BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51810.1 Length=2666 Score E Sequences producing significant alignments: (Bits) Value Ahg914333 jgi|Araly1|914333|Al_scaffold_0001_4587 507 2e-142 > Ahg914333 jgi|Araly1|914333|Al_scaffold_0001_4587 Length=564 Score = 507 bits (274), Expect = 2e-142 Identities = 409/474 (86%), Gaps = 10/474 (2%) Strand=Plus/Plus Query 2142 ATGGTTCATAGAGATGTTAAAACCACAAATATATTGTTGAATGAACA-TTTCGATACCAA 2200 ||||||||||| || || ||||||||||||||||||||||||||||| ||| || |||| Sbjct 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTT-GAGGCCAA 59 Query 2201 ACTTGCTGATTTTGGGCTTTCGAGATCATTCCCGATAGAAGGGGAAACTCATGTATCAAC 2260 ||||||||||||||| |||||||| ||||| || || ||||| || |||||||| ||||| Sbjct 60 ACTTGCTGATTTTGGACTTTCGAGGTCATTTCCAATTGAAGGCGAGACTCATGTGTCAAC 119 Query 2261 TGTTGTTGCTGGAACTATTGGTTACCTCGATCCCGAATATTACCGAACAAATTGGTTGAC 2320 ||||||||||| |||||||| ||||| ||||||||||||||||| |||||| ||||||| Sbjct 120 AGTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTGAC 179 Query 2321 GGAGAAA-AGTGATGTGTATAGTTTTGG-AGTTGTATTATTGGTGATGATTACAAACCAA 2378 || ||| ||||| || || |||||||| | ||||| |||||| ||| ||||||||| || Sbjct 180 AGA-AAAGAGTGACGTCTACAGTTTTGGTA-TTGTAATATTGGAGATAATTACAAACAAA 237 Query 2379 CCCGTGATAGACCAAAACCGCGAAAAGAGACATATAGCAGAATGGGTGGGAGGAATGCTT 2438 || ||||| ||||||||||| |||||| |||| |||||||||||||| ||| ||||||| Sbjct 238 CCAGTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCTT 297 Query 2439 ACGAAAGGAGACATCAAAAGTATTACTGATCCAAATCTCCTTGGAGATTATAATTCTGGT 2498 || ||||||||||||||||| ||||| ||||||| ||||| ||||||||| | |||||| Sbjct 298 ACAAAAGGAGACATCAAAAGCATTACGGATCCAAGTCTCCATGGAGATTACGACTCTGGT 357 Query 2499 TCTGTTTGGAAAGCTGTTGAACTAGCAATGTCATGTATGAATCCTTCTTCGATGACA-AG 2557 || |||||||||||||| ||| | |||||||| ||| |||||||||||||||| | | || Sbjct 358 TCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGTCTGAATCCTTCTTCGATAA-ATAG 416 Query 2558 ACCGACAATGTCTCAAGTTGTTTTTGAACTGAAA-GAGTGTTTGGCCTCTGAAA 2610 |||||||||| |||||||||||| |||||| ||| |||||||| || || |||| Sbjct 417 ACCGACAATGACTCAAGTTGTTTCTGAACT-AAACGAGTGTTTAGCATCAGAAA 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100558246800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5