BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51802.1

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923678 jgi|Araly1|923678|scaffold_104959.1                        278    1e-74


> Ahg923678 jgi|Araly1|923678|scaffold_104959.1
Length=328

 Score =  278 bits (150),  Expect = 1e-74
 Identities = 162/168 (96%), Gaps = 0/168 (0%)
 Strand=Plus/Plus

Query  25   TATGGGGTATCTTTGAGTTCATCAACATGTGTCATTCAATGGTGTGCCATTCAATGTAAG  84
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  141  TATGGGGTATCTTTGAGTTCATCAACATGTGTCATTCAATGGTGTGCCACTCAATGTAAG  200

Query  85   AGGAAAGAAGCTAATGGGATCGGTACTTGCAAGCCAAGGCCCAATCAAGGGAAAATACAA  144
            |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct  201  AGGAAAGAAGCTAATGGGATCGGTACATGCAAGCCAAGGCCCAATCAAGAGAAAGTACAA  260

Query  145  TATAGAAAACTAAAAGAAGAATGCCACTGCGTTTATAAATGTTCATAA  192
            ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  261  TATAGAAAACTGAAAGAAGAATGTCACTGCGTTTATAAATGTTCATAA  308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6453816109


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5