BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51800.1
Length=2877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923731 jgi|Araly1|923731|scaffold_105012.1 710 0.0
Ahg337336 jgi|Araly1|337336|fgenesh1_pg.C_scaffold_1003901 673 0.0
> Ahg923731 jgi|Araly1|923731|scaffold_105012.1
Length=1218
Score = 710 bits (384), Expect = 0.0
Identities = 527/595 (89%), Gaps = 14/595 (2%)
Strand=Plus/Plus
Query 566 GCTTTAGAGCTTCGTAAACTCATGAACACAACTTACTTGACTCGACAAGGTTCCTTGCAG 625
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1 GCTTTAGAGCTTCGTAAACTCATGAACACAACTTACTGGACTCGACAAGGGTCCTTGCAG 60
Query 626 ACCTTCATCAGAGCAGACGTTGGCGCGACTGTTAACCAAGGCTACAGGTACGGAATCGAT 685
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 61 ACCTTCATCAGAGCAGACGTTGGAGCAACTGTTAACCAA---TACAGGTACGGAATCGAT 117
Query 686 GTGTTTGATCGTGTCTGGACTCCG-TATAATTTC-GGAAACTGGTCACAGATTAGTACCA 743
||||||||||||||||||||| || ||||||||| || ||||| |||| |||||||||||
Sbjct 118 GTGTTTGATCGTGTCTGGACT-CGATATAATTTCAGG-AACTGTTCACGGATTAGTACCA 175
Query 744 ATCAGTCAGTGAATATAAACAATGACTATCAACCACCAGAGATTGCTATGGTCACAGCCT 803
|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATCACACAGTAAACGTAAACAATGACTATCAACCACCAGAGATTGCTATGGTCACAGCCT 235
Query 804 CTGTTCCAACAGACCCGGACGCAGCTATGAACATTTCGCTAGTCGGGGTGGAACGTACTG 863
||||||||||||||||||||||| |||||||||||||| || ||| |||||||| ||||
Sbjct 236 CTGTTCCAACAGACCCGGACGCACCTATGAACATTTCGTTATTCGCGGTGGAACCTACTT 295
Query 864 TGCAGTTCTACGTTTTTATGCATTTTGCAGAGATTCAAGAGCTCAAATCCAATGATACAA 923
|||| ||| | | ||||||||||| |||||||||||||||||||||| || ||
Sbjct 296 TGCAACTCTTTATGGTAATGCATTTTGCGGAGATTCAAGAGCTCAAATCCAGCGACGTAA 355
Query 924 GAGAGTTCAACATCATGTACAATAACAAGCATATCTATGGACCTTTTAGACCACTTAATT 983
||||||| || |||||||||||| |||||||||||| ||||| | ||||| |||||||
Sbjct 356 GAGAGTTTAATATCATGTACAATGGCAAGCATATCTACGGACCCATCAGACCGCTTAATT 415
Query 984 TCACCACGTCTTCCGTATTTACAC-CTACCGAAGTTGTCGCCGATGCAAA-TGGGCAGTA 1041
||||||| ||||| |||||||| | ||||||||||||| || |||| ||| | | |||||
Sbjct 416 TCACCACTTCTTCTGTATTTAC-CTCTACCGAAGTTGTTGCGGATG-AAAGTAGACAGTA 473
Query 1042 CATATTTTCGCTTCAAAGAACAGGAAATTCGACTTTACCTCCTCTGCTCAACG-CTATGG 1100
|| |||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 474 CACATTTTCGCTTCAAAGAACAGAAAATTCGACTTTACCTCCTCTGCTCAATGGC-ATGG 532
Query 1101 AGATTTATTCGGTTAACTTGTTGCCGCAACAGGAAACTGATAGAAAAGAAG-TTG 1154
| |||| || ||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 533 AAATTTTTTGGGTTAACTTGTTGCCGCAACAAGAAACTGATAGAAAACAAGGTTG 587
Score = 549 bits (297), Expect = 4e-155
Identities = 367/401 (92%), Gaps = 3/401 (1%)
Strand=Plus/Plus
Query 1292 TTGG-ATCTGTCTACAAGTGGCTTGACCGGAGAGATCTTAGAATTTATATCAGACCTTAC 1350
|||| | || ||| |||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 585 TTGGAACCTTTCTGCAAGTGGCTTGACCGGAGAGATATTGGAATTCATATCAGACCTTAC 644
Query 1351 CAGTTTAGAAGTTCTTGACTTGTCTAACAATTCTTTAACTGGTTCAGTCCCAGAGTTTCT 1410
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 645 CAGTTTAGAAGTTCTTGACTTGTCTAACAATTCTATGACTGGTTCAGTCCCAGAGTTTCT 704
Query 1411 AGCTA-ATATGGAAACCTTAAAACTCATAAATCTATCTGGAAATGAGCTAAATGGCTCTA 1469
||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 705 AGC-AGACATGGAAACCTTAAAACTCATAAATCTATCAGGAAATGAGCTAAATGGCTCAA 763
Query 1470 TCCCTGCAACTCTCCTTGATAAAGAACGACGAGGATCTATTACGTTAAGTATCGAAGGAA 1529
|||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||||
Sbjct 764 TCCCTGCAACTCTCCTTGATAAAGCACGAAGAGGATCGATTTCGATAAGTATCGAAGGAA 823
Query 1530 ATACCGGGCTTTGTTCATCTACATCATGCGCTACCACGAAAAAGAAGAAGAAAAACACTG 1589
|| |||||| ||||||||||| | |||| |||||||| |||||||||||||||||||||
Sbjct 824 ATGTCGGGCTCTGTTCATCTACTTTATGCCCTACCACGGAAAAGAAGAAGAAAAACACTG 883
Query 1590 TTATTGCACCTGTTGCAGCATCACTTGTTTCAGTATTCCTCATTGGAGCTGGAATCGTTA 1649
| |||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||
Sbjct 884 TCATTGCACCTGTTGCTGCATCACTTGTTTTATTCTTCCTCATTGGAGCTGGAATCGTTA 943
Query 1650 CTTTCCTTATCCTCAAGAGGAAGAAGAGAACCAAGCTTGGT 1690
|||||||||||||||||||||||||||| |||| ||||||
Sbjct 944 CTTTCCTTATCCTCAAGAGGAAGAAGAGTGCCAAACTTGGT 984
> Ahg337336 jgi|Araly1|337336|fgenesh1_pg.C_scaffold_1003901
Length=642
Score = 673 bits (364), Expect = 0.0
Identities = 401/419 (96%), Gaps = 1/419 (0%)
Strand=Plus/Plus
Query 1293 TGG-ATCTGTCTACAAGTGGCTTGACCGGAGAGATCTTAGAATTTATATCAGACCTTACC 1351
||| |||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 139 TGGAATCTGTCTGCAACTGGCTTGACCGGAGAGATATTAGAATTAATATCAGACCTTACC 198
Query 1352 AGTTTAGAAGTTCTTGACTTGTCTAACAATTCTTTAACTGGTTCAGTCCCAGAGTTTCTA 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AGTTTAGAAGTTCTTGACTTGTCTAACAATTCTTTAACTGGTTCAGTCCCAGAGTTTCTA 258
Query 1412 GCTAATATGGAAACCTTAAAACTCATAAATCTATCTGGAAATGAGCTAAATGGCTCTATC 1471
|| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 259 GCAAACATGGAAACCTTAAAACTCATAAATCTATCAGGAAATGAGCTAAATGGCTCAATC 318
Query 1472 CCTGCAACTCTCCTTGATAAAGAACGACGAGGATCTATTACGTTAAGTATCGAAGGAAAT 1531
||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct 319 CCTGCAACTCTCCTTGATAAAGAACGAAGAGGATCGATTACGTTAAGTACCGAAGGAAAT 378
Query 1532 ACCGGGCTTTGTTCATCTACATCATGCGCTACCACGAAAAAGAAGAAGAAAAACACTGTT 1591
||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 GCCGGGCTCTGTTCATCTGCATCATGTGCTACCACGAAAAAGAAGAAGAAAAACACTGTT 438
Query 1592 ATTGCACCTGTTGCAGCATCACTTGTTTCAGTATTCCTCATTGGAGCTGGAATCGTTACT 1651
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 439 ATTGCACCTGTTGCAGCATCACTTGTTTCAGTCTTCCTCATTGGAGCTGGAATCGTTACT 498
Query 1652 TTCCTTATCCTCAAGAGGAAGAAGAGAACCAAGCTTGGTTTGAATCCTAATTCAGGAAC 1710
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 499 TTCCTTATCCTCAAGAGGAAGAAGAGATCCAAGCTTGGTTTGAATCCTAATTCAGGAAC 557
Score = 250 bits (135), Expect = 4e-65
Identities = 139/141 (99%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 587 ATGAACACAACTTACTTGACTCGACAAGGTTCCTTGCAGACCTTCATCAGAGCAGACGTT 646
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAACACAACTTACTTGACTCGACAAGGGTCCTTGCAGACCTTCATCAGAGCAGACGTT 60
Query 647 GGCGCGACTGTTAACCAAGGCTACAGGTACGGAATCGATGTGTTTGATCGTGTCTGGACT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCGCGACTGTTAACCAAGGCTACAGGTACGGAATCGATGTGTTTGATCGTGTCTGGACT 120
Query 707 CCGTATAATTTCGGAAACTGG 727
|||||||||||||| ||||||
Sbjct 121 CCGTATAATTTCGGGAACTGG 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108595288495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5