BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51915.1

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474313 jgi|Araly1|474313|fgenesh2_kg.1__4267__AT1G51915.1         510    3e-144


> Ahg474313 jgi|Araly1|474313|fgenesh2_kg.1__4267__AT1G51915.1
Length=340

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 319/340 (94%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  65   ATCTGAAATCTTATTAAGTTTCTAAGCA-TTT-ATCAGAAAGCTGCAATGGCCACCGAGC  122
            ||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||| |
Sbjct  1    ATCTGAACTCTTATTAAGTTTCTAAGCATTTTCATCACAAAGCTGCAATGGCCACCGACC  60

Query  123  GATTCTCAACCATGCTCATTTCCGTTCTCGTACTTGCTTTGGTCTTATCTCCAATCCTTC  182
            ||||||||| ||| ||||| |||||||| ||||||||||||||| ||| |||| ||||||
Sbjct  61   GATTCTCAATCATCCTCATATCCGTTCTTGTACTTGCTTTGGTCCTATTTCCACTCCTTC  120

Query  183  CATGTCAAGCAACTCGAGCGCATCTAGATGCTGAAACGCGTATGCTGAGGCGCGTGTGTC  242
            |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  CATGTCAAGCAACTCGTGCGCATCTAGATGCTGAAAAGCGTATGCTGAGGCGCGTGTGTC  180

Query  243  CTTCGTGTGTGTGTTGTGCACCGGCTCCACGAGGTGCTTGCTGCCCATGTCGATGCCCCA  302
            ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  181  CTTTGTGTGTGTGTTGTGCACCGGCTCCACGAGGTGGTTGCTGCCCATGTCGCTGCCCCA  240

Query  303  AAAATCCCTAAAAGCTTCGACTTTGATTTCGTCTAACACCTTGTCATGTGTTTAATATGA  362
            |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct  241  AAAATCCCTAAACGCTTCGACTTTGCTTTCGTCTAACAGCTTGTCATGTGTTTAATATAA  300

Query  363  TCTTATTTACATGTGAATAAGCAATCAAAAGATTAGACTC  402
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCTTATTTACATGTGAATAAGCAATCAAAAGATTAGACTC  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14995146477


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5