BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51930.1

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923695 jgi|Araly1|923695|scaffold_104976.1                        497    2e-140


> Ahg923695 jgi|Araly1|923695|scaffold_104976.1
Length=422

 Score =  497 bits (269),  Expect = 2e-140
 Identities = 351/389 (90%), Gaps = 11/389 (3%)
 Strand=Plus/Plus

Query  1    ATGGATACTATTGACGAAATTCTCATTGGTTTCTCCATCATCGGCTTGATCGTCATCGTG  60
            |||||||||| ||| |||||| |||||||||| | |||||||  ||||||||||| ||| 
Sbjct  22   ATGGATACTACTGATGAAATTATCATTGGTTTGTTCATCATCTCCTTGATCGTCACCGTA  81

Query  61   ATTGCTAACTGTTGCGACAATA-TAGATCCCCCTCCCACGAGATTACCTCCCGAGACAAT  119
            |||||| |||||||||| ||||  || || |||||||||| |||||||||||||||||||
Sbjct  82   ATTGCTCACTGTTGCGAAAATACAAG-TCTCCCTCCCACGGGATTACCTCCCGAGACAAT  140

Query  120  CCATCAAACTGTACAGCCTCAACAAGACATTGAAACCGGACAGAGCAAAGCCCTAGTGTT  179
            ||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct  141  CCACCAAACTGTAAAGCCTCAACAAGACATTGAAACCGGACAGAGGAAAACCCTAGTTTT  200

Query  180  CAAAGATATCAaagaagaagaaggaggaagagaagaagaagGTGGTGGTAAACGTTTTTG  239
            |||||||||||||||||  | |||| | | ||||||||  ||  ||||||||||||||||
Sbjct  201  CAAAGATATCAAAGAAG--G-AGGA-G-A-AGAAGAAG--GG-AGTGGTAAACGTTTTTG  251

Query  240  TCCAATTTGTTTGGAAGAGTACGAGGATGATCATCAGATTAGGCGTTTAAGAAACTGTGG  299
            ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct  252  TCCAATTTGTTTGGAAGAGTACGAGGATGATCATCAGATTAGGCGATTAAAAAAGTGTGG  311

Query  300  ACATGTTTTTCATCTTTTGTGTATTGATTCTTGGCTTACACAGAAACAAAACTGTCCAAG  359
            ||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||
Sbjct  312  ACATGTTTTTCATCTTTTGTGTATTGATTCTTGGCTTACACGGGAACGAAGCTGTCCAAG  371

Query  360  TTGTCGCCGTTCTGTTGATTTGATGAGTT  388
            |||||||||||||||||||||||||||||
Sbjct  372  TTGTCGCCGTTCTGTTGATTTGATGAGTT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14308345875


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5