BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51940.1
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474314 jgi|Araly1|474314|fgenesh2_kg.1__4268__AT1G51940.1 3048 0.0
> Ahg474314 jgi|Araly1|474314|fgenesh2_kg.1__4268__AT1G51940.1
Length=2186
Score = 3048 bits (1650), Expect = 0.0
Identities = 1889/1999 (94%), Gaps = 37/1999 (2%)
Strand=Plus/Plus
Query 155 TTTCTCAATTTCTACTTCACACAATGAATCTTACCTTCTACATCTTCTTCTTAAGTCTTT 214
|||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 91 TTTCCCAATTTCTACTTCACACAATGAATCTCACCTTCTTCATCTTCTTCTT---TC--- 144
Query 215 TACCAAGTTTCTCATCTTCAAAGCCAATGAATTGCTCTGACACTACTCGTCTCTGCAGTT 274
| | | || | ||||||||||||||||||||||||||| | |||||||| | ||
Sbjct 145 T--C-A-----TC--C-TCAAAGCCAATGAATTGCTCTGACACTTCCCGTCTCTGTACTT 193
Query 275 CCTTCCTTGCTTTCAAACCAAACCAAAACCAATCTTTCTCTGTAATCCAAAGCATGTTCG 334
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 194 CCTTCCTCGCTTTCAAACCAAACCAAAACCAATCTTTCTCCGTAATCCAAAGCATGTTCG 253
Query 335 ATGTATTACCA-CAAGACATAACCGCCGACATCTCCGGAGGTTACTTCTTTATTAAAAAG 393
|||| |||||| | ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 254 ATGTTTTACCAGC-AGACATAACCGCCGACATCTCCGGAGGTTACATCTACATTAAAAAG 312
Query 394 AACTGTTCTTGTCTTACTACGACTCATCAATACACAACAAACACAACATTCACAATCAGA 453
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 313 AACTGTTCTTGTCTTACCACAACTCATCAATACACAACAAACACAACATTCACAATCAGA 372
Query 454 CAAAACGTTGGATACGTTTACAATGTTACCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 513
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 373 CAAAACGTTGGATACGTTTACAATGTTGTCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 432
Query 514 CCGAATACAACTAGAGCAGCTCGCGCTGGTGCAGTGGTTTCTGTTCAGCTTCTTTGTGGT 573
|||||||| | ||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct 433 CCGAATACGAGAAGAGCAGCTCGTGCTGGTTCGGTTGTTTCTGTTCAGCTTCTTTGTGGT 492
Query 574 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCTATGGCTGGAGATAGTGTA 633
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 493 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCCGTGGCTGGAGATAGTGTA 552
Query 634 CAATCTCTCTCGAGCAGATTTGGTGTTAGTATGGATCGAATTGAGGATGTTAATGGGATC 693
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 553 CAATCTCTCTCGAGTAGATTTGGTGTTAGTATGGATCGAATTGAAGAAGTTAATGGGATC 612
Query 694 TTGAATCTTGATAATATCACAGCTGGTGATCTCCTT-TATA-TCCCACTTGATTCCGTAC 751
|||||||||||||||||||||||||||||| | ||| || | |||| |||||||||||||
Sbjct 613 TTGAATCTTGATAATATCACAGCTGGTGATGT-CTTATACATTCCC-CTTGATTCCGTAC 670
Query 752 CTGGAGAGCCTTATGAGACAAGTAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 811
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 671 CTGGAGAGGCTTACGAGACAAGGAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 730
Query 812 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 790
Query 872 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCACTTCTTGTTC 931
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 791 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCGCTTCTTGTTT 850
Query 932 TGTGCATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 991
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGTGTATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 910
Query 992 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 970
Query 1052 ATAACTGCTGTAGATCAGGGGATTTTAGACAAACCAATGGTG------A-A---A-C-TC 1099
|||||||||| ||||||||||||||||||||||||||||||| | | | | ||
Sbjct 971 ATAACTGCTGCAGATCAGGGGATTTTAGACAAACCAATGGTGAAAATCAGAGTCATCATC 1030
Query 1100 AAGTTGTTGCTATTCCTAAAGCTCTTGGTGATGGAATGTTTGAGATAGAGAAGCCTATGG 1159
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1031 AAGTTGCTGCTATTCCTAAAGCTCTTGGTGACGGAATGTTTGAGATAGAGAAGCCTATGG 1090
Query 1160 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1150
Query 1220 GTCATGGAAACTATGGTTCTGTATACTTTGGTCTACTTAGAGAACAGGAAGTTGCTGTCA 1279
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1151 GTCATGGAAATTATGGTTCTGTATACTTTGGTTTACTTAGAGAACAGGAAGTTGCTGTCA 1210
Query 1280 AAAGGATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1339
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AAAGAATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1270
Query 1340 TTCATCATTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1399
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TTCATCACTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1330
Query 1400 TAGTTTATGAATATGTCCGAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1459
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TAGTGTATGAATATGTCCAAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1390
Query 1460 AAGGAAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGACGCAGCAAGAG 1519
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1391 AAGGCAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGATGCAGCAAGAG 1450
Query 1520 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAGACAA 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1451 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAAACAA 1510
Query 1580 GCAATATTTTGCTCGACGAGGCATTCAG-GGCTAAGATATCGGATTTTGGACTTGCAAAA 1638
|||| |||||||| ||||||||||| || || |||||||| ||||||||||||||||||
Sbjct 1511 GCAACATTTTGCTTGACGAGGCATTTAGAGGA-AAGATATCCGATTTTGGACTTGCAAAA 1569
Query 1639 CTCGTTGAGAAAACTGGAGAGGGAGAAATATCAGTAACTAAAGTAGTTGGTACATATGGT 1698
|| |||||||||||||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 1570 CTGGTTGAGAAAACTGGAGAGGGAGAAATTTCTGTTACTAAAGTTGTTGGTACATATGGT 1629
Query 1699 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATATTTACGCC 1758
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1630 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATGTTTATGCC 1689
Query 1759 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACGGAGGCG 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1690 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACTGAGGCG 1749
Query 1819 ATTGGAACTAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGTGCTAAAG 1878
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1750 ATGGGAACCAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGCGCTAAAG 1809
Query 1879 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1869
Query 1939 GATTTATACCCGCATGACTGTTTGTTCAAGATTGCTACGTTGGCAAAGCAATGTGTGGAT 1998
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1870 GATTTATACCCGCACGACTGTTTGTTCAAGATTGCTATGTTGGCAAAGCAATGCGTTGAT 1929
Query 1999 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 2058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 1989
Query 2059 CTGTCTTCCATTGAATGGGAAGCCACTCTTGCTGGAAACAGCCAAGTCTTTAGTGGTCTA 2118
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1990 CTGTCTTCCATTGAATGGGAAGCAACACTTGCTGGAAACAGCCAAGTCTTTAGTGGACTT 2049
Query 2119 GTCCAAGGAAGATAAAAAC 2137
|||||||||||||||||||
Sbjct 2050 GTCCAAGGAAGATAAAAAC 2068
Score = 152 bits (82), Expect = 1e-35
Identities = 108/120 (90%), Gaps = 4/120 (3%)
Strand=Plus/Plus
Query 2184 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAAACCAAAAGATCGTTCGCAGTCTAACTAAG 2243
|||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||||
Sbjct 2068 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAGA-GATATGATCGATCGCAGTCTAACTAAG 2126
Query 2244 TAGATAGTTACAGAGACAAATCTCTATATGAT--T-ATTCTTTTGGAGAATCAAATGAAG 2300
||| ||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||
Sbjct 2127 TAGTTAGTTACAGAGACTAATCTCTATATGATGATTATTCTTTTGGAGATTCAAATGAAG 2186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87417112275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5