BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51970.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923701 jgi|Araly1|923701|scaffold_104982.1 532 5e-151
Ahg923702 jgi|Araly1|923702|scaffold_104983.1 394 2e-109
> Ahg923701 jgi|Araly1|923701|scaffold_104982.1
Length=419
Score = 532 bits (288), Expect = 5e-151
Identities = 348/377 (92%), Gaps = 3/377 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGAACTCGATTTGGAATTGGGTTTAGCTCCATATGATCCATGGGTTCTAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGCTCAAGAACTCGATTTGGAATTGGGTTTAGCTCCATATGATCCATGGGTTCTAAAG 81
Query 61 AAGAATTTAACCGAGAGTGATCTTAATA---ATGGTTTTATTATTCTACCTAAACAAGAT 117
|||||| |||||||||||||||||| | |||||||| |||||||||| |||||||||
Sbjct 82 AAGAATCTAACCGAGAGTGATCTTAGTCGTTATGGTTTTGTTATTCTACCGAAACAAGAT 141
Query 118 TTTGAAAAAATAATTCGGCAGATGGAACGTGGTTTGGTCAAGAATTTGGGAAACGGTGTT 177
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 142 TTTGAAAAAATAATTCCGCATATGGAACGTGGTTTGGTCGAGAATTTGGGAAACGGTGTT 201
Query 178 GAAGTGAAAGTCCATATTATAGAGGAAGGTCCTGAATCTGATGATTACACATTAACACTG 237
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 202 GAAGTGAAAGTCCATATTGTAGAGGAAGGTCATGAATCTGATGATTACACATTAACACTG 261
Query 238 GTCAAGTGCAGAGGCAACTGTATGTTCAGAGGAGGATGGTACAATATGGTTAAAGCTAAA 297
|||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 262 ATCAAGTGCAGCGGCAGGTATATGTTGAGAGGAGGATGGTACAATATGGTTAAAGCTAAA 321
Query 298 TGTTACAAACCAGACGATGAAATTGGACTTATGTGGGATAAGTGGTCTCGAAGATTTTTA 357
|||||||| || |||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct 322 GGTTACAAAACAAACGATGAAATTGGACTTACGTGGGATAAGTGGACTCGAAGATTCCTC 381
Query 358 TTTCACCATATTAACTA 374
| ||||||||||||||
Sbjct 382 CTCCACCATATTAACTA 398
> Ahg923702 jgi|Araly1|923702|scaffold_104983.1
Length=390
Score = 394 bits (213), Expect = 2e-109
Identities = 315/364 (87%), Gaps = 8/364 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGAACTCGATTTGGAATTGGGTTTAGCTCCATATGATCCATGGGTTCTAAAG 60
||||||||||| |||||||||||||||||||| |||||| |||| |||||| || |||||
Sbjct 21 ATGGCTCAAGAGCTCGATTTGGAATTGGGTTTGGCTCCACATGAACCATGGATTGTAAAG 80
Query 61 AAGAATTTAACCGAGAGTGATCTTAATAAT---GGTTTTATTATTCTACCTAAACAAGAT 117
||||| ||||||||| ||||||| | || |||| |||||||||| ||||||||
Sbjct 81 AAGAAAATAACCGAGACTGATCTTCGTTATGGCGGTTCGGTTATTCTACCGAAACAAGAG 140
Query 118 TTTGAAA---AAATAATTCGGCAGATGGAACGTGGTTTGGTCAAGAATTTGGGAAACGGT 174
||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 141 TTTGAAACTTTTATAATACCGCAGATGGAACGTGGTTTGGTCGAGAATTTGGGAAACGGT 200
Query 175 GTTGAAGTGAAAGTCCATATTATAGAGGAAGGTCCTGAATCTGATGATTACACATTAACA 234
||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||
Sbjct 201 GTTGAAGTGAAAGTCCATATTGTAGAGGAAGGTCATGAATCTAATGATTACACACTAACG 260
Query 235 CTGGTCAAGTGCAGA-GGCAACTGTATGTTCAGAGGAGGATGGTACAATATGGTTAAAGC 293
||||||||||||| | || | | |||||| || ||||||||| ||||||||| ||||||
Sbjct 261 CTGGTCAAGTGCA-ATGGGAGTTATATGTTGAGTGGAGGATGGCACAATATGGCTAAAGC 319
Query 294 TAAATGTTACAAACCAGACGATGAAATTGGACTTATGTGGGATAAGTGGTCTCGAAGATT 353
||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 320 TAACGGTTACAAACCAAACGATGAAATTGGACTTATGTGGGATAAGTGATCTGGAAGATT 379
Query 354 TTTA 357
|||
Sbjct 380 CTTA 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13392611739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5