BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51940.1 Length=2321 Score E Sequences producing significant alignments: (Bits) Value Ahg474314 jgi|Araly1|474314|fgenesh2_kg.1__4268__AT1G51940.1 3048 0.0 > Ahg474314 jgi|Araly1|474314|fgenesh2_kg.1__4268__AT1G51940.1 Length=2186 Score = 3048 bits (1650), Expect = 0.0 Identities = 1889/1999 (94%), Gaps = 37/1999 (2%) Strand=Plus/Plus Query 155 TTTCTCAATTTCTACTTCACACAATGAATCTTACCTTCTACATCTTCTTCTTAAGTCTTT 214 |||| |||||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct 91 TTTCCCAATTTCTACTTCACACAATGAATCTCACCTTCTTCATCTTCTTCTT---TC--- 144 Query 215 TACCAAGTTTCTCATCTTCAAAGCCAATGAATTGCTCTGACACTACTCGTCTCTGCAGTT 274 | | | || | ||||||||||||||||||||||||||| | |||||||| | || Sbjct 145 T--C-A-----TC--C-TCAAAGCCAATGAATTGCTCTGACACTTCCCGTCTCTGTACTT 193 Query 275 CCTTCCTTGCTTTCAAACCAAACCAAAACCAATCTTTCTCTGTAATCCAAAGCATGTTCG 334 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 194 CCTTCCTCGCTTTCAAACCAAACCAAAACCAATCTTTCTCCGTAATCCAAAGCATGTTCG 253 Query 335 ATGTATTACCA-CAAGACATAACCGCCGACATCTCCGGAGGTTACTTCTTTATTAAAAAG 393 |||| |||||| | ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 254 ATGTTTTACCAGC-AGACATAACCGCCGACATCTCCGGAGGTTACATCTACATTAAAAAG 312 Query 394 AACTGTTCTTGTCTTACTACGACTCATCAATACACAACAAACACAACATTCACAATCAGA 453 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 313 AACTGTTCTTGTCTTACCACAACTCATCAATACACAACAAACACAACATTCACAATCAGA 372 Query 454 CAAAACGTTGGATACGTTTACAATGTTACCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 513 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 373 CAAAACGTTGGATACGTTTACAATGTTGTCGTCTCTGCTTACTCTGGTCTCGCGTTTCCA 432 Query 514 CCGAATACAACTAGAGCAGCTCGCGCTGGTGCAGTGGTTTCTGTTCAGCTTCTTTGTGGT 573 |||||||| | ||||||||||| |||||| | || |||||||||||||||||||||||| Sbjct 433 CCGAATACGAGAAGAGCAGCTCGTGCTGGTTCGGTTGTTTCTGTTCAGCTTCTTTGTGGT 492 Query 574 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCTATGGCTGGAGATAGTGTA 633 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 493 TGCTCTAGTGGTCTCTGGAACTATCTTATGAGCTACGTTGCCGTGGCTGGAGATAGTGTA 552 Query 634 CAATCTCTCTCGAGCAGATTTGGTGTTAGTATGGATCGAATTGAGGATGTTAATGGGATC 693 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 553 CAATCTCTCTCGAGTAGATTTGGTGTTAGTATGGATCGAATTGAAGAAGTTAATGGGATC 612 Query 694 TTGAATCTTGATAATATCACAGCTGGTGATCTCCTT-TATA-TCCCACTTGATTCCGTAC 751 |||||||||||||||||||||||||||||| | ||| || | |||| ||||||||||||| Sbjct 613 TTGAATCTTGATAATATCACAGCTGGTGATGT-CTTATACATTCCC-CTTGATTCCGTAC 670 Query 752 CTGGAGAGCCTTATGAGACAAGTAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 811 |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 671 CTGGAGAGGCTTACGAGACAAGGAAGATAAATCCACCAGCTCCTTCTCCTGCGCCTGCAT 730 Query 812 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 CATCATTAGCTAATGGCAATATCTCAGATGACCAGGTGAATCACACTGCAAAGAGTGGTA 790 Query 872 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCACTTCTTGTTC 931 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 791 GTCATGTGCCTTATATATGGATTGTTGGTGGTCTTGGAGTTGTGCTTGCGCTTCTTGTTT 850 Query 932 TGTGCATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 991 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 TGTGTATACTTGTATGTATCTGTTTGAGATCATCTAGTTGCAGTTCCAGTGAGGAAGATG 910 Query 992 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 911 GTAATGGACACAACTTCCAAATCCTTAGAAAATCCGGTTTCTTTTGCGGTTCTGGTCGGT 970 Query 1052 ATAACTGCTGTAGATCAGGGGATTTTAGACAAACCAATGGTG------A-A---A-C-TC 1099 |||||||||| ||||||||||||||||||||||||||||||| | | | | || Sbjct 971 ATAACTGCTGCAGATCAGGGGATTTTAGACAAACCAATGGTGAAAATCAGAGTCATCATC 1030 Query 1100 AAGTTGTTGCTATTCCTAAAGCTCTTGGTGATGGAATGTTTGAGATAGAGAAGCCTATGG 1159 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1031 AAGTTGCTGCTATTCCTAAAGCTCTTGGTGACGGAATGTTTGAGATAGAGAAGCCTATGG 1090 Query 1160 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1091 TGTTTACTTATGAAGAAATTCGTGCGGCTACGGATGAGTTTTCGGATTCTAATCTTCTTG 1150 Query 1220 GTCATGGAAACTATGGTTCTGTATACTTTGGTCTACTTAGAGAACAGGAAGTTGCTGTCA 1279 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1151 GTCATGGAAATTATGGTTCTGTATACTTTGGTTTACTTAGAGAACAGGAAGTTGCTGTCA 1210 Query 1280 AAAGGATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1339 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1211 AAAGAATGACTGCTACAAAAACTAAAGAGTTTGCAGCAGAGATGAAAGTGCTTTGCAAAG 1270 Query 1340 TTCATCATTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1399 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271 TTCATCACTCCAATCTGGTAGAATTGATTGGTTACGCTGCAACCGTTGACGAGCTTTTCG 1330 Query 1400 TAGTTTATGAATATGTCCGAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1459 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1331 TAGTGTATGAATATGTCCAAAAGGGAATGCTGAAAAGCCATTTGCATGATCCTCAGAGCA 1390 Query 1460 AAGGAAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGACGCAGCAAGAG 1519 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1391 AAGGCAATACCCCACTTTCTTGGATAATGAGGAATCAGATTGCACTTGATGCAGCAAGAG 1450 Query 1520 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAGACAA 1579 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1451 GCTTGGAATATATTCATGAGCATACTAAAACTCATTATGTTCACCGAGATATCAAAACAA 1510 Query 1580 GCAATATTTTGCTCGACGAGGCATTCAG-GGCTAAGATATCGGATTTTGGACTTGCAAAA 1638 |||| |||||||| ||||||||||| || || |||||||| |||||||||||||||||| Sbjct 1511 GCAACATTTTGCTTGACGAGGCATTTAGAGGA-AAGATATCCGATTTTGGACTTGCAAAA 1569 Query 1639 CTCGTTGAGAAAACTGGAGAGGGAGAAATATCAGTAACTAAAGTAGTTGGTACATATGGT 1698 || |||||||||||||||||||||||||| || || |||||||| ||||||||||||||| Sbjct 1570 CTGGTTGAGAAAACTGGAGAGGGAGAAATTTCTGTTACTAAAGTTGTTGGTACATATGGT 1629 Query 1699 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATATTTACGCC 1758 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1630 TATCTTGCACCAGAATATCTAAGCGACGGTCTTGCCACCTCGAAAAGTGATGTTTATGCC 1689 Query 1759 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACGGAGGCG 1818 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1690 TTTGGTGTTGTTCTTTTCGAAATTATATCCGGAAGAGAAGCTGTTATAAGAACTGAGGCG 1749 Query 1819 ATTGGAACTAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGTGCTAAAG 1878 || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1750 ATGGGAACCAAGAATCCAGAAAGACGTCCATTGGCATCTATTATGTTAGCAGCGCTAAAG 1809 Query 1879 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1810 AACTCACCAGACTCTATGAACATGTCGAGTTTGAAGGAGTTTGTTGACCCCAACATGATG 1869 Query 1939 GATTTATACCCGCATGACTGTTTGTTCAAGATTGCTACGTTGGCAAAGCAATGTGTGGAT 1998 |||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||| Sbjct 1870 GATTTATACCCGCACGACTGTTTGTTCAAGATTGCTATGTTGGCAAAGCAATGCGTTGAT 1929 Query 1999 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 2058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1930 GATGATCCGATTCTAAGACCAAACATGAAGCAAGTGGTTATATCGCTCTCGCAGATACTC 1989 Query 2059 CTGTCTTCCATTGAATGGGAAGCCACTCTTGCTGGAAACAGCCAAGTCTTTAGTGGTCTA 2118 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 1990 CTGTCTTCCATTGAATGGGAAGCAACACTTGCTGGAAACAGCCAAGTCTTTAGTGGACTT 2049 Query 2119 GTCCAAGGAAGATAAAAAC 2137 ||||||||||||||||||| Sbjct 2050 GTCCAAGGAAGATAAAAAC 2068 Score = 152 bits (82), Expect = 1e-35 Identities = 108/120 (90%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 2184 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAAACCAAAAGATCGTTCGCAGTCTAACTAAG 2243 |||||||||||||||||||||||||||||| | | | ||||| |||||||||||||||| Sbjct 2068 CCATTGCCTAGAAGAAGCTTAGTTTGTCTAGA-GATATGATCGATCGCAGTCTAACTAAG 2126 Query 2244 TAGATAGTTACAGAGACAAATCTCTATATGAT--T-ATTCTTTTGGAGAATCAAATGAAG 2300 ||| ||||||||||||| |||||||||||||| | ||||||||||||| |||||||||| Sbjct 2127 TAGTTAGTTACAGAGACTAATCTCTATATGATGATTATTCTTTTGGAGATTCAAATGAAG 2186 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87417112275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5