BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51980.1 Length=1967 Score E Sequences producing significant alignments: (Bits) Value Ahg474319 jgi|Araly1|474319|fgenesh2_kg.1__4273__AT1G51980.1 2861 0.0 Ahg479109 jgi|Araly1|479109|fgenesh2_kg.3__1810__AT3G16480.1 833 0.0 > Ahg474319 jgi|Araly1|474319|fgenesh2_kg.1__4273__AT1G51980.1 Length=1863 Score = 2861 bits (1549), Expect = 0.0 Identities = 1788/1898 (94%), Gaps = 38/1898 (2%) Strand=Plus/Plus Query 36 TAAATAAACTGAGAAAAAGCCTCCGTCTCCTCCTCTCTCTCTATTCATCAGCCTCAACCT 95 ||||||||||||||||||||||||| | || ||||||||||||||| |||| ||| Sbjct 1 TAAATAAACTGAGAAAAAGCCTCCG-----T-CT-TCTCTCTATTCATCAACCTCGGCCT 53 Query 96 CTCTTTCGTCGTCGACTCAGTTTCCGATTTAGGGTTACCCAATCTTCGCCATGTATCGCA 155 ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 54 CTCTTTCGTCGACGACTCAGTTTCCGATTTAGGGTTTCCCAATCACCGCCATGTATCGCA 113 Query 156 CGGCAGCTTCACGAGCCAGGGCTCTTAAGGGAGTTCTTACTCGTAGTTTGAGACCAGCGC 215 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 114 CGGCAGCTTCACGAGCCAGGGCTCTTAAGGGAGTCCTTACTCGTAGTTTGAGACCAGCGC 173 Query 216 GTTATGCTAGTTCTAGTGCTGTTGCGGAGACGAGTTCGTCAACGCCGGCTTACTTGAGCT 275 ||||||| ||||||||||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct 174 GTTATGCGAGTTCTAGTGCTGTTGCAGCGACAAGTTCGTCAACGCCGGGTTACTTGAGCT 233 Query 276 GGTTGAGTGGTGGGTCTCGTGCTGCGCTTACTTCATTGGATATGCCTCTACAAGGTGTTT 335 ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| Sbjct 234 GGTTGAGTGGTGGGTCTGGTGCTTCGCTTACTTCATTGGATATGCCACTACAAGGTGTTT 293 Query 336 CTCTTCCTCCGCCGCTTGCTGATAAAGTCGAGCCGAGCAAACTTCAGATCACTACTCTTC 395 ||||||||||||| |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 294 CTCTTCCTCCGCCACTTGCTGACCATGTCGAGCCGAGCAAACTTAAGATCACTACTCTTC 353 Query 396 CAAATGGTCTTAAGATAGCCTCAGAGACGACTCCGAATCCGGCAGCTTCGATTGGTTTAT 455 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 354 CAAATGGTCTTAAGATTGCCTCAGAGACGTCTCCGAATCCGGCAGCTTCGATTGGTTTAT 413 Query 456 ATGTTGATTGCGGTTCTATTTATGAGGCGCCTTATTTCCATGGAGCTACACATTTGCTTG 515 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 414 ATGTTGATTGTGGTTCTATTTATGAGGCGCCTTATTTCCATGGAGCTACGCATTTACTTG 473 Query 516 AAAGAATGGCTTTCAAGAGCACGTTGAACAGAACTCATTTTCGTCTTGTGAGGGAAATTG 575 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 474 AAAGAATGGCTTTCAAGAGCACGTTGAACAGAACCCATTTTCGTCTTGTGAGGGAAATAG 533 Query 576 AGGCTATTGGAGGCAACACATCCGCTTCTGCGTCTCGAGAGCAAATGAGTTACACTATTG 635 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 AGGCTATTGGAGGAAACACATCCGCTTCTGCGTCTCGAGAGCAAATGAGTTACACTATTG 593 Query 636 ATGCTCTTAAGACCTATGTCCCTGAAATGGTTGAAGTTCTTATTGACAGTGTTAGAAACC 695 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 594 ATGCTCTTAAGACCTATGTCCCTGAAATGGTCGAAGTTCTTATTGACAGTGTGAGAAATC 653 Query 696 CTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCTACGGAAGATGAAGGTAGAGATAGCGG 755 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 654 CTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCTACGGAAGATGAAGGTAGAGGTAGCGG 713 Query 756 AACTTGCAAAGAACCCTATGGGTTTCCTCTTGGAGGCCATTCATTCTGCTGGTTACTCTG 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AACTTGCAAAGAACCCTATGGGTTTCCTCTTGGAGGCCATTCATTCTGCTGGTTACTCTG 773 Query 816 GTCCATTGGCAAGTCCTCTGTACGCACCGGAGTCTGCTTTAGATAGATTGAATGGGGAGC 875 || |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 774 GTGCATTGGCAAGTCCTCTGTACGCGCCGGAGTCTGCTTTAGATAAATTGAATGGGGAGC 833 Query 876 TCTTGGAAGAGTTTATGACTGAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTG 935 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 834 TCTTGGAAGAGTTTATGACTGAGAATTTCACTGCTACACGGATGGTACTGGCGGCAAGTG 893 Query 936 GAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAACTTCTGACCTTCCTAATG 995 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 894 GAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAATTTCTGACCTTCCTAATG 953 Query 996 TACCACCCCAATTGGCTCCAAAATCTCAGTATGTCGGTGGAGATTTTCGCCAACATACTG 1055 |||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 954 TACCACGCCAAGTGGAGCCAAAATCTCAGTATGTTGGTGGAGATTTTCGCCAACATACTG 1013 Query 1056 GTGGAGAGGCTACACACTTTGCGGTTGCTTTCGAGGTGCCTGGCTGGAATAACGAGAAAG 1115 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1014 GTGGAGAGGCTACACACTTTGCGGTTGCTTTTGAGGTGCCTGGCTGGAATAACGAGAAAG 1073 Query 1116 AAGCAGTCACCGCCACTGTTCTCCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGG 1175 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1074 AAGCTGTCACCGCCACTGTTCTCCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCAG 1133 Query 1176 GAGGTCCTGGAAAAGGAATGCACTCGTGGCTTTATCGCCGTGTTCTAAACGAATATCAGG 1235 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1134 GAGGTCCTGGAAAAGGAATGCACTCGTGGCTCTATCGCCGTGTTCTAAATGAATATCAGG 1193 Query 1236 AGGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACGACACCGGGTTGTTTGGAATCT 1295 | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1194 AAGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACAACACCGGATTGTTTGGAATCT 1253 Query 1296 ATGGTTGCTCGAGTCCTCAATTCGCTGCAAAAGCAATTGAATTAGCAGCTAAAGAACTCA 1355 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1254 ATGGTTGCTCGAGTCCTGAATTCGCTGCAAAAGCAATTGAATTAGCAGCTAAAGAACTGA 1313 Query 1356 AAGATGTTGCAGGAGGAAAAGTTAACCAGGCACATCTTGATCGTGCCAAGGCAGCCACAA 1415 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1314 AAGATGTTGCAGGAGGAAAAGTTAACCAGGCGCATCTTGACCGTGCCAAGGCAGCCACAA 1373 Query 1416 AATCTGCAGTTCTGATGAATTTGGAATCTCGGATGATTGCAGCAGAAGACATTGGTAGAC 1475 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1374 AATCTGCAGTTCTGATGAATTTGGAATCTCGGATGATTGCTGCAGAAGACATTGGTAGAC 1433 Query 1476 AGATACTTACATACGGAGAGAGGAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAAC 1535 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1434 AGATACTTACATACGGAGAGAGGAAACCAGTTGACCAATTCTTGAAGACAGTAGACCAAC 1493 Query 1536 TAACCTTGAAAGACATTGCAGACTTCACCAGCAAGGTTATTTCAAAGCCTTTGACAATGG 1595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 TAACCTTGAAAGACATTGCAGACTTCACCAGCAAGGTTATTTCAAAGCCTTTGACAATGG 1553 Query 1596 GTTCCTTTGGAGATGTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTT 1655 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1554 GTGCCTTTGGAGATGTGTTGGCTGTTCCGAGCTATGACACCATAAGCAGCAAATTTCGTT 1613 Query 1656 GAAGCAAAACAAACAATTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAAGAAGA 1715 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1614 GAAGCAAAACAAACATTTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAAGATCA 1673 Query 1716 TCTT-GGG-GA-GAAGAAGACCCAACCAAttttaattttaatttttttttttACAATTAC 1772 |||| ||| || ||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1674 TCTTTGGGAGAAGAAGAAGACCCAACCAATTTTAATTTT--TTTTTT------CAATTAC 1725 Query 1773 AGTTTCGTATTTTTATGAAATGGATTTTGTTTCCATCGACAGATATAAATGACTGGATTT 1832 ||| |||||||||||| || ||||||||||||||||| ||||||| ||| | || | | Sbjct 1726 AGTGTCGTATTTTTATTAAGTGGATTTTGTTTCCATCTACAGATA-AAA--A-TG--TCT 1779 Query 1833 TGTCCGGTTTGTCTCTCCAATTTTCAGGAGTATTTGTATTCCAATAAATAATCTTTTACT 1892 ||| ||| ||| || | |||||||||||||||||||||||||||||||| Sbjct 1780 C-TCCAGTT---CTC---AA------G-AGTATTTGTATTCCAATAAATAATCTTTTACT 1825 Query 1893 ACGTGTAATGCAAACAACTTCAGTGGTACAATTAGAAC 1930 ||| |||||||||||||||||||||||||||||||||| Sbjct 1826 ACGGGTAATGCAAACAACTTCAGTGGTACAATTAGAAC 1863 > Ahg479109 jgi|Araly1|479109|fgenesh2_kg.3__1810__AT3G16480.1 Length=1839 Score = 833 bits (451), Expect = 0.0 Identities = 880/1083 (81%), Gaps = 46/1083 (4%) Strand=Plus/Plus Query 141 TCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGGGAGTTCTT-ACTCGT 199 ||| |||||| |||||||||||||||||||||| || ||||||||| ||||| || || Sbjct 88 TCGTCATGTACCGCACGGCAGCTTCACGAGCCAAAGCCCTTAAGGGAATTCTTAAC-CGC 146 Query 200 AGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCTGTTGCGGAGACGAGTTCGTCAAC- 258 | |||| || | | || ||||| ||||||||||||||||| | ||||| || || | Sbjct 147 AATTTGCGAGCTTCTCGCTATGCAAGTTCTAGTGCTGTTGC--A-ACGAGCTCTTCTTCG 203 Query 259 GC--CGGCTTACTTGAGCTGGTTGAGTGGTGGGT-CTCGT-GCTGCGCTTACTTCAT-TG 313 || ||| || || |||||| | ||||| || | ||| | | | | ||| |||| | || Sbjct 204 GCATCGGGTTCCTCCAGCTGGCTAAGTGGAGGCTACTC-TAG-TTCACTTCCTTC-TATG 260 Query 314 GATA-TGCCTCT-ACAAGGTGTTTCTCTTCCTCCGCCGCTTGCTGATAAAGTCGAGCCGA 371 || | | ||| | || ||||| |||||||| || | || ||||| | || ||||| | Sbjct 261 GACATTCCCT-TGAC-TGGTGTCTCTCTTCCACCATCACTAGCTGACCATGTTGAGCCTA 318 Query 372 GCAAACTTCAGATCACTACTCTTCCAAATGGTCTTAAGATAGCCTCAGAGACGACTCCGA 431 |||||||| | || ||||||||||||||||| || || |||||||| |||| | |||||| Sbjct 319 GCAAACTTAAAATTACTACTCTTCCAAATGGACTGAAAATAGCCTCTGAGATGTCTCCGA 378 Query 432 ATCCGGCAGCTTCGATTGGTTTATATGTTGATTGCGGTTCTATTTATGAGGCGCCTTATT 491 |||| || || || ||||||||||||||||| || ||||||||||||||| | ||| | | Sbjct 379 ATCCAGCGGCCTCCATTGGTTTATATGTTGACTGTGGTTCTATTTATGAGACTCCTCAAT 438 Query 492 TCCATGGAGCTACACATTTGCTTGAAAGAATGGCTTTCAAGAGCACGTTGAACAGAA-CT 550 ||| |||||| || || ||||||||||| ||||| |||||||| || |||||||||| | Sbjct 439 TCCGTGGAGCGACGCACTTGCTTGAAAGGATGGCATTCAAGAGTACATTGAACAGAAGC- 497 Query 551 CATTTTCGTCTTGTGAGGGAAATTGAGGCTATTGGAGGCAACACATCCGCTTCTGCGTCT 610 |||||||| ||||| |||||||| |||||||| ||||| || || || |||||||| || Sbjct 498 CATTTTCGCCTTGTAAGGGAAATAGAGGCTATGGGAGGTAATACTTCAGCTTCTGCATCC 557 Query 611 CGAGAGCAAATGAGTTACACTATTGATGCTCTTAAGACCTATG-TCCCTGAAATGGTTGA 669 |||||||| ||| ||||||| || |||||||| || ||||||| |||| || |||||||| Sbjct 558 CGAGAGCAGATGGGTTACACAATCGATGCTCTCAAAACCTATGTTCCC-GAGATGGTTGA 616 Query 670 AGTTCTTATTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCT 729 ||| |||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct 617 AGTGCTTATTGATAGTGTGAGGAACCCTGCTTTTTTGGATTGGGAAGTGAATGAAGAGCT 676 Query 730 ACGGAAGATGAAGGTAGAGATAGCG-GAACTT-GCAAAGAACCCTATGGGTTTCCTCTTG 787 || ||| |||| || ||||||| | ||| || |||| ||| || |||||||| |||||| Sbjct 677 CCGAAAGGTGAAAGTGGAGATAG-GAGAA-TTCGCAACGAATCCAATGGGTTTTCTCTTG 734 Query 788 GAGGCCA-TTCATTCTGCTGGTTACTCTGGTC-CATTGGCAAGTCC-TCTGTACGCACCG 844 || | || |||||||||||||||||||||| | ||||||||| ||| | | || ||||| Sbjct 735 GAAG-CAGTTCATTCTGCTGGTTACTCTGG-CGCATTGGCAAATCCAT-TATATGCACCT 791 Query 845 GAGTCTGC-TTTAGATAGATTGAATGGGGAGC-TCTTGGAAG-AGTTTATGACTGAGAAT 901 || ||||| ||| | |||||| |||||| | |||||| || ||||| | |||||||| Sbjct 792 GAATCTGCAATTA-CTGGATTGACTGGGGA-CGTCTTGG-AGAAGTTTGTTTCTGAGAAT 848 Query 902 TTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACATGAGGAACTTTTAAAA 961 | ||||||| |||| ||||| | || || |||||||| || ||||| |||||| || | Sbjct 849 TACACTGCTCCACGAATGGTCCTAGCAGCTAGTGGAGTTGATCATGAAGAACTTCTATTA 908 Query 962 GTTGCTGAGCCATTAAC-TTCTGACCTTCCTAATGT-ACCAC-CCCAATTGGCTCCAAAA 1018 || | ||||||||| || |||||||||||||||||| ||| | || | || |||||| Sbjct 909 GTGGTTGAGCCATT-ACTTTCTGACCTTCCTAATGTAACC-CGACC-AGCGGAGCCAAAA 965 Query 1019 TCTCAGTATGTCGGTGGAGATTTTCGCCAACATACTGGTGGAGAGGCTACACACTTTGCG 1078 ||||| ||||||||||||||||| || |||||||| |||| |||||||||||| |||||| Sbjct 966 TCTCAATATGTCGGTGGAGATTTCCGTCAACATACGGGTGAAGAGGCTACACATTTTGCG 1025 Query 1079 GTTGCTTTCGAGGTGCCTGGCTGGAATAACGAGAAAGAAGC-AGTCACCGCCACTGTTCT 1137 ||||||| || ||||| || |||||||| |||| ||||| | | | || |||||||| Sbjct 1026 CTTGCTTTTGAAGTGCCGGGATGGAATAATGAGACGGAAGCTA-TTATTGCAACTGTTCT 1084 Query 1138 CCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGTCCTGGAAAAGGAATGCA 1197 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1085 TCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGCCCTGGAAAAGGAATGCA 1144 Query 1198 CTC 1200 ||| Sbjct 1145 CTC 1147 Score = 446 bits (241), Expect = 4e-124 Identities = 378/445 (85%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 1223 AACGAATATCAGGAGGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACGACACCGGG 1282 ||| || ||||| || |||||||||||||||||||||||||| |||||||| | || || Sbjct 1203 AACCAACATCAGCAGTTTCAGTCATGCACTGCATTCACTAGCGTCTTTAACAATACTGGA 1262 Query 1283 TTGTTTGGAATCTATGGTTGCTCGAGTCCTCAATTCGCTGCAAAAGCAATTGAATTAGCA 1342 ||||||||||||||||||||| |||||||| | || ||| || | | ||||||||||| | Sbjct 1263 TTGTTTGGAATCTATGGTTGCACGAGTCCTGACTTTGCTTCACAGGGAATTGAATTAGTA 1322 Query 1343 GCTAAAGAACTCAAAGATGTTGCAGGAGGAAAAGTTAACCAGGCACATCTTGATCGTGCC 1402 |||| ||| | | | |||||| |||||| |||||| ||| |||||||||||| ||| Sbjct 1323 GCTACTGAAATGTATGCTGTTGCTGGAGGAGCAGTTAATCAGAAACATCTTGATCGCGCC 1382 Query 1403 AAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGATGATTGCAGCAGAA 1462 || ||||| || ||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct 1383 AAAGCAGCAACGAAATCTGCAATTCTGATGAATCTAGAATCTCGGATGATTGCAGCAGAA 1442 Query 1463 GACATTGGTAGACAGATACTTACATACGGAGAGAGGAAACCAGTTGATCAATTCTTGAAG 1522 ||||| ||||||||||| || || |||||||||||||||||||| || || ||||||||| Sbjct 1443 GACATAGGTAGACAGATTCTCACTTACGGAGAGAGGAAACCAGTAGACCACTTCTTGAAG 1502 Query 1523 TCAGTAGACCAACTAACCTTGAAAG-ACATTGCAGACTTCACCAGCAAGGTTATTTCAAA 1581 ||||||||||||| ||||| |||| |||||||||| ||||||||||||||||| |||| Sbjct 1503 ACAGTAGACCAACTTACCTT-AAAGGACATTGCAGATTTCACCAGCAAGGTTATCGCAAA 1561 Query 1582 GCCTTTGACAATGGGTTCCTTT-GGAGATGTGTTGGCTGTTCCGAGCTATGACACAATAA 1640 |||||||||||||| || ||| ||||| |||||| |||||| ||||||||| | ||| Sbjct 1562 GCCTTTGACAATGGCATC-TTTCGGAGACGTGTTGAATGTTCCAAGCTATGACTCCGTAA 1620 Query 1641 GCAGCAA-ATTTCGTTGAAGCAAAA 1664 ||| || |||||||||||| |||| Sbjct 1621 GCAA-AAGATTTCGTTGAAGAAAAA 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73933165545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5