BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51920.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914352 jgi|Araly1|914352|Al_scaffold_0001_4606                    313    4e-85


> Ahg914352 jgi|Araly1|914352|Al_scaffold_0001_4606
Length=222

 Score =  313 bits (169),  Expect = 4e-85
 Identities = 201/216 (93%), Gaps = 3/216 (1%)
 Strand=Plus/Plus

Query  8    CGTTTCACAGTGGAAAATCCATCTTCTTGAAGCTCTTTGTCTT-GTTTCTGCTACTTGTT  66
            ||||||||||||||||||||||||| |||||| |||| ||||| |  |||||||||| ||
Sbjct  5    CGTTTCACAGTGGAAAATCCATCTTTTTGAAGATCTTCGTCTTCG-CTCTGCTACTTCTT  63

Query  67   CTTCCCTTGTCTCAAAGCAACGCTACTCGTATCCCAAGAGCTCCTATTAGCTCGAGAAGA  126
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  64   CTTCCCTTGTCACAAAGCAACGCTACTCGTATCCCAAGAGCTCCAATTAGCTCGAGAAGA  123

Query  127  CCGATTTGCCCTGCTTGTGTGTGTTGTGAGCCAGCTCCGCTAGGAAGTTGCTGCAGATGT  186
            || |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  124  CCAATTTGCCCGGCTTGTGTGTGTTGTGAGCCAGCTCCACCAGGAAGTTGCTGCAGATGT  183

Query  187  TGTGCATCTCCTATTGTCACTCAAACTCA-TCACCA  221
            ||||||||||||||||||||||||||||| || |||
Sbjct  184  TGTGCATCTCCTATTGTCACTCAAACTCAATCTCCA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5