BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51900.1 Length=2325 Score E Sequences producing significant alignments: (Bits) Value Ahg914348 jgi|Araly1|914348|Al_scaffold_0001_4602 1256 0.0 > Ahg914348 jgi|Araly1|914348|Al_scaffold_0001_4602 Length=2244 Score = 1256 bits (680), Expect = 0.0 Identities = 928/1043 (89%), Gaps = 35/1043 (3%) Strand=Plus/Plus Query 631 GAGTCACTACACGAGGTGTATAAATTT-TGCCTCACCGATGT---TGATGAGAGAAGCAA 686 ||||||| ||| ||||||||||||||| | |||||||||||| || ||||||||||| Sbjct 652 GAGTCACCACAGGAGGTGTATAAATTTAT-CCTCACCGATGTCAAAGACGAGAGAAGCAA 710 Query 687 GAAAGAGACATCAATGAAAGATGATTACATAGAACA--T-AAGAAGTCTACTAGATTGTT 743 |||||||||||||||||||||||||||||||||| | | | |||| | |||||||||| Sbjct 711 GAAAGAGACATCAATGAAAGATGATTACATAGAAGATGTGATGAAG--T-CTAGATTGTT 767 Query 744 GGCTGAAAATGCGAAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGGAATCTAAACC 803 ||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||| Sbjct 768 GGCTGAAAAAGCGAAGAAGTCAGGTCACCGTTTAGAAATATTAAGGCCGGAATATAAACC 827 Query 804 TGAGACTGAAAAAGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGA 863 ||||| |||||| |||| |||||||||||||||||| |||||| ||||||||| |||| Sbjct 828 TGAGATTGAAAATCAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATATGGA 887 Query 864 TATTAGTTGTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGA 923 ||||| | |||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 888 TATTACATCTTATGAAGAGCCACCACACGAGGTGTATAAATTTAGCATCACCAATTTCGA 947 Query 924 AGAAGAGATAATGGAAGATGATTACAG-AGAAGATATGAAGTGTAGAATGTTGGATGATA 982 ||||| ||||||||||||||||||| | ||||||| |||||||||||| ||||||||| | Sbjct 948 AGAAGGGATAATGGAAGATGATTAC-GTAGAAGATGTGAAGTGTAGAACGTTGGATGAAA 1006 Query 983 TAGTGAAGAATTCCGGTCACCGTGTAGAAATATCAAGGCCGGAATATTATAAACCTGAGA 1042 || ||||||| |||||||||||| |||||||||||| | ||||| | ||||||||||||| Sbjct 1007 TAATGAAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAA-A-TATAAACCTGAGA 1063 Query 1043 TTGAAAAACAGGTATATGAAAAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTA 1102 |||||||||||| |||||| ||||||||||||||||||| ||||||||| | |||||| Sbjct 1064 ATGAAAAACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTA 1123 Query 1103 GATCTTATGAAGAGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGATTTGGAAGAAG 1162 |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| Sbjct 1124 GATCTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 1183 Query 1163 AGATAATGGAAAATGACTCCATAGAAGGTGTGAAGTGTAGAATGTTGGATGAAATAATGA 1222 ||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1184 AGATAATGGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTGGATGAAATAACGA 1243 Query 1223 AGAAGTCCGGTCACCATTTAAAAATATCAAGGCCG-GAATATAAACCTGAGATTGAAAAA 1281 ||||||||||||||| |||| ||||||||||| || |||||||||||||||| ||||||| Sbjct 1244 AGAAGTCCGGTCACCGTTTAGAAATATCAAGG-CGTGAATATAAACCTGAGAATGAAAAA 1302 Query 1282 CAGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTAT 1341 ||||| |||||||||| ||||||||||||||| ||||| ||||||||||| |||| |||| Sbjct 1303 CAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGAGATCTTAT 1362 Query 1342 GAAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1401 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1363 GAAGAGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1422 Query 1402 GAAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTGGATGATATATTGAAGAAGTCC 1461 |||||||||||||| |||| | ||||||||||| |||||||||| ||| |||| | ||| Sbjct 1423 GAAGATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGAA-A--TCC 1479 Query 1462 GGTCACCGTTTAGAAATATCAAGGCGGCAATATAATAAACCTGAGATTGAAATACAGGTC 1521 ||||||||||||||||||||||| ||| ||||||| | ||||||||||||| ||||||| Sbjct 1480 GGTCACCGTTTAGAAATATCAAGCCGGGAATATAA-A--CCTGAGATTGAAAAACAGGTC 1536 Query 1522 AATGAA-AAGGAAGAGAAGAAAGTAATCAATACGGATATGGATATTAGATATGATGATGA 1580 |||||| || |||||||||||||||| |||| | ||||||||||| || |||| | Sbjct 1537 AATGAAGAAA-AAGAGAAGAAAGTAATGAATA----T--GGATATTAGATGTGCTGATCA 1589 Query 1581 GTCACCAGAAGAGGTGGAGACATATTCTAGTCTCACGGATGATGAAGAAGAGAGAAGCAA 1640 ||||||| | |||||| | | | ||| || ||||| |||| |||||||||||||||||| Sbjct 1590 GTCACCATACGAGGTGTATAAA-ATT--AGCCTCACCGATGTTGAAGAAGAGAGAAGCAA 1646 Query 1641 GGAAGATACATCAATGGAAGATG 1663 ||||||||||||||||||||||| Sbjct 1647 GGAAGATACATCAATGGAAGATG 1669 Score = 846 bits (458), Expect = 0.0 Identities = 797/952 (84%), Gaps = 58/952 (6%) Strand=Plus/Plus Query 750 AAAT-GCGAA-GAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGGAATC-TAAACCTGA 806 |||| || || ||| || ||| || ||||||||||| |||||| |||| | |||| |||| Sbjct 521 AAATAGCCAAGGAA-TCGGGTTACCGTTTAGAAATACTAAGGCTGGAA-CATAAATCTGA 578 Query 807 GACTGAAAA-AGAGGTCA-ATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGAT-GTGGA 863 || |||||| | |||| | ||| | | ||||||||| |||||||||| |||| | | Sbjct 579 GAATGAAAACA-AGGT-ATTTGACGTGAAAGAGAAGAAAGTAATGGATTTGGATAAAGAA 636 Query 864 TATTAGTTGTTATG-AAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGAT-T-- 919 | || | | | ||||||||||||| |||||||||||||||| |||||||||| | Sbjct 637 GA-GAGAAG-CAAGAAAGAGTCACCACAGGAGGTGTATAAATTTATCCTCACCGATGTCA 694 Query 920 ---TC-------G-AAG-AAGAG--AT-AATGGAAGATGATTACAGAGAAGA--T-ATGA 961 | | ||| ||||| || |||| |||||||||||| |||||| | |||| Sbjct 695 AAGACGAGAGAAGCAAGAAAGAGACATCAATGAAAGATGATTACATAGAAGATGTGATGA 754 Query 962 AGTGTAGAATGTTGGATGATATAGTGAAGAATTCCGGTCACCGTGTAGAAATATCAAGGC 1021 ||| |||| |||||| ||| | || |||||| || ||||||||| ||||||||| ||||| Sbjct 755 AGTCTAGATTGTTGGCTGAAAAAGCGAAGAAGTCAGGTCACCGTTTAGAAATATTAAGGC 814 Query 1022 CGGAATATTATAAACCTGAGATTGAAAAACAGGTATATGAAAAGGAAGAGAAGAAAGTAA 1081 ||| | | |||||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct 815 CGG-A-A-TATAAACCTGAGATTGAAAATCAGGTTTATGAAGAGGAAGAGAAGAAAGTAA 871 Query 1082 TGGATCCGGATATCTATATTAGATCTTATGAAGAGTCACCAAACGAGGTGTATAAATTTA 1141 | ||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct 872 TTGATCCGGATATGGATATTACATCTTATGAAGAGCCACCACACGAGGTGTATAAATTTA 931 Query 1142 GCCTCACTGATTTGGAAGAAGAGATAATGGAAAATGACTCCATAGAAGGTGTGAAGTGTA 1201 || |||| |||| ||||||| |||||||||| |||| | | |||||| ||||||||||| Sbjct 932 GCATCACCAATTTCGAAGAAGGGATAATGGAAGATGATTACGTAGAAGATGTGAAGTGTA 991 Query 1202 GAATGTTGGATGAAATAATGAAGAAGTCCGGTCACCATTTAAAAATATCAAGGCCGG-AA 1260 ||| ||||||||||||||||||||| |||||||||| |||| ||||||||| | ||| || Sbjct 992 GAACGTTGGATGAAATAATGAAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAAA 1050 Query 1261 TATAAACCTGAGATTGAAAAACAGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCA 1320 ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1051 TATAAACCTGAGAATGAAAAACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCG 1110 Query 1321 GATGTGGATATTAGATGTTATGAAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACC 1380 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1111 GATGTGGATATTAGATCTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACC 1170 Query 1381 GATTTCGAAGAAGAGATAATGGAAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTG 1440 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1171 GATTTCGAAGAAGAGATAATGGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTG 1230 Query 1441 GATGATATATTGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGGCG-GCAATATAATAA 1499 ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct 1231 GATGAAATAACGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGGCGTG-AATATAA-A- 1287 Query 1500 ACCTGAGATTGAAATACAGGTCAATGAAAAGGAAGAGAAGAAAGTAATCAATACGGATAT 1559 ||||||| ||||| |||||| ||||| ||| ||||||||||||||| || ||||| | Sbjct 1288 -CCTGAGAATGAAAAACAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGT 1346 Query 1560 GGATATTAGATATGATGATGAGTCACCAGA-AGAGGTGGAGACATATTCTAGTCTCACGG 1618 |||||| |||| | |||| ||||||||| | | ||||| | | | ||| ||| ||||| | Sbjct 1347 GGATATGAGATCTTATGAAGAGTCACCACACA-AGGTGTATA-A-ATT-TAGCCTCACCG 1402 Query 1619 ATGAT-GAAGAAGAGAGAA-GCAAGGAAGAT-ACATCAATGGAAGATGTGAA 1667 || | |||||||||| || | ||| | ||| ||||| | |||||||||| Sbjct 1403 ATT-TCGAAGAAGAGATAATGGAAG-ATGATTACATC---G-AAGATGTGAA 1448 Score = 784 bits (424), Expect = 0.0 Identities = 629/724 (87%), Gaps = 30/724 (4%) Strand=Plus/Plus Query 699 AATGAAAGATGATTACATAGAACATAAGAAGTCTACTAGATTGTTGGCTGAAAAT-GCGA 757 |||| ||||||||||| ||||| || |||| | |||| ||||| || |||| || Sbjct 957 AATGGAAGATGATTACGTAGAAGATGTGAAG--T-GTAGAACGTTGGATG-AAATAATGA 1012 Query 758 AGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGG-AATCTAAACCTGAGACTGAAAAA 816 |||| ||||||||| |||||||||||| || | ||| ||| ||||||||||| ||||||| Sbjct 1013 AGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAAATATAAACCTGAGAATGAAAAA 1071 Query 817 GAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGATATTAGTTGTTAT 876 |||| |||||||||||||||||| |||||| |||||||||||||||||||| | |||| Sbjct 1072 CAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTAGATCTTAT 1131 Query 877 GAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 GAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1191 Query 937 GAAGATGATTACAGAGAAGATATGAAGTGTAGAATGTTGGATGATATAGTGAAGAATTCC 996 ||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||| ||| Sbjct 1192 GAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTGGATGAAATAACGAAGAAGTCC 1251 Query 997 GGTCACCGTGTAGAAATATCAAGGCCG-GAATATTATAAACCTGAGATTGAAAAACAGGT 1055 ||||||||| ||||||||||||||| | |||||| | || ||||||| |||||||||||| Sbjct 1252 GGTCACCGTTTAGAAATATCAAGGC-GTGAATAT-A-AA-CCTGAGAATGAAAAACAGGT 1307 Query 1056 ATATGAAAAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTAGATCTTATGAAGA 1115 |||||| ||| ||||||||||||||| ||||||||| | |||| |||||||||||||| Sbjct 1308 TTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGAGATCTTATGAAGA 1367 Query 1116 GTCACCAAACGAGGTGTATAAATTTAGCCTCACTGATTTGGAAGAAGAGATAATGGAAAA 1175 ||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||| | Sbjct 1368 GTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATGGAAGA 1427 Query 1176 TGACTCCATAGAAGGTGTGAAGTGTAGAATGTTGGATGAAATAATGAAGAAGTCCGGTCA 1235 ||| | ||| |||| ||||||||||||| ||||||||||||||||||| | |||||||| Sbjct 1428 TGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGAA-A--TCCGGTCA 1484 Query 1236 CCATTTAAAAATATCAAGGCCGG-AATATAAACCTGAGATTGAAAAACAGGT-ATATGAA 1293 || |||| |||||||||| |||| |||||||||||||||||||||||||||| | ||||| Sbjct 1485 CCGTTTAGAAATATCAAG-CCGGGAATATAAACCTGAGATTGAAAAACAGGTCA-ATGAA 1542 Query 1294 GAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTATGAAGAGTCACCA 1353 || ||||||||||||||||| || | || | ||||||||||| ||| |||||||| Sbjct 1543 GAAAAAGAGAAGAAAGTAATGAAT--A--TG-G-ATATTAGATGTGCTGATCAGTCACCA 1596 Query 1354 CACGAGGTGTCTAAATTTAGCCTCACCGAT-TTCGAAGAAGAGATAATGGAAG-ATGATT 1411 ||||||||| |||| |||||||||||||| || |||||||||| || | ||| | ||| Sbjct 1597 TACGAGGTGTATAAAATTAGCCTCACCGATGTT-GAAGAAGAGAGAA-GCAAGGAAGAT- 1653 Query 1412 ACAT 1415 |||| Sbjct 1654 ACAT 1657 Score = 699 bits (378), Expect = 0.0 Identities = 562/645 (87%), Gaps = 35/645 (5%) Strand=Plus/Plus Query 1676 ACGAGGTGTACAAATTTAGCCTCACCGATATCAAAGAAGAGAGAAGCAATGAAGATACAT 1735 |||||||||| ||| |||||||||||||| | |||||||||||||||| |||||||||| Sbjct 1598 ACGAGGTGTATAAAATTAGCCTCACCGATGTTGAAGAAGAGAGAAGCAAGGAAGATACAT 1657 Query 1736 CAATGGAAGATTG-TTGCATAGAAGA-GGCTCAAGTCGGAAAAGATCAAAGAGTCTTCAG 1793 |||||||||| || || ||||||||| || |||||| ||||||||||||||||| ||||| Sbjct 1658 CAATGGAAGA-TGATTACATAGAAGATGG-TCAAGTGGGAAAAGATCAAAGAGTATTCAG 1715 Query 1794 ATTCAGAGAAAGTAGTGAAGAGAAGAGAAAATCCTCATCATCACCATTATCACCACTAAC 1853 |||| || ||||||||||||||||||||||| | ||||||||||||||||| |||||| Sbjct 1716 ATTCCGAAAAAGTAGTGAAGAGAAGAGAAAA--C-CATCATCACCATTATCAACACTAAT 1772 Query 1854 AGAGTTTAGGGATATGGAGAGTTTGACGTATTACATGAGGCAAA-AAGGGA-TGCATCGA 1911 ||||||||| ||| ||||||||||||||||||||||||||||| || ||| | |||| | Sbjct 1773 GGAGTTTAGGAATACGGAGAGTTTGACGTATTACATGAGGCAAACAA-GGACT-CATCAA 1830 Query 1912 AGAAGAAGAAGATCATCAACATCACCACATTGTTGCCATAATGTAGTATACAATGAGTTT 1971 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 1831 AGAAGAAGAAGATCATCAACATCACCACATTGTCGCCATTGTGTAGAATACAATGAGTTC 1890 Query 1972 AAAGTGACGAAGGAAGAAGAAGA-G--GAAGAA-A-GA----CAAAGATTAACAACCAA- 2021 ||||||| ||||||||||||||| | |||||| | || ||||| |||| |||||| Sbjct 1891 AAAGTGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGACAAAGCTTAAAAACCAAG 1950 Query 2022 ACGTGTTCATTCTAAGCTTCATGAATACGAACAA-TTTTTAACTCAGTTTAAAAAGAAGA 2080 | ||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||| Sbjct 1951 AA-TGTTCATTCGAAGCTTCATGAGTACGAA-AAGTTTTTAACTCAGTTTAAAAAGAAGA 2008 Query 2081 AGGAAGAAGAAAACGAGAGACGAAGATTAT-CACCCAAAGACTTTGAGCCTACGCTTCCT 2139 |||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||| Sbjct 2009 AGGAAGCAGAAAACGAGAGACGAAGATTATTC-CCCAAAGGCTTTGAGCCTACGCTTCCT 2067 Query 2140 GATTACGACCAAGTGATTACTCGCTTTAGAGTGCTGGAGA-AGGAAGAAGAAGAAAGACG 2198 ||||||||| |||| |||||||| ||||||| ||||||| | ||||||||||||||| Sbjct 2068 GATTACGACGAAGTTATTACTCGGTTTAGAGCGCTGGAGGCAC-AAGAAGAAGAAAGAC- 2125 Query 2199 AA-GATTAGCA--A-CAAAACATGTTCATCCTAAGCTTCCTGATTACGACCAGATTGCTA 2254 || |||||||| | |||||||| |||||||||| ||||||||||||||||| |||| || Sbjct 2126 AACGATTAGCAGCAACAAAACATATTCATCCTAACCTTCCTGATTACGACCAAATTGTTA 2185 Query 2255 CTAAGTTTAAA-CTCCTGAAGGAGGTAGAAAAAGAAAGACGAAGA 2298 || |||||||| | | | ||||| | ||||||| || ||| |||| Sbjct 2186 CTCAGTTTAAAGCGC-TAAAGGAAGAAGAAAAACAAGGACAAAGA 2229 Score = 582 bits (315), Expect = 3e-165 Identities = 536/640 (84%), Gaps = 26/640 (4%) Strand=Plus/Plus Query 1 ATGTTTGGTTTCTCGTTCTCTCGACGG-AGAAAATCAAACGCTTTCACATGGAAAGTTTT 59 ||||||||||||| | ||| ||||||| || ||| |||| ||||||||||||||||| || Sbjct 1 ATGTTTGGTTTCTTGCTCTGTCGACGGAAG-AAAGCAAAAGCTTTCACATGGAAAGTGTT 59 Query 60 GAAACA-GCTTCAATCTCGCCTTATGCTACTCAAGTC-CCAGAAGTACGCAAAATCTAGA 117 | || | |||||||||||| ||| |||||||||| | ||| ||||| |||||| ||||| Sbjct 60 G-AAGATGCTTCAATCTCGTCTTCTGCTACTCAA-ACACCAAAAGTATGCAAAAGCTAGA 117 Query 118 CACCTACGTGCT-GATATTGTTGACTTCATCCGAAGCAACGACTCCAAGAGTGCACTCTT 176 || ||||| | ||||||| ||||| |||||||||||| || |||| | ||||||| | Sbjct 118 CATATACGT-ATGGATATTGCTGACTACATCCGAAGCAATGAATCCACCAATGCACTCCT 176 Query 177 CCGAACCGAACAGCTCTTGCTCGTCGAAAACGCGATTACAATCTACGGTTTTTTGCTCAA 236 |||||||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||| || Sbjct 177 CCGAACCGAACAGCTCTTCCTCGTCGAAAACTCGATTTCAATCTACGATTTGTTGCTTAA 236 Query 237 GTTCACTGATTTCATCCTCCTCCGCTTCTCCCCCAGTAAAAAACACAGTTGTTTATTGGT 296 |||||| |||||||| ||| ||||||||||| | | ||||||| | | | |||| Sbjct 237 GTTCACAGATTTCATAATCCGACGCTTCTCCCCAATTCGAAAACAC-G--GAGAACTGGT 293 Query 297 TAATGATGATACTTCCGAAGCAGTTTCGAGTCTGATTTTTGCATCGGTCAAGTGTAGAGA 356 |||||| |||||||| ||||||||||||| ||| || | ||||||||| ||||||| ||| Sbjct 294 TAATGACGATACTTCGGAAGCAGTTTCGACTCTTATCTATGCATCGGTGAAGTGTAAAGA 353 Query 357 AATACCTGAACTGC-TAATTATTAGCGAGCTGGTTGGTCAACGTTATGGTCAACGTTATG 415 ||||||||| ||| || || | ||||||||||||||||||||||||||||||||||||| Sbjct 354 TATACCTGAAATGCTTACTT-TAAGCGAGCTGGTTGGTCAACGTTATGGTCAACGTTATG 412 Query 416 TAACAACTGCTATTCAGGTCCCTCCC-GGGAATCTTGTAAACACTGAGATCAAAGAGAAA 474 ||||||||||||||||||| | |||| ||||||||||||||||| ||||||||| ||||| Sbjct 413 TAACAACTGCTATTCAGGTTC-TCCCTGGGAATCTTGTAAACACGGAGATCAAAAAGAAA 471 Query 475 TTGAAG-TCA-ACTTCAGTAGTATCCGAA-ACTGAT-AAGTGTAGAGTAATGGAGGAGAT 530 ||| | | | | ||||||| | ||||| | || | |||||| || | ||||||| || Sbjct 472 TTGTCGAT-ATA-TTCAGTA-T--CCGAACA-TG-TGAAGTGTCGAATGGTGGAGGAAAT 524 Query 531 AGCCAAGGAGTCGGGTTACCGTTTAGAAATTCTAGGGCTGGGATATAAATCTGAGATTGA 590 ||||||||| |||||||||||||||||||| ||| |||||| | |||||||||||| ||| Sbjct 525 AGCCAAGGAATCGGGTTACCGTTTAGAAATACTAAGGCTGGAACATAAATCTGAGAATGA 584 Query 591 CAACGAGGTTTTTGACTTGGAAGAAAAGAACGTAATGGAT 630 ||| |||| |||||| || |||| ||||| ||||||||| Sbjct 585 AAACAAGGTATTTGACGTGAAAGAGAAGAAAGTAATGGAT 624 Score = 549 bits (297), Expect = 3e-155 Identities = 607/748 (81%), Gaps = 55/748 (7%) Strand=Plus/Plus Query 952 GAAGATATGAAGTGTAGAATGTTGGATGATATAGTGAA-GAATTCCGGTCACCGTGTAGA 1010 ||| || |||||||| ||||| |||| || |||| || ||| || ||| ||||| |||| Sbjct 493 GAACATGTGAAGTGTCGAATGGTGGAGGAAATAGCCAAGGAA-TCGGGTTACCGTTTAGA 551 Query 1011 AATATC-AAGGCCGGAATATTATAAACCTGAGATTGAAAAAC-AGGTATATGAAAAGGAA 1068 |||| | ||||| || | | ||||| |||||| || ||||| |||||| ||| | || Sbjct 552 AATA-CTAAGGCTGG-A-A-CATAAATCTGAGAATG-AAAACAAGGTATTTGACGTGAAA 606 Query 1069 GAGAAGAAAGTAATGGATCCGGAT-ATCTATATTAG-ATCTTATG-AAGAGTCACCAAAC 1125 |||||||||||||||||| |||| | | | || | | | | ||||||||||| | Sbjct 607 GAGAAGAAAGTAATGGATTTGGATAAAGAAGA-GAGAAGC--AAGAAAGAGTCACCACAG 663 Query 1126 GAGGTGTATAAATTTAGCCTCACTGAT-T----------TG--G-AAG-AAGAG--AT-A 1167 |||||||||||||||| |||||| ||| | | | ||| ||||| || | Sbjct 664 GAGGTGTATAAATTTATCCTCACCGATGTCAAAGACGAGAGAAGCAAGAAAGAGACATCA 723 Query 1168 ATGGAAA-ATGACTCCATAGAAG--GTG-TGAAGTGTAGAATGTTGGATGAAATAA-TGA 1222 || |||| |||| | |||||||| ||| |||||| |||| |||||| ||||| || || Sbjct 724 AT-GAAAGATGATTACATAGAAGATGTGATGAAGTCTAGATTGTTGGCTGAAA-AAGCGA 781 Query 1223 AGAAGTCCGGTCACCATTTAAAAATATCAAGGCCGGAATATAAACCTGAGATTGAAAAAC 1282 ||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||| | Sbjct 782 AGAAGTCAGGTCACCGTTTAGAAATATTAAGGCCGGAATATAAACCTGAGATTGAAAATC 841 Query 1283 AGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTATG 1342 |||| |||||||||||||||||||||||||| ||||| ||| ||||||||| || ||||| Sbjct 842 AGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATATGGATATTACATCTTATG 901 Query 1343 AAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATGG 1402 ||||| ||||||||||||||| |||||||||| ||||| |||||||||||| |||||||| Sbjct 902 AAGAGCCACCACACGAGGTGTATAAATTTAGCATCACCAATTTCGAAGAAGGGATAATGG 961 Query 1403 AAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTGGATGATATATTGAAGAAGTCCG 1462 ||||||||||| |||||| | |||||||||||| ||||||||| ||| ||||||| |||| Sbjct 962 AAGATGATTACGTAGAAGATGTGAAGTGTAGAACGTTGGATGAAATAATGAAGAAATCCG 1021 Query 1463 GTCACCGTTTAGAAATATCAAGGCGGCAATATAATAAACCTGAGATTGAAATACAGGTCA 1522 ||||||||||||||||||||| |||| || ||| ||||||||||| ||||| |||||| Sbjct 1022 GTCACCGTTTAGAAATATCAAAGCGG-AA-ATA-TAAACCTGAGAATGAAAAACAGGTTT 1078 Query 1523 ATGAAAAGGAAGAGAAGAAAGTAATCAATACGGATATGGATATTAGATATGATGATGAGT 1582 ||||| ||||||||||||||||||| || ||||| |||||||||||| | |||| |||| Sbjct 1079 ATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTAGATCTTATGAAGAGT 1138 Query 1583 CACCAGAAGAGGTGGAGACATATTCTAGTCTCACGGATGAT-GAAGAAGAGAGAA-GCAA 1640 ||||| | |||||| | | | ||| ||| ||||| ||| | |||||||||| || | || Sbjct 1139 CACCACACGAGGTGTATA-A-ATT-TAGCCTCACCGATT-TCGAAGAAGAGATAATGGAA 1194 Query 1641 GGAAGAT-ACATCAATGGAAGATGTGAA 1667 | | ||| |||| | | |||||||||| Sbjct 1195 G-ATGATTACAT-A--G-AAGATGTGAA 1217 Score = 496 bits (268), Expect = 4e-139 Identities = 456/540 (84%), Gaps = 40/540 (7%) Strand=Plus/Plus Query 631 GAGTCACTACACGAGGTGTATAAATTTTGCCTCACCGATGTTGATGAGAGAAGCAAGAAA 690 ||||||| ||||||||||||||||||| |||||||||| || | | ||| || Sbjct 1135 GAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGA--TT--T------CG-AAG-AA 1182 Query 691 GAGACATCAATGAAAGATGATTACATAGAACATAAGAAGTCTACTAGATTGTTGGCTGAA 750 ||| || |||| ||||||||||||||||| || |||| | |||| |||||| || | Sbjct 1183 GAG--AT-AATGGAAGATGATTACATAGAAGATGTGAAG--T-GTAGAATGTTGGATG-A 1235 Query 751 AAT-GCGAAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCG-GAATCTAAACCTGAGA 808 ||| ||||||||||||||||| |||||||||||| |||| || |||| ||||||||||| Sbjct 1236 AATAACGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGG-CGTGAATATAAACCTGAGA 1294 Query 809 CTGAAAAAGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGATATTA 868 ||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||| | Sbjct 1295 ATGAAAAACAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGA 1354 Query 869 GTTGTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 928 | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1355 GATCTTATGAAGAGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 1414 Query 929 AGATAATGGAAGATGATTACAGAGAAGATATGAAGTGTAGAATGTTGGATGATATAGTGA 988 ||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||| ||| Sbjct 1415 AGATAATGGAAGATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGA 1474 Query 989 AGAATTCCGGTCACCGTGTAGAAATATCAAGGCCGGAATATTATAAACCTGAGATTGAAA 1048 | | | ||||||||||| ||||||||||||| |||| | || |||||||||||||||||| Sbjct 1475 A-A-T-CCGGTCACCGTTTAGAAATATCAAG-CCGGGA-AT-ATAAACCTGAGATTGAAA 1528 Query 1049 AACAGGT-ATATGAA-AAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTAGATC 1106 ||||||| | ||||| || ||||||||||||||||| | |||| ||||||||| Sbjct 1529 AACAGGTCA-ATGAAGAAA-AAGAGAAGAAAGTAATG-A-----ATATGGATATTAGATG 1580 Query 1107 TTATGAAGAGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGAT-TTGGAAGAAGAGA 1165 | ||| |||||||| |||||||||||||| |||||||||| ||| ||| ||||||||| Sbjct 1581 TGCTGATCAGTCACCATACGAGGTGTATAAAATTAGCCTCACCGATGTTG-AAGAAGAGA 1639 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87569473255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5