BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51960.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314546 jgi|Araly1|314546|fgenesh1_pm.C_scaffold_1003326 1365 0.0
> Ahg314546 jgi|Araly1|314546|fgenesh1_pm.C_scaffold_1003326
Length=1038
Score = 1365 bits (739), Expect = 0.0
Identities = 955/1057 (90%), Gaps = 24/1057 (2%)
Strand=Plus/Plus
Query 1 ATGGGCAGAGCAGCAAGATGGTTTAAGGGCATGTTTGGCACGAAGAAGAGTAAAGATAGA 60
||||||||||||| ||||||||||||||| | ||||| | ||||||||||| ||| |||
Sbjct 1 ATGGGCAGAGCAGTGAGATGGTTTAAGGGCTTTTTTGGTATGAAGAAGAGTAGAGAAAGA 60
Query 61 AGCCACGTTTCCGGCGGAGACTCCGTCAAAGGCGGCGACCATTCCGGCGACTTCAATGTT 120
||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 61 AGCCACGTTTCCGGCGGCGACTCCGACAAAGGTGGCGACCATTCCGGCGACTTCAATGTT 120
Query 121 CCTAGGGACTCTGTTTTGTTGGGAACTATTT-TGACGGATACAGAGAAAGATCAGAACAA 179
|||||||||||||||| | |||||||| ||| |||| ||||||||||| || ||||||||
Sbjct 121 CCTAGGGACTCTGTTTGGCTGGGAACT-TTTCTGACTGATACAGAGAAGGAACAGAACAA 179
Query 180 GAACGCAATTGCGGTTGCAACCGCTACGGCCACTGCCGCAGACGCAGCGGTTTCGGCGGC 239
|||||||||||||||||||| | | |||||||| || || ||||| | |||||
Sbjct 180 GAACGCAATTGCGGTTGCAA---C-A--GCCACTGCTGCTGA---AGCGG---CTGCGGC 227
Query 240 TGTGGTTAGACTGACAAGTGAAGGAAGAGCGGGAGATATCATCATCACGAAGGAGGAGCG 299
||||||||||||||| |||||| | ||||||||||||| |||| || | |||||||||
Sbjct 228 TGTGGTTAGACTGACTAGTGAA-G--GAGCGGGAGATATGATCA-CA--AGGGAGGAGCG 281
Query 300 GTGGGCTGCGGTCAAAATACAAAAAGTCTTCAGGGGCTCTTTGGCGAGGAAAGCATTAAG 359
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 282 GTGGGCCGCCGTGAAAATACAAAAAGTCTTCAGGGGCTCTTTGGCAAGGAAAGCATTAAG 341
Query 360 AGCTTTGAAAGGTATAGTGAAGCTACAAGCATTAGTGAGAGGATACTTAGTAAGGAAACG 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 342 AGCTTTGAAAGGTATAGTGAAGCTACAAGCGTTAGTGAGAGGATACTTAGTAAGGAAACG 401
Query 420 CGCGGCCGCAATGTTGCAGAGCATACAAACTTTGATCAGAGTCCAAACCGCTATGCGATC 479
||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 402 CGCGGCCGCGATGCTGCAAAGAATACAAACTTTGATCAGAGTCCAAACCGCTATGCGATC 461
Query 480 AAAACGCATCAATCGCAGCCTCAACAAAGAGTACAACAACATGTTTCAACCTCGACAATC 539
||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 462 GAAACGCATCAATCGCTGTCTCAACAAAGAGTACAACAACACGTTTCAACCTCGACAATC 521
Query 540 -CTTTGATAAGTTTGATGAAGCAACGTTCGATGACAGAAGAACAAAGATTGTAGAGAAGG 598
||| |||||||||||||| ||| ||| |||||| |||||| ||||||||||||||| ||
Sbjct 522 TCTT-GATAAGTTTGATGACGCAGCGTGCGATGAGAGAAGACCAAAGATTGTAGAGATGG 580
Query 599 ACGATAGATACATGAGAAGATCAAGTTCAAGATCAAGATCTAGACAAGTGCACAATGTTG 658
|||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 581 ACGATATATACATGAGGAGATCAAGTTCAAGATCAAAATCCAGACAAGTGCACAATATTG 640
Query 659 TTTCAATGTCTGACTATGAAGGCGATTTTGTTTACAAAGGGAATGATTTGGAGTTGTGTT 718
|| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 641 TTGCAATGTCTGACTATGAAGACGATTTTGTTTACAAAGCAAATGATTTGGAGTTGAGTT 700
Query 719 TCTCGGATGAGAAGTGGAAGTTTGCTACCGCGCAGAACACGCCGAGATTATTGCATCACC 778
|||||||||||||||||||||||||||| ||||||||||| |||||||| | ||| ||||
Sbjct 701 TCTCGGATGAGAAGTGGAAGTTTGCTACGGCGCAGAACACACCGAGATTCTCGCACCACC 760
Query 779 ATTCTGCTAATAATCGCTATTATGTAATGCAGTCTCCAGCTAAGAGTGTTGGTGGAAAGG 838
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 761 ATTCTGCTAATAATCGCTACTATGTAATGCAGTCTCCAGCTAAGAGTGTTTGTGGAAACA 820
Query 839 CTTTGTGTGACTATGAAAGCAGTGTGAGTACTCCTGGCTACATGGAGAAAACTAAGTCCT 898
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 821 CTTTGTGTGACTATGGTCGCAGTGTGAGTACTCCTGGCTACATGGAGAAAACAAAATCCT 880
Query 899 TTAAGGCAAAAGTGCGTTCACACAGCGCACCGCGCCAGCGATCTGAGAGGCAGAGGTTGT 958
||||||| || || || ||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 881 TTAAGGCGAAGGTACGGTCACATAGCGCACCGCGTCAGCGATCTGAGAGGAAGAGGTTGT 940
Query 959 CGCTAGATGAAGTTATGGCCTCTAAGAGTAGCGTTAGCGGTGTGAGTATGTCGCATCAGC 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 941 CGCTAGATGAAGTTATGGCGTCTAAGAGTAGCGTTAGCGGTGTGAGTATGTTGCAACAGC 1000
Query 1019 -ATCCACCACGCCATTCTTGTTCCTGTGATCCGCTTT 1054
| ||||||||| |||||||||||| ||||||| |||
Sbjct 1001 TA-CCACCACGCTATTCTTGTTCCTATGATCCGTTTT 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5