BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51830.1
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923683 jgi|Araly1|923683|scaffold_104964.1 752 0.0
> Ahg923683 jgi|Araly1|923683|scaffold_104964.1
Length=1046
Score = 752 bits (407), Expect = 0.0
Identities = 475/507 (94%), Gaps = 7/507 (1%)
Strand=Plus/Plus
Query 8 tttttttt--ATAAACGATTGTGTCAGGTTCCCGGATGATGTGTATGACCGAAAATGGTA 65
|||||||| |||||||||||| |||||||||||||||||| ||||| || ||||||||
Sbjct 117 TTTTTTTTGGCTAAACGATTGTGACAGGTTCCCGGATGATGTCTATGATCGGAAATGGTA 176
Query 66 CCCGATCTTCCAGAACTCATGGACGCAAGTAACTACGAATCTCAATGTAAATATTAGCAC 125
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 177 CCCGGTCTTCCAGAACTCATGGACGCAAGTAACTACGAATCTCAATCTAAATATTAGCAC 236
Query 126 TA--T-TTATGAACTACCACAAAGCGTAATGTCAACAGCCGCGACGCCGCTAAATGCTAA 182
|| | |||||||||||||||| | |||||| |||||||||| ||||||||||| ||||
Sbjct 237 TATTTATTATGAACTACCACAAGGTGTAATGGCAACAGCCGCAACGCCGCTAAACACTAA 296
Query 183 TGCGACCTTGAACATTACATGGACAATAGAGCCTCCTACTACACCATTTTACTCCTACAT 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCGACCTTGAACATTAAATGGACAATAGAGCCTCCTACTACACCATTTTACTCCTACAT 356
Query 243 TCACTTTGCAGAGCTTCAATCTCTAAGGGCCAATGATACAAGAGAATTCAATGTGACGTT 302
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 357 TCACTTTGCAGAGCTTCAATCTCTAAGGGCAAATGATACACGAGAATTCAATGTGACGTT 416
Query 303 GAATGGGGAGTATACAATTGGACCTTATAGTCCTAAACCGCTAAAAACCGAAACCATACA 362
|||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GAATGGAGAATATACATTTGGACCTTATAGTCCTAAACCGCTAAAAACCGAAACCTTACA 476
Query 363 AGACTTAAGCCCCGAGCAATGTAATGGAGGGGCGTGTATTTTGCAGCTTGTGGAGACGCT 422
|||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||| |
Sbjct 477 AGACTTAAGCCCTGAGCAATGTACTGGAGGGGCATGTATTTTGCAGCTTGTGAAGACG-T 535
Query 423 -GAAATCAACTCTTCCGCCTTTACTTAATGCTATTGAGGCTTTCACTGTGATTGATTTCC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAAAATCAACTCTTCCGCCTTTACTTAATGCTATTGAGGCTTTCACTGTGATTGATTTCC 595
Query 482 CGCAAATGGAGACAAATGAAGATGATG 508
|||||||||||||||||||||||||||
Sbjct 596 CGCAAATGGAGACAAATGAAGATGATG 622
Score = 521 bits (282), Expect = 6e-147
Identities = 351/385 (91%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 658 TTATCTTCAAGTGGTTTAAATGGGGTCATTACACAAGGCATTCAAAATCTAACCCATCTT 717
||||||||||||||||||| ||||||||| ||||||||| || |||||||||||||||||
Sbjct 625 TTATCTTCAAGTGGTTTAACTGGGGTCATCACACAAGGCTTTAAAAATCTAACCCATCTT 684
Query 718 CAATACTTGGACTTGTCAGATAATAATTTAACTGGTGATATACCTAAATTTCTAGCTGAC 777
|||||| |||||||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 685 CAATACCTGGACTTGTCTGATAACAATTTAACTGGAGAAATACCTAAATTTCTAGCTGAC 744
Query 778 ATACAATCACTCTTGGTTATAAACTTAAGTGGTAATAATCTCACTGGATCGGTGCCTCTC 837
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 745 ATCCAATCACTCTTGGTTATAAACTTAAGTGGTAATAATCTCACTGGCTCGGTTCCTTTC 804
Query 838 TCACTTCTTCAGAAGAAAGGATTGAAATTAAATGTCGAAGGCAACCCTCATCTTCTTTGC 897
||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||
Sbjct 805 TCACTTCTTCAGAAGAAAGGATTGAAACTAAATGTCCAAGGCAATCCTCATCTCCTTTGC 864
Query 898 ACAGATGGTTTATGTGTTAACAAAGGAGATGGACATAAGAAAAAGAGCATCATAGCACCA 957
|||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||
Sbjct 865 ACAGATGGTTTATGTGCAAACAAAGGAGATGAACATAAGAAAAAGAGCATCACAGTACCA 924
Query 958 GTGGTCGCATCAATTGCTTCAATAGCTATTCTTATAGGTGCATTGGTTCTGT-TTTTTGT 1016
| |||||||| ||||||||||||||| ||||||| ||||||||||||| | ||||| |
Sbjct 925 CTTGTCGCATCGATTGCTTCAATAGCTGGTCTTATATGTGCATTGGTTCT-TCTTTTTAT 983
Query 1017 TCTTAAAAAGAAAACGCAATCAAAA 1041
||| ||||||||||||| || ||||
Sbjct 984 TCTCAAAAAGAAAACGCCATTAAAA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5