAGGCTTTTGGG 177
Query 1092 GAACCG-TTAAGTCTTAACTACTTCCGGACCTTAGCCTTGTTCACTTCAAACCCTTTGAA 1150
| |||| || |||||||| ||||||| |||||||||| || ||||| |||||||||||||
Sbjct 178 GGACCGCTT-AGTCTTAATTACTTCCAGACCTTAGCCCTGATCACTCCAAACCCTTTGAA 236
Query 1151 AGCAGAGAGCTTCCAGTTTTCTCTTCGTCAGACTCAGAGTTCATCTCTTCCACCTCTGAT 1210
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGCACAGAGCTTCCAGTTTTCTCTTCGTCAGACTCAGAGTTCATCTCTTCCACCTCTGAT 296
Query 1211 CAATGCTATGGAGACTTACTTTG-TAAACAAACTTCCACAATCATCAACGGATCCAAACG 1269
|||||| ||||||||||||||| ||| ||||||||| |||||||| || |||| |||||
Sbjct 297 CAATGCGATGGAGACTTACTTTACTAA-CAAACTTCCGCAATCATCGACCGATCAAAACG 355
Query 1270 ACC 1272
|||
Sbjct 356 ACC 358
Score = 351 bits (190), Expect = 1e-95
Identities = 241/264 (91%), Gaps = 9/264 (3%)
Strand=Plus/Plus
Query 1413 AACTTATCGTCCGCCGGATTGACTGGAGAGATAACGTCTGATATATCGCGTCTTTCGCAG 1472
||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 415 AACTTGTCATCCGCCGGATTGACAGGAGAGATAACGTCTGATATATCGCGGCTTTCACAG 474
Query 1473 TTGCAAATTCTGGACTTATCAAATAACAATTTGAGTGGACCTGCAGTACCAGCTTTCTTA 1532
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 475 TTGCAAATTCTGGACTTATCAAATAACAATTTGACTGGACC---AGTACCAGCTTTCTTA 531
Query 1533 GCGCAACTCCAATTCCTGAGAGTCCTACATTTGGCGAACAACCAGCTTAGTGGTCCTATA 1592
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 532 GCTCAACTCCAATTCCTGAGAGTCTTACATTTGGCGAACAACCAGCTTAGTGGTCCTCTA 591
Query 1593 CCCTCTAGTCTCATAGAGAGACTAGACTCGTTTAGT------GGGAATCCAAGTATTTGT 1646
|| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 592 CCATCTAGTCTCATAGAGAGGCTAGAGTCGTTTAGTATCAATGGGAATCCAAGTATTTGT 651
Query 1647 TCTGCAAATGCGTGTGAAGAGGTC 1670
||| ||||||| ||||||||||||
Sbjct 652 TCTACAAATGCTTGTGAAGAGGTC 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111756778830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5