BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51965.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314547 jgi|Araly1|314547|fgenesh1_pm.C_scaffold_1003327 3151 0.0
> Ahg314547 jgi|Araly1|314547|fgenesh1_pm.C_scaffold_1003327
Length=1953
Score = 3151 bits (1706), Expect = 0.0
Identities = 1872/1954 (96%), Gaps = 4/1954 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTTCTCCGCCGCCGTTTCTTCAACTCCGTCAATACAATCACCAGACCTAACCGA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAGCTTCTTCGCCGCCGTTTCTTCAACTCCGTCAATACAATCACCAGACCAAACCGG 60
Query 61 CGTCACTATGCCACAAAGTATGTCGCCAAAGTCACTTCATCATCTCCCTCCGGCCGATCT 120
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTCAATACGCCACAAAGTATGTCGCCAAAGTCACTTCATCATCTCCCTCCGGCCGATCT 120
Query 121 CTCTCCGCCGAAGTTTCTCTTCCTAATCCTCTTCCCGCCGACGTACGTGGCTACCCTCTA 180
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 121 CTCTCCGCCGAAGTTTCTCTTCCTAATCCTCTCCCCGCCGACGTACGAGGTTACCCTCTA 180
Query 181 CCTCGCCGTCATCTAATCTGCCGAGCCACAAATCTCATCACCGGAGCct-ctaatctctc 239
|||||||||||||| |||||| ||||||| |||||||||| |||| || ||||||||||
Sbjct 181 CCTCGCCGTCATCTCATCTGCAGAGCCACCAATCTCATCATTGGAG-CTACTAATCTCTC 239
Query 240 cgatgctttctctgatctctctgattacctctcttctctctcactctcactcACACCCGA 299
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 240 CGATGCTTTCTCTGATCTCTCTGATTACCTCTCTTCTCTCACACTCTCCCTCACTCCCGA 299
Query 300 CGAAGCTTCAGAGATTCTCAAATCCCTAAATTCACCTCTCCTCGCCGTGGAATTTTTCAA 359
||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||
Sbjct 300 CGAAGCTTCAGAGATTCTCAAATCCCTAAATTCTCCTCTCGTCGCCGTCGAGTTTTTCAA 359
Query 360 ATTAGTCCCTTCTCTTTGCCCTTACTCACAAAATGACCCTTTCCTTTACAATCGTATCAT 419
||| |||||||||||||||||| |||| |||||||||||||| || |||||||| |||||
Sbjct 360 ATTCGTCCCTTCTCTTTGCCCTAACTCTCAAAATGACCCTTTTCTCTACAATCGAATCAT 419
Query 420 CTTAATCCTCTCAAGGTCAAATCTTCCAGACAGATTCGATCGTGTTCGTTCGATTCTCGA 479
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 420 CTTAATCCTCTCAAGGTCAAATCTTTCAGACAGATTCGATCGTGTTCGCTCGATTCTCGA 479
Query 480 TTCCATGGTGAAATCAAACGTCCATGGAAACATATCAACTGTGAATATCTTAATAGGTTT 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCCATGGTGAAATCTAACGTCCATGGAAACATATCAACTGTGAATATCTTAATAGGTTT 539
Query 540 CTTTGGTAACACGGAAGATTTACAAATGTGTTTAAGATTGGTGAAGAAATGGGATTTAAA 599
||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CTTCGGTGACACGGAAGATTTACAAATGTGTTTAAGATTGGTGAAGAAATGGGGTTTAAA 599
Query 600 GATGAACTCTTTCACTTACAAGTGTCTCCTTCAAGCTTACTTAAGATCTCGTGATTATTC 659
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 600 GATGAACTCTTTCACTTACAAATGTCTCCTTCAAGCTTACTTAAGATCTCGTGATTCTTC 659
Query 660 TAAAGCTTTTGATGTGTATTGTGAGATTAGAAGAGGAGGACATAAACTTGACATCTTTGC 719
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 660 AAAAGCTTTCCATGTGTATTGTGAGATTAGAAGAGGAGGACATAAGCTTGATATCTTTGC 719
Query 720 TTACAATATGTTGCTTGATGCTTTAGCTAAAGATGAAAAGGCTTGTCAAGTTTTTGAAGA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TTACAATATGTTGCTTGATGCTTTAGCTAAAGATGAAAAGGCTTGTCAAGTTTTCGAAGA 779
Query 780 TATGAAGAAGAGGCATTGTAGAAGAGATGAGTATACTTACACGATTATGATCAGGACTAT 839
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 780 TATGAAGAAGAGACATTGTAGAAGAGATGAGTATTCGTACACGATTATGATCAGGACTAT 839
Query 840 GGGGAGGATTGGGAAGTGTGATGAAGCTGTTGGTTTATTTAATGAGATGATTACTGAAGG 899
||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||
Sbjct 840 GGGGAGGATTGGGAAGTATAATGAAGCTGTTGGTTTATTCAATGAGATGATTACCGAAGG 899
Query 900 GCTTACGCTTAATGTTGTTGGTTATAATACTTTGATGCAAGTTCTTGCGAAAGGCAAAAT 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 GCTTACGCTTAATGTTGTTGGTTATAATACTTTGATGCAAGTTCTTGCGAAAGGGAAAAT 959
Query 960 GGTTGATAAGGCGATTCAGGTTTTCTCTAGAATGGTGGAAACGGGTTGTCGGCCGAATGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GGTTGATAAGGCGATTCAGGTTTTCTCTAGAATGGTGGAAACGGGTTGTCGACCGAATGA 1019
Query 1020 GTATACGTATAGTCTTCTTTTGAATCTTTTAGTTGCTGAAGGTCAGCTTGTGAGGTTAGA 1079
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 GTATACGTATAGTCTTGTTTTGAATCTTTTAGTAGCTGAAGGTCAGCTTGTGAGGTTAGA 1079
Query 1080 T-GGAGTTGTGGAGATTTCGAAAAGGTATATGACTCAGGGGATATATTCTTATTTGGTTA 1138
| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGGA-TTGTGGAGATGTCGAAAAGATATATGACTCAGGGGATATATTCTTATTTGGTTA 1138
Query 1139 GAACGTTGAGCAAGTTAGGGCATGTAAGTGAGGCTCACAGGCTGTTTTGTGATATGTGGA 1198
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 GAACGTTGAGCAAGTTAGGGCATGTAAGTGAGGCCCACAGGCTGTTTTGTGATATGTGGA 1198
Query 1199 GCTTCCCTGTGAAAGGAGAGAGAGATAGTTACATGTCGATGCTTGAGAGTTTGTGTGGTG 1258
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 GCTTCCCTGTGAAAGGAGAGAGAGATAGTTACATGTCGATGCTGGAGAGTTTGTGTGGTG 1258
Query 1259 CGGGTAAAACCATTGAAGCGATAGAGATGTTGAGCAAGATTCATGAGAAAGGTGTGGTAA 1318
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 CGGGTAAAACTATTGAAGCGATAGAGATGTTGAGCAAGATTCATGAGAAAGGTGTGGTTA 1318
Query 1319 CTGATACTATGATGTATAACACTGTGTTCTCGGCGCTCGGGAAGCTAAAGCAAATATCTC 1378
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 CTGATACTATGATGTACAACACTGTGTTCTCGGCGCTTGGGAAGCTAAAGCAAATATCTC 1378
Query 1379 ATATTCATGATCTCTTTGAGAAAATGAAAAAGGACGGTCCTTCTCCGGATATATTCACCT 1438
|||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1379 ATATACATGATCTCTTCGAGAAAATGAAAAAAGACGGTCCTTCTCCAGATATATTCACCT 1438
Query 1439 ATAATATACTTATCGCTAGTTTTGGCCGGGTAGGAGAAGTTGATGAGGCTATTAACATAT 1498
| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1439 ACAATATACTTATCTCTAGTTTCGGCCGGGTAGGAGAAGTTGATGAGGCTATTAACATAT 1498
Query 1499 TTGAGGAGCTTGAGAGGAGTGATTGTAAACCCGACATTATTTCTTACAACTCTTTGATTA 1558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTGAGGAGCTTGAGAGGAGTGACTGTAAACCCGACATTATTTCTTACAACTCTTTGATTA 1558
Query 1559 ATTGTTTGGGGAAGAACGGTGATGTTGATGAAGCCCATGTGAGATTCAAGGAGATGCAAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATTGTTTGGGGAAGAACGGTGATGTTGATGAAGCCCATGTGAGATTCAAGGAGATGCAAG 1618
Query 1619 AAAAAGGATTAAACCCTGATGTGGTCACATACAGCACTCTGATGGAATGTTTTGGGAAAA 1678
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1619 AGAAAGGATTAAACCCTGATGTGGTCACATACAGCACTCTGATGGAATGTTTTGGGAAGA 1678
Query 1679 CAGAGAGAGTCGAAATGGCGTATAGTTTGTTCGAAGAGATGCTTGTTAAAGGGTGTCAAC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CAGAGAGAGTCGAAATGGCGTATAGTTTGTTCGAAGAGATGCTTGTTAAAGGGTGTCAAC 1738
Query 1739 CAAACATTGTAACGTACAACATTTTGCTTGATTGTCTAGAGAAGAACGGGAGAACCGCAG 1798
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1739 CAAACATTGTGACGTACAACATTTTGCTTGATTGTCTAGAGAAGAGCGGGAGAACCGCGG 1798
Query 1799 AAGCAGTTGATCTATACTCAAAGATGAAACAGCAAGGACTCACACCGGATTCCATTACCT 1858
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AAGCAGTTGATCTGTACACAAAGATGAAACAGCAAGGACTCACACCGGATTCCATTACCT 1858
Query 1859 ACACTGTGCTTGAACGGTTGCAGTCTGTCTCTCATGGAAAATCTCGTATCCGTAGGAAGA 1918
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1859 ACACTGTGCTTGAACGGTTGCAGTCTGGCTCTCATGGAAAATCTCGTATCCGTAGGAAGA 1918
Query 1919 ATCCGATAACGGGGTGGGTTGTCAGCCCTTTGTA 1952
|||||||||| || ||||||||||||||| ||||
Sbjct 1919 ATCCGATAACAGGTTGGGTTGTCAGCCCTCTGTA 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5