BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51810.1
Length=2666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914333 jgi|Araly1|914333|Al_scaffold_0001_4587 507 2e-142
> Ahg914333 jgi|Araly1|914333|Al_scaffold_0001_4587
Length=564
Score = 507 bits (274), Expect = 2e-142
Identities = 409/474 (86%), Gaps = 10/474 (2%)
Strand=Plus/Plus
Query 2142 ATGGTTCATAGAGATGTTAAAACCACAAATATATTGTTGAATGAACA-TTTCGATACCAA 2200
||||||||||| || || ||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTT-GAGGCCAA 59
Query 2201 ACTTGCTGATTTTGGGCTTTCGAGATCATTCCCGATAGAAGGGGAAACTCATGTATCAAC 2260
||||||||||||||| |||||||| ||||| || || ||||| || |||||||| |||||
Sbjct 60 ACTTGCTGATTTTGGACTTTCGAGGTCATTTCCAATTGAAGGCGAGACTCATGTGTCAAC 119
Query 2261 TGTTGTTGCTGGAACTATTGGTTACCTCGATCCCGAATATTACCGAACAAATTGGTTGAC 2320
||||||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 120 AGTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTGAC 179
Query 2321 GGAGAAA-AGTGATGTGTATAGTTTTGG-AGTTGTATTATTGGTGATGATTACAAACCAA 2378
|| ||| ||||| || || |||||||| | ||||| |||||| ||| ||||||||| ||
Sbjct 180 AGA-AAAGAGTGACGTCTACAGTTTTGGTA-TTGTAATATTGGAGATAATTACAAACAAA 237
Query 2379 CCCGTGATAGACCAAAACCGCGAAAAGAGACATATAGCAGAATGGGTGGGAGGAATGCTT 2438
|| ||||| ||||||||||| |||||| |||| |||||||||||||| ||| |||||||
Sbjct 238 CCAGTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCTT 297
Query 2439 ACGAAAGGAGACATCAAAAGTATTACTGATCCAAATCTCCTTGGAGATTATAATTCTGGT 2498
|| ||||||||||||||||| ||||| ||||||| ||||| ||||||||| | ||||||
Sbjct 298 ACAAAAGGAGACATCAAAAGCATTACGGATCCAAGTCTCCATGGAGATTACGACTCTGGT 357
Query 2499 TCTGTTTGGAAAGCTGTTGAACTAGCAATGTCATGTATGAATCCTTCTTCGATGACA-AG 2557
|| |||||||||||||| ||| | |||||||| ||| |||||||||||||||| | | ||
Sbjct 358 TCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGTCTGAATCCTTCTTCGATAA-ATAG 416
Query 2558 ACCGACAATGTCTCAAGTTGTTTTTGAACTGAAA-GAGTGTTTGGCCTCTGAAA 2610
|||||||||| |||||||||||| |||||| ||| |||||||| || || ||||
Sbjct 417 ACCGACAATGACTCAAGTTGTTTCTGAACT-AAACGAGTGTTTAGCATCAGAAA 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100558246800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5