BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51900.1
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914348 jgi|Araly1|914348|Al_scaffold_0001_4602 1256 0.0
> Ahg914348 jgi|Araly1|914348|Al_scaffold_0001_4602
Length=2244
Score = 1256 bits (680), Expect = 0.0
Identities = 928/1043 (89%), Gaps = 35/1043 (3%)
Strand=Plus/Plus
Query 631 GAGTCACTACACGAGGTGTATAAATTT-TGCCTCACCGATGT---TGATGAGAGAAGCAA 686
||||||| ||| ||||||||||||||| | |||||||||||| || |||||||||||
Sbjct 652 GAGTCACCACAGGAGGTGTATAAATTTAT-CCTCACCGATGTCAAAGACGAGAGAAGCAA 710
Query 687 GAAAGAGACATCAATGAAAGATGATTACATAGAACA--T-AAGAAGTCTACTAGATTGTT 743
|||||||||||||||||||||||||||||||||| | | | |||| | ||||||||||
Sbjct 711 GAAAGAGACATCAATGAAAGATGATTACATAGAAGATGTGATGAAG--T-CTAGATTGTT 767
Query 744 GGCTGAAAATGCGAAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGGAATCTAAACC 803
||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 768 GGCTGAAAAAGCGAAGAAGTCAGGTCACCGTTTAGAAATATTAAGGCCGGAATATAAACC 827
Query 804 TGAGACTGAAAAAGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGA 863
||||| |||||| |||| |||||||||||||||||| |||||| ||||||||| ||||
Sbjct 828 TGAGATTGAAAATCAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATATGGA 887
Query 864 TATTAGTTGTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGA 923
||||| | |||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 888 TATTACATCTTATGAAGAGCCACCACACGAGGTGTATAAATTTAGCATCACCAATTTCGA 947
Query 924 AGAAGAGATAATGGAAGATGATTACAG-AGAAGATATGAAGTGTAGAATGTTGGATGATA 982
||||| ||||||||||||||||||| | ||||||| |||||||||||| ||||||||| |
Sbjct 948 AGAAGGGATAATGGAAGATGATTAC-GTAGAAGATGTGAAGTGTAGAACGTTGGATGAAA 1006
Query 983 TAGTGAAGAATTCCGGTCACCGTGTAGAAATATCAAGGCCGGAATATTATAAACCTGAGA 1042
|| ||||||| |||||||||||| |||||||||||| | ||||| | |||||||||||||
Sbjct 1007 TAATGAAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAA-A-TATAAACCTGAGA 1063
Query 1043 TTGAAAAACAGGTATATGAAAAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTA 1102
|||||||||||| |||||| ||||||||||||||||||| ||||||||| | ||||||
Sbjct 1064 ATGAAAAACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTA 1123
Query 1103 GATCTTATGAAGAGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGATTTGGAAGAAG 1162
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 1124 GATCTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 1183
Query 1163 AGATAATGGAAAATGACTCCATAGAAGGTGTGAAGTGTAGAATGTTGGATGAAATAATGA 1222
||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1184 AGATAATGGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTGGATGAAATAACGA 1243
Query 1223 AGAAGTCCGGTCACCATTTAAAAATATCAAGGCCG-GAATATAAACCTGAGATTGAAAAA 1281
||||||||||||||| |||| ||||||||||| || |||||||||||||||| |||||||
Sbjct 1244 AGAAGTCCGGTCACCGTTTAGAAATATCAAGG-CGTGAATATAAACCTGAGAATGAAAAA 1302
Query 1282 CAGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTAT 1341
||||| |||||||||| ||||||||||||||| ||||| ||||||||||| |||| ||||
Sbjct 1303 CAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGAGATCTTAT 1362
Query 1342 GAAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1401
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1363 GAAGAGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1422
Query 1402 GAAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTGGATGATATATTGAAGAAGTCC 1461
|||||||||||||| |||| | ||||||||||| |||||||||| ||| |||| | |||
Sbjct 1423 GAAGATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGAA-A--TCC 1479
Query 1462 GGTCACCGTTTAGAAATATCAAGGCGGCAATATAATAAACCTGAGATTGAAATACAGGTC 1521
||||||||||||||||||||||| ||| ||||||| | ||||||||||||| |||||||
Sbjct 1480 GGTCACCGTTTAGAAATATCAAGCCGGGAATATAA-A--CCTGAGATTGAAAAACAGGTC 1536
Query 1522 AATGAA-AAGGAAGAGAAGAAAGTAATCAATACGGATATGGATATTAGATATGATGATGA 1580
|||||| || |||||||||||||||| |||| | ||||||||||| || |||| |
Sbjct 1537 AATGAAGAAA-AAGAGAAGAAAGTAATGAATA----T--GGATATTAGATGTGCTGATCA 1589
Query 1581 GTCACCAGAAGAGGTGGAGACATATTCTAGTCTCACGGATGATGAAGAAGAGAGAAGCAA 1640
||||||| | |||||| | | | ||| || ||||| |||| ||||||||||||||||||
Sbjct 1590 GTCACCATACGAGGTGTATAAA-ATT--AGCCTCACCGATGTTGAAGAAGAGAGAAGCAA 1646
Query 1641 GGAAGATACATCAATGGAAGATG 1663
|||||||||||||||||||||||
Sbjct 1647 GGAAGATACATCAATGGAAGATG 1669
Score = 846 bits (458), Expect = 0.0
Identities = 797/952 (84%), Gaps = 58/952 (6%)
Strand=Plus/Plus
Query 750 AAAT-GCGAA-GAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGGAATC-TAAACCTGA 806
|||| || || ||| || ||| || ||||||||||| |||||| |||| | |||| ||||
Sbjct 521 AAATAGCCAAGGAA-TCGGGTTACCGTTTAGAAATACTAAGGCTGGAA-CATAAATCTGA 578
Query 807 GACTGAAAA-AGAGGTCA-ATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGAT-GTGGA 863
|| |||||| | |||| | ||| | | ||||||||| |||||||||| |||| | |
Sbjct 579 GAATGAAAACA-AGGT-ATTTGACGTGAAAGAGAAGAAAGTAATGGATTTGGATAAAGAA 636
Query 864 TATTAGTTGTTATG-AAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGAT-T-- 919
| || | | | ||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 637 GA-GAGAAG-CAAGAAAGAGTCACCACAGGAGGTGTATAAATTTATCCTCACCGATGTCA 694
Query 920 ---TC-------G-AAG-AAGAG--AT-AATGGAAGATGATTACAGAGAAGA--T-ATGA 961
| | ||| ||||| || |||| |||||||||||| |||||| | ||||
Sbjct 695 AAGACGAGAGAAGCAAGAAAGAGACATCAATGAAAGATGATTACATAGAAGATGTGATGA 754
Query 962 AGTGTAGAATGTTGGATGATATAGTGAAGAATTCCGGTCACCGTGTAGAAATATCAAGGC 1021
||| |||| |||||| ||| | || |||||| || ||||||||| ||||||||| |||||
Sbjct 755 AGTCTAGATTGTTGGCTGAAAAAGCGAAGAAGTCAGGTCACCGTTTAGAAATATTAAGGC 814
Query 1022 CGGAATATTATAAACCTGAGATTGAAAAACAGGTATATGAAAAGGAAGAGAAGAAAGTAA 1081
||| | | |||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 815 CGG-A-A-TATAAACCTGAGATTGAAAATCAGGTTTATGAAGAGGAAGAGAAGAAAGTAA 871
Query 1082 TGGATCCGGATATCTATATTAGATCTTATGAAGAGTCACCAAACGAGGTGTATAAATTTA 1141
| ||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 872 TTGATCCGGATATGGATATTACATCTTATGAAGAGCCACCACACGAGGTGTATAAATTTA 931
Query 1142 GCCTCACTGATTTGGAAGAAGAGATAATGGAAAATGACTCCATAGAAGGTGTGAAGTGTA 1201
|| |||| |||| ||||||| |||||||||| |||| | | |||||| |||||||||||
Sbjct 932 GCATCACCAATTTCGAAGAAGGGATAATGGAAGATGATTACGTAGAAGATGTGAAGTGTA 991
Query 1202 GAATGTTGGATGAAATAATGAAGAAGTCCGGTCACCATTTAAAAATATCAAGGCCGG-AA 1260
||| ||||||||||||||||||||| |||||||||| |||| ||||||||| | ||| ||
Sbjct 992 GAACGTTGGATGAAATAATGAAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAAA 1050
Query 1261 TATAAACCTGAGATTGAAAAACAGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCA 1320
||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1051 TATAAACCTGAGAATGAAAAACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCG 1110
Query 1321 GATGTGGATATTAGATGTTATGAAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACC 1380
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1111 GATGTGGATATTAGATCTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACC 1170
Query 1381 GATTTCGAAGAAGAGATAATGGAAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTG 1440
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1171 GATTTCGAAGAAGAGATAATGGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTG 1230
Query 1441 GATGATATATTGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGGCG-GCAATATAATAA 1499
||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 1231 GATGAAATAACGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGGCGTG-AATATAA-A- 1287
Query 1500 ACCTGAGATTGAAATACAGGTCAATGAAAAGGAAGAGAAGAAAGTAATCAATACGGATAT 1559
||||||| ||||| |||||| ||||| ||| ||||||||||||||| || ||||| |
Sbjct 1288 -CCTGAGAATGAAAAACAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGT 1346
Query 1560 GGATATTAGATATGATGATGAGTCACCAGA-AGAGGTGGAGACATATTCTAGTCTCACGG 1618
|||||| |||| | |||| ||||||||| | | ||||| | | | ||| ||| ||||| |
Sbjct 1347 GGATATGAGATCTTATGAAGAGTCACCACACA-AGGTGTATA-A-ATT-TAGCCTCACCG 1402
Query 1619 ATGAT-GAAGAAGAGAGAA-GCAAGGAAGAT-ACATCAATGGAAGATGTGAA 1667
|| | |||||||||| || | ||| | ||| ||||| | ||||||||||
Sbjct 1403 ATT-TCGAAGAAGAGATAATGGAAG-ATGATTACATC---G-AAGATGTGAA 1448
Score = 784 bits (424), Expect = 0.0
Identities = 629/724 (87%), Gaps = 30/724 (4%)
Strand=Plus/Plus
Query 699 AATGAAAGATGATTACATAGAACATAAGAAGTCTACTAGATTGTTGGCTGAAAAT-GCGA 757
|||| ||||||||||| ||||| || |||| | |||| ||||| || |||| ||
Sbjct 957 AATGGAAGATGATTACGTAGAAGATGTGAAG--T-GTAGAACGTTGGATG-AAATAATGA 1012
Query 758 AGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGG-AATCTAAACCTGAGACTGAAAAA 816
|||| ||||||||| |||||||||||| || | ||| ||| ||||||||||| |||||||
Sbjct 1013 AGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAAATATAAACCTGAGAATGAAAAA 1071
Query 817 GAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGATATTAGTTGTTAT 876
|||| |||||||||||||||||| |||||| |||||||||||||||||||| | ||||
Sbjct 1072 CAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTAGATCTTAT 1131
Query 877 GAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1191
Query 937 GAAGATGATTACAGAGAAGATATGAAGTGTAGAATGTTGGATGATATAGTGAAGAATTCC 996
||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||| |||
Sbjct 1192 GAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTGGATGAAATAACGAAGAAGTCC 1251
Query 997 GGTCACCGTGTAGAAATATCAAGGCCG-GAATATTATAAACCTGAGATTGAAAAACAGGT 1055
||||||||| ||||||||||||||| | |||||| | || ||||||| ||||||||||||
Sbjct 1252 GGTCACCGTTTAGAAATATCAAGGC-GTGAATAT-A-AA-CCTGAGAATGAAAAACAGGT 1307
Query 1056 ATATGAAAAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTAGATCTTATGAAGA 1115
|||||| ||| ||||||||||||||| ||||||||| | |||| ||||||||||||||
Sbjct 1308 TTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGAGATCTTATGAAGA 1367
Query 1116 GTCACCAAACGAGGTGTATAAATTTAGCCTCACTGATTTGGAAGAAGAGATAATGGAAAA 1175
||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 1368 GTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATGGAAGA 1427
Query 1176 TGACTCCATAGAAGGTGTGAAGTGTAGAATGTTGGATGAAATAATGAAGAAGTCCGGTCA 1235
||| | ||| |||| ||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 1428 TGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGAA-A--TCCGGTCA 1484
Query 1236 CCATTTAAAAATATCAAGGCCGG-AATATAAACCTGAGATTGAAAAACAGGT-ATATGAA 1293
|| |||| |||||||||| |||| |||||||||||||||||||||||||||| | |||||
Sbjct 1485 CCGTTTAGAAATATCAAG-CCGGGAATATAAACCTGAGATTGAAAAACAGGTCA-ATGAA 1542
Query 1294 GAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTATGAAGAGTCACCA 1353
|| ||||||||||||||||| || | || | ||||||||||| ||| ||||||||
Sbjct 1543 GAAAAAGAGAAGAAAGTAATGAAT--A--TG-G-ATATTAGATGTGCTGATCAGTCACCA 1596
Query 1354 CACGAGGTGTCTAAATTTAGCCTCACCGAT-TTCGAAGAAGAGATAATGGAAG-ATGATT 1411
||||||||| |||| |||||||||||||| || |||||||||| || | ||| | |||
Sbjct 1597 TACGAGGTGTATAAAATTAGCCTCACCGATGTT-GAAGAAGAGAGAA-GCAAGGAAGAT- 1653
Query 1412 ACAT 1415
||||
Sbjct 1654 ACAT 1657
Score = 699 bits (378), Expect = 0.0
Identities = 562/645 (87%), Gaps = 35/645 (5%)
Strand=Plus/Plus
Query 1676 ACGAGGTGTACAAATTTAGCCTCACCGATATCAAAGAAGAGAGAAGCAATGAAGATACAT 1735
|||||||||| ||| |||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 1598 ACGAGGTGTATAAAATTAGCCTCACCGATGTTGAAGAAGAGAGAAGCAAGGAAGATACAT 1657
Query 1736 CAATGGAAGATTG-TTGCATAGAAGA-GGCTCAAGTCGGAAAAGATCAAAGAGTCTTCAG 1793
|||||||||| || || ||||||||| || |||||| ||||||||||||||||| |||||
Sbjct 1658 CAATGGAAGA-TGATTACATAGAAGATGG-TCAAGTGGGAAAAGATCAAAGAGTATTCAG 1715
Query 1794 ATTCAGAGAAAGTAGTGAAGAGAAGAGAAAATCCTCATCATCACCATTATCACCACTAAC 1853
|||| || ||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1716 ATTCCGAAAAAGTAGTGAAGAGAAGAGAAAA--C-CATCATCACCATTATCAACACTAAT 1772
Query 1854 AGAGTTTAGGGATATGGAGAGTTTGACGTATTACATGAGGCAAA-AAGGGA-TGCATCGA 1911
||||||||| ||| ||||||||||||||||||||||||||||| || ||| | |||| |
Sbjct 1773 GGAGTTTAGGAATACGGAGAGTTTGACGTATTACATGAGGCAAACAA-GGACT-CATCAA 1830
Query 1912 AGAAGAAGAAGATCATCAACATCACCACATTGTTGCCATAATGTAGTATACAATGAGTTT 1971
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1831 AGAAGAAGAAGATCATCAACATCACCACATTGTCGCCATTGTGTAGAATACAATGAGTTC 1890
Query 1972 AAAGTGACGAAGGAAGAAGAAGA-G--GAAGAA-A-GA----CAAAGATTAACAACCAA- 2021
||||||| ||||||||||||||| | |||||| | || ||||| |||| ||||||
Sbjct 1891 AAAGTGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGACAAAGCTTAAAAACCAAG 1950
Query 2022 ACGTGTTCATTCTAAGCTTCATGAATACGAACAA-TTTTTAACTCAGTTTAAAAAGAAGA 2080
| ||||||||| ||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 1951 AA-TGTTCATTCGAAGCTTCATGAGTACGAA-AAGTTTTTAACTCAGTTTAAAAAGAAGA 2008
Query 2081 AGGAAGAAGAAAACGAGAGACGAAGATTAT-CACCCAAAGACTTTGAGCCTACGCTTCCT 2139
|||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 2009 AGGAAGCAGAAAACGAGAGACGAAGATTATTC-CCCAAAGGCTTTGAGCCTACGCTTCCT 2067
Query 2140 GATTACGACCAAGTGATTACTCGCTTTAGAGTGCTGGAGA-AGGAAGAAGAAGAAAGACG 2198
||||||||| |||| |||||||| ||||||| ||||||| | |||||||||||||||
Sbjct 2068 GATTACGACGAAGTTATTACTCGGTTTAGAGCGCTGGAGGCAC-AAGAAGAAGAAAGAC- 2125
Query 2199 AA-GATTAGCA--A-CAAAACATGTTCATCCTAAGCTTCCTGATTACGACCAGATTGCTA 2254
|| |||||||| | |||||||| |||||||||| ||||||||||||||||| |||| ||
Sbjct 2126 AACGATTAGCAGCAACAAAACATATTCATCCTAACCTTCCTGATTACGACCAAATTGTTA 2185
Query 2255 CTAAGTTTAAA-CTCCTGAAGGAGGTAGAAAAAGAAAGACGAAGA 2298
|| |||||||| | | | ||||| | ||||||| || ||| ||||
Sbjct 2186 CTCAGTTTAAAGCGC-TAAAGGAAGAAGAAAAACAAGGACAAAGA 2229
Score = 582 bits (315), Expect = 3e-165
Identities = 536/640 (84%), Gaps = 26/640 (4%)
Strand=Plus/Plus
Query 1 ATGTTTGGTTTCTCGTTCTCTCGACGG-AGAAAATCAAACGCTTTCACATGGAAAGTTTT 59
||||||||||||| | ||| ||||||| || ||| |||| ||||||||||||||||| ||
Sbjct 1 ATGTTTGGTTTCTTGCTCTGTCGACGGAAG-AAAGCAAAAGCTTTCACATGGAAAGTGTT 59
Query 60 GAAACA-GCTTCAATCTCGCCTTATGCTACTCAAGTC-CCAGAAGTACGCAAAATCTAGA 117
| || | |||||||||||| ||| |||||||||| | ||| ||||| |||||| |||||
Sbjct 60 G-AAGATGCTTCAATCTCGTCTTCTGCTACTCAA-ACACCAAAAGTATGCAAAAGCTAGA 117
Query 118 CACCTACGTGCT-GATATTGTTGACTTCATCCGAAGCAACGACTCCAAGAGTGCACTCTT 176
|| ||||| | ||||||| ||||| |||||||||||| || |||| | ||||||| |
Sbjct 118 CATATACGT-ATGGATATTGCTGACTACATCCGAAGCAATGAATCCACCAATGCACTCCT 176
Query 177 CCGAACCGAACAGCTCTTGCTCGTCGAAAACGCGATTACAATCTACGGTTTTTTGCTCAA 236
|||||||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||| ||
Sbjct 177 CCGAACCGAACAGCTCTTCCTCGTCGAAAACTCGATTTCAATCTACGATTTGTTGCTTAA 236
Query 237 GTTCACTGATTTCATCCTCCTCCGCTTCTCCCCCAGTAAAAAACACAGTTGTTTATTGGT 296
|||||| |||||||| ||| ||||||||||| | | ||||||| | | | ||||
Sbjct 237 GTTCACAGATTTCATAATCCGACGCTTCTCCCCAATTCGAAAACAC-G--GAGAACTGGT 293
Query 297 TAATGATGATACTTCCGAAGCAGTTTCGAGTCTGATTTTTGCATCGGTCAAGTGTAGAGA 356
|||||| |||||||| ||||||||||||| ||| || | ||||||||| ||||||| |||
Sbjct 294 TAATGACGATACTTCGGAAGCAGTTTCGACTCTTATCTATGCATCGGTGAAGTGTAAAGA 353
Query 357 AATACCTGAACTGC-TAATTATTAGCGAGCTGGTTGGTCAACGTTATGGTCAACGTTATG 415
||||||||| ||| || || | |||||||||||||||||||||||||||||||||||||
Sbjct 354 TATACCTGAAATGCTTACTT-TAAGCGAGCTGGTTGGTCAACGTTATGGTCAACGTTATG 412
Query 416 TAACAACTGCTATTCAGGTCCCTCCC-GGGAATCTTGTAAACACTGAGATCAAAGAGAAA 474
||||||||||||||||||| | |||| ||||||||||||||||| ||||||||| |||||
Sbjct 413 TAACAACTGCTATTCAGGTTC-TCCCTGGGAATCTTGTAAACACGGAGATCAAAAAGAAA 471
Query 475 TTGAAG-TCA-ACTTCAGTAGTATCCGAA-ACTGAT-AAGTGTAGAGTAATGGAGGAGAT 530
||| | | | | ||||||| | ||||| | || | |||||| || | ||||||| ||
Sbjct 472 TTGTCGAT-ATA-TTCAGTA-T--CCGAACA-TG-TGAAGTGTCGAATGGTGGAGGAAAT 524
Query 531 AGCCAAGGAGTCGGGTTACCGTTTAGAAATTCTAGGGCTGGGATATAAATCTGAGATTGA 590
||||||||| |||||||||||||||||||| ||| |||||| | |||||||||||| |||
Sbjct 525 AGCCAAGGAATCGGGTTACCGTTTAGAAATACTAAGGCTGGAACATAAATCTGAGAATGA 584
Query 591 CAACGAGGTTTTTGACTTGGAAGAAAAGAACGTAATGGAT 630
||| |||| |||||| || |||| ||||| |||||||||
Sbjct 585 AAACAAGGTATTTGACGTGAAAGAGAAGAAAGTAATGGAT 624
Score = 549 bits (297), Expect = 3e-155
Identities = 607/748 (81%), Gaps = 55/748 (7%)
Strand=Plus/Plus
Query 952 GAAGATATGAAGTGTAGAATGTTGGATGATATAGTGAA-GAATTCCGGTCACCGTGTAGA 1010
||| || |||||||| ||||| |||| || |||| || ||| || ||| ||||| ||||
Sbjct 493 GAACATGTGAAGTGTCGAATGGTGGAGGAAATAGCCAAGGAA-TCGGGTTACCGTTTAGA 551
Query 1011 AATATC-AAGGCCGGAATATTATAAACCTGAGATTGAAAAAC-AGGTATATGAAAAGGAA 1068
|||| | ||||| || | | ||||| |||||| || ||||| |||||| ||| | ||
Sbjct 552 AATA-CTAAGGCTGG-A-A-CATAAATCTGAGAATG-AAAACAAGGTATTTGACGTGAAA 606
Query 1069 GAGAAGAAAGTAATGGATCCGGAT-ATCTATATTAG-ATCTTATG-AAGAGTCACCAAAC 1125
|||||||||||||||||| |||| | | | || | | | | ||||||||||| |
Sbjct 607 GAGAAGAAAGTAATGGATTTGGATAAAGAAGA-GAGAAGC--AAGAAAGAGTCACCACAG 663
Query 1126 GAGGTGTATAAATTTAGCCTCACTGAT-T----------TG--G-AAG-AAGAG--AT-A 1167
|||||||||||||||| |||||| ||| | | | ||| ||||| || |
Sbjct 664 GAGGTGTATAAATTTATCCTCACCGATGTCAAAGACGAGAGAAGCAAGAAAGAGACATCA 723
Query 1168 ATGGAAA-ATGACTCCATAGAAG--GTG-TGAAGTGTAGAATGTTGGATGAAATAA-TGA 1222
|| |||| |||| | |||||||| ||| |||||| |||| |||||| ||||| || ||
Sbjct 724 AT-GAAAGATGATTACATAGAAGATGTGATGAAGTCTAGATTGTTGGCTGAAA-AAGCGA 781
Query 1223 AGAAGTCCGGTCACCATTTAAAAATATCAAGGCCGGAATATAAACCTGAGATTGAAAAAC 1282
||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 782 AGAAGTCAGGTCACCGTTTAGAAATATTAAGGCCGGAATATAAACCTGAGATTGAAAATC 841
Query 1283 AGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTATG 1342
|||| |||||||||||||||||||||||||| ||||| ||| ||||||||| || |||||
Sbjct 842 AGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATATGGATATTACATCTTATG 901
Query 1343 AAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATGG 1402
||||| ||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||
Sbjct 902 AAGAGCCACCACACGAGGTGTATAAATTTAGCATCACCAATTTCGAAGAAGGGATAATGG 961
Query 1403 AAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTGGATGATATATTGAAGAAGTCCG 1462
||||||||||| |||||| | |||||||||||| ||||||||| ||| ||||||| ||||
Sbjct 962 AAGATGATTACGTAGAAGATGTGAAGTGTAGAACGTTGGATGAAATAATGAAGAAATCCG 1021
Query 1463 GTCACCGTTTAGAAATATCAAGGCGGCAATATAATAAACCTGAGATTGAAATACAGGTCA 1522
||||||||||||||||||||| |||| || ||| ||||||||||| ||||| ||||||
Sbjct 1022 GTCACCGTTTAGAAATATCAAAGCGG-AA-ATA-TAAACCTGAGAATGAAAAACAGGTTT 1078
Query 1523 ATGAAAAGGAAGAGAAGAAAGTAATCAATACGGATATGGATATTAGATATGATGATGAGT 1582
||||| ||||||||||||||||||| || ||||| |||||||||||| | |||| ||||
Sbjct 1079 ATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTAGATCTTATGAAGAGT 1138
Query 1583 CACCAGAAGAGGTGGAGACATATTCTAGTCTCACGGATGAT-GAAGAAGAGAGAA-GCAA 1640
||||| | |||||| | | | ||| ||| ||||| ||| | |||||||||| || | ||
Sbjct 1139 CACCACACGAGGTGTATA-A-ATT-TAGCCTCACCGATT-TCGAAGAAGAGATAATGGAA 1194
Query 1641 GGAAGAT-ACATCAATGGAAGATGTGAA 1667
| | ||| |||| | | ||||||||||
Sbjct 1195 G-ATGATTACAT-A--G-AAGATGTGAA 1217
Score = 496 bits (268), Expect = 4e-139
Identities = 456/540 (84%), Gaps = 40/540 (7%)
Strand=Plus/Plus
Query 631 GAGTCACTACACGAGGTGTATAAATTTTGCCTCACCGATGTTGATGAGAGAAGCAAGAAA 690
||||||| ||||||||||||||||||| |||||||||| || | | ||| ||
Sbjct 1135 GAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGA--TT--T------CG-AAG-AA 1182
Query 691 GAGACATCAATGAAAGATGATTACATAGAACATAAGAAGTCTACTAGATTGTTGGCTGAA 750
||| || |||| ||||||||||||||||| || |||| | |||| |||||| || |
Sbjct 1183 GAG--AT-AATGGAAGATGATTACATAGAAGATGTGAAG--T-GTAGAATGTTGGATG-A 1235
Query 751 AAT-GCGAAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCG-GAATCTAAACCTGAGA 808
||| ||||||||||||||||| |||||||||||| |||| || |||| |||||||||||
Sbjct 1236 AATAACGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGG-CGTGAATATAAACCTGAGA 1294
Query 809 CTGAAAAAGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGATATTA 868
||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||| |
Sbjct 1295 ATGAAAAACAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGA 1354
Query 869 GTTGTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 928
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1355 GATCTTATGAAGAGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 1414
Query 929 AGATAATGGAAGATGATTACAGAGAAGATATGAAGTGTAGAATGTTGGATGATATAGTGA 988
||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||| |||
Sbjct 1415 AGATAATGGAAGATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGA 1474
Query 989 AGAATTCCGGTCACCGTGTAGAAATATCAAGGCCGGAATATTATAAACCTGAGATTGAAA 1048
| | | ||||||||||| ||||||||||||| |||| | || ||||||||||||||||||
Sbjct 1475 A-A-T-CCGGTCACCGTTTAGAAATATCAAG-CCGGGA-AT-ATAAACCTGAGATTGAAA 1528
Query 1049 AACAGGT-ATATGAA-AAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTAGATC 1106
||||||| | ||||| || ||||||||||||||||| | |||| |||||||||
Sbjct 1529 AACAGGTCA-ATGAAGAAA-AAGAGAAGAAAGTAATG-A-----ATATGGATATTAGATG 1580
Query 1107 TTATGAAGAGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGAT-TTGGAAGAAGAGA 1165
| ||| |||||||| |||||||||||||| |||||||||| ||| ||| |||||||||
Sbjct 1581 TGCTGATCAGTCACCATACGAGGTGTATAAAATTAGCCTCACCGATGTTG-AAGAAGAGA 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87569473255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5