BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51913.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474312 jgi|Araly1|474312|fgenesh2_kg.1__4266__AT1G51913.1         483    5e-136


> Ahg474312 jgi|Araly1|474312|fgenesh2_kg.1__4266__AT1G51913.1
Length=316

 Score =  483 bits (261),  Expect = 5e-136
 Identities = 299/317 (94%), Gaps = 3/317 (1%)
 Strand=Plus/Plus

Query  10   CAAAAAGTTGTTATGGCAAACGAGCGATCAAGCTCAATCCTCTTCCTTTCTGTTCTTGTA  69
            ||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct  1    CAAAAAGTTGTTATGGCAAACGAGCGATCAAGCTCAACCCTCCTCCTTTGTGTTCTTGTA  60

Query  70   CTTGT-TTTGGTCTTCTCTCCTACACTTCAATGTCAAGCAGCTCGAGTGCATCTCGATGT  128
            ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   CTT-TCTTTGGTCTTCTCTCCTACACTTCCATGTCAAGCAGCTCGAGTGCATCTCGATGT  119

Query  129  TGAAGGGCATATGCTGCTGAGAGCACCAGTGCCAATTCGGTTTTGCCCTGCTTGTGCGTG  188
            |||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||| |||
Sbjct  120  TGAAGGGCGTATGCTGCTAAGAGCACCAGTGCCAATTCGCTTTTGCCCGGCTTGTGTGTG  179

Query  189  TTGTGCACCGGCTCCAAAAGGTTCTTGCTGCCCATGCCGATGCACCAACAATCCCCAAAG  248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  180  TTGTGCACCGGCTCCAAAAGGTTCTTGCTGCCCATGCCGATGCACCAACAATCCCTAAAA  239

Query  249  -GATGTGACTTTGCTTTCTGCTAGCATGTATGTGTTTGATATGTGAATGTGTATGTGCAA  307
             ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  240  AGATGTGACTCTGCTTTCTGCTAGCATGTATGTGTTTGATATATGTATGTGTATGTGCAA  299

Query  308  AATGGTCAAAATTTAAT  324
            ||||||||||||| |||
Sbjct  300  AATGGTCAAAATTGAAT  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5