BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51950.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923698 jgi|Araly1|923698|scaffold_104979.1 1295 0.0
> Ahg923698 jgi|Araly1|923698|scaffold_104979.1
Length=848
Score = 1295 bits (701), Expect = 0.0
Identities = 790/832 (95%), Gaps = 9/832 (1%)
Strand=Plus/Plus
Query 354 TAATG-GAGGGTTATTCAAGAAACGGTGAAATCTCTCCGAAGCTGCTTGACTTGATGATT 412
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 20 TAATGAAAGGG-TATTCAAGAAACGGTGAAATCTCTCCCAAGCTGCTTGACTTGATGATT 78
Query 413 CCACAAGAGAGAAGAAATTGGTTTCACGATGAGAAAAACTCTGTTTTCAAAACAGAGGAG 472
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 79 CCACAAGAGAGAAGAAATTGGATTCACGATGAGAAAAACTCTGTTTTCAAAACAGAGGAG 138
Query 473 AAGAAGCTTGAGCTAAAGCTTGGACCACCTGGTGAAGAAGATGATGATGA---ATCGATG 529
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 139 AAGAAACTTGAGCTAAAGCTTGGACCACCTGGTGAAGAAGATGATGATGATTCATCGATA 198
Query 530 ATAAGACACATGAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAATAC 589
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 199 ATAAGACACATCAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAACAC 258
Query 590 TTCTCTCCTTCTTCCACCAAAACCACATCCCATAAAAGAACTGCTCCTGGTCCAGTGGTG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTCTCTCCTTCTTCCACCAAAACCACATCCCATAAAAGAACTGCTCCTGGTCCAGTGGTG 318
Query 650 GGATGGCCTCCGGTTCGATCCTTCAGGAAGAATTTAGCTAGTGGAAGTTCTTCAAAGCTT 709
||||||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||
Sbjct 319 GGATGGCCTCCCGTTCGATCATTCAGAAAGAATTTAGCTAATGGAAGCTCTTCAAAGCTT 378
Query 710 GGAAATGACTCAACCACCTCCAATGGTGTTACCCTCAAGAACCAAAAGTGTGATGCTGCT 769
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 379 GGAAATGACTCCACCACCTCCAATGGTGTTTTCCTCAAGAACCAAAAGTGTGATGATGAT 438
Query 770 GCTAAGACAACAGAACCAAAGAGACAAGGAGGCATGTTTGTGAAGATCAACATGTATGGT 829
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 439 GTTAAGACAATGGAACCAAAGAGACAAGGAGGCATGTTTGTAAAGATCAACATGTATGGT 498
Query 830 GTTCCCATTGGTCGTAAAGTTGATCTC-AGTGCTCATAATAGCTATGAGCAGTTATCTTT 888
|| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 499 GTACCCATTGGTCGTAAAGTTGATCTCGA-TGCTCATAATAGCTATGAGCAGTTGTCTTT 557
Query 889 CACAGTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAGACTT-TCCATCATCCA 947
||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 558 CACTGTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAGACTTATC-ATCATCTA 616
Query 948 TAGAAGATGAAAAACCAATCACTGGATTATTAGATGGGAATGGAGAATATACTCTTACAT 1007
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 617 TAGAAGATGAAAAACCAATCACTGGATTATTGGATGGGAATGGAGAATATACTCTTACTT 676
Query 1008 ATGAAGACAATGAAGGAGACAAGATGCTTGTAGGAGATGTTCCATGGCAAATGTTTGTGT 1067
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 677 ATGAAGACAACGAAGGAGACAAGATGCTTGTAGGAGATGTTCCATGGCAAATGTTTGTAT 736
Query 1068 CTTCGGTGAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATATG 1127
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 737 CTTCAGTGAAGAGGCTGCGTGTGATTAAAACCTCTGAGATTTCTTCAGCATTAACATATG 796
Query 1128 GAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTACAGC 1179
||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 797 GAAATGGTAAGCAAGAGAAGATGAGAATATGAAGAAAAAGATCTTTTACAGC 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5