BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51980.1
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474319 jgi|Araly1|474319|fgenesh2_kg.1__4273__AT1G51980.1 2861 0.0
Ahg479109 jgi|Araly1|479109|fgenesh2_kg.3__1810__AT3G16480.1 833 0.0
> Ahg474319 jgi|Araly1|474319|fgenesh2_kg.1__4273__AT1G51980.1
Length=1863
Score = 2861 bits (1549), Expect = 0.0
Identities = 1788/1898 (94%), Gaps = 38/1898 (2%)
Strand=Plus/Plus
Query 36 TAAATAAACTGAGAAAAAGCCTCCGTCTCCTCCTCTCTCTCTATTCATCAGCCTCAACCT 95
||||||||||||||||||||||||| | || ||||||||||||||| |||| |||
Sbjct 1 TAAATAAACTGAGAAAAAGCCTCCG-----T-CT-TCTCTCTATTCATCAACCTCGGCCT 53
Query 96 CTCTTTCGTCGTCGACTCAGTTTCCGATTTAGGGTTACCCAATCTTCGCCATGTATCGCA 155
||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 54 CTCTTTCGTCGACGACTCAGTTTCCGATTTAGGGTTTCCCAATCACCGCCATGTATCGCA 113
Query 156 CGGCAGCTTCACGAGCCAGGGCTCTTAAGGGAGTTCTTACTCGTAGTTTGAGACCAGCGC 215
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 114 CGGCAGCTTCACGAGCCAGGGCTCTTAAGGGAGTCCTTACTCGTAGTTTGAGACCAGCGC 173
Query 216 GTTATGCTAGTTCTAGTGCTGTTGCGGAGACGAGTTCGTCAACGCCGGCTTACTTGAGCT 275
||||||| ||||||||||||||||| | ||| |||||||||||||||| |||||||||||
Sbjct 174 GTTATGCGAGTTCTAGTGCTGTTGCAGCGACAAGTTCGTCAACGCCGGGTTACTTGAGCT 233
Query 276 GGTTGAGTGGTGGGTCTCGTGCTGCGCTTACTTCATTGGATATGCCTCTACAAGGTGTTT 335
||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 234 GGTTGAGTGGTGGGTCTGGTGCTTCGCTTACTTCATTGGATATGCCACTACAAGGTGTTT 293
Query 336 CTCTTCCTCCGCCGCTTGCTGATAAAGTCGAGCCGAGCAAACTTCAGATCACTACTCTTC 395
||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 294 CTCTTCCTCCGCCACTTGCTGACCATGTCGAGCCGAGCAAACTTAAGATCACTACTCTTC 353
Query 396 CAAATGGTCTTAAGATAGCCTCAGAGACGACTCCGAATCCGGCAGCTTCGATTGGTTTAT 455
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 354 CAAATGGTCTTAAGATTGCCTCAGAGACGTCTCCGAATCCGGCAGCTTCGATTGGTTTAT 413
Query 456 ATGTTGATTGCGGTTCTATTTATGAGGCGCCTTATTTCCATGGAGCTACACATTTGCTTG 515
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 414 ATGTTGATTGTGGTTCTATTTATGAGGCGCCTTATTTCCATGGAGCTACGCATTTACTTG 473
Query 516 AAAGAATGGCTTTCAAGAGCACGTTGAACAGAACTCATTTTCGTCTTGTGAGGGAAATTG 575
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 474 AAAGAATGGCTTTCAAGAGCACGTTGAACAGAACCCATTTTCGTCTTGTGAGGGAAATAG 533
Query 576 AGGCTATTGGAGGCAACACATCCGCTTCTGCGTCTCGAGAGCAAATGAGTTACACTATTG 635
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGGCTATTGGAGGAAACACATCCGCTTCTGCGTCTCGAGAGCAAATGAGTTACACTATTG 593
Query 636 ATGCTCTTAAGACCTATGTCCCTGAAATGGTTGAAGTTCTTATTGACAGTGTTAGAAACC 695
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 594 ATGCTCTTAAGACCTATGTCCCTGAAATGGTCGAAGTTCTTATTGACAGTGTGAGAAATC 653
Query 696 CTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCTACGGAAGATGAAGGTAGAGATAGCGG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 654 CTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCTACGGAAGATGAAGGTAGAGGTAGCGG 713
Query 756 AACTTGCAAAGAACCCTATGGGTTTCCTCTTGGAGGCCATTCATTCTGCTGGTTACTCTG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AACTTGCAAAGAACCCTATGGGTTTCCTCTTGGAGGCCATTCATTCTGCTGGTTACTCTG 773
Query 816 GTCCATTGGCAAGTCCTCTGTACGCACCGGAGTCTGCTTTAGATAGATTGAATGGGGAGC 875
|| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 774 GTGCATTGGCAAGTCCTCTGTACGCGCCGGAGTCTGCTTTAGATAAATTGAATGGGGAGC 833
Query 876 TCTTGGAAGAGTTTATGACTGAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTG 935
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 834 TCTTGGAAGAGTTTATGACTGAGAATTTCACTGCTACACGGATGGTACTGGCGGCAAGTG 893
Query 936 GAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAACTTCTGACCTTCCTAATG 995
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 894 GAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAATTTCTGACCTTCCTAATG 953
Query 996 TACCACCCCAATTGGCTCCAAAATCTCAGTATGTCGGTGGAGATTTTCGCCAACATACTG 1055
|||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 954 TACCACGCCAAGTGGAGCCAAAATCTCAGTATGTTGGTGGAGATTTTCGCCAACATACTG 1013
Query 1056 GTGGAGAGGCTACACACTTTGCGGTTGCTTTCGAGGTGCCTGGCTGGAATAACGAGAAAG 1115
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 GTGGAGAGGCTACACACTTTGCGGTTGCTTTTGAGGTGCCTGGCTGGAATAACGAGAAAG 1073
Query 1116 AAGCAGTCACCGCCACTGTTCTCCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGG 1175
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 AAGCTGTCACCGCCACTGTTCTCCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCAG 1133
Query 1176 GAGGTCCTGGAAAAGGAATGCACTCGTGGCTTTATCGCCGTGTTCTAAACGAATATCAGG 1235
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1134 GAGGTCCTGGAAAAGGAATGCACTCGTGGCTCTATCGCCGTGTTCTAAATGAATATCAGG 1193
Query 1236 AGGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACGACACCGGGTTGTTTGGAATCT 1295
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1194 AAGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACAACACCGGATTGTTTGGAATCT 1253
Query 1296 ATGGTTGCTCGAGTCCTCAATTCGCTGCAAAAGCAATTGAATTAGCAGCTAAAGAACTCA 1355
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1254 ATGGTTGCTCGAGTCCTGAATTCGCTGCAAAAGCAATTGAATTAGCAGCTAAAGAACTGA 1313
Query 1356 AAGATGTTGCAGGAGGAAAAGTTAACCAGGCACATCTTGATCGTGCCAAGGCAGCCACAA 1415
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1314 AAGATGTTGCAGGAGGAAAAGTTAACCAGGCGCATCTTGACCGTGCCAAGGCAGCCACAA 1373
Query 1416 AATCTGCAGTTCTGATGAATTTGGAATCTCGGATGATTGCAGCAGAAGACATTGGTAGAC 1475
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1374 AATCTGCAGTTCTGATGAATTTGGAATCTCGGATGATTGCTGCAGAAGACATTGGTAGAC 1433
Query 1476 AGATACTTACATACGGAGAGAGGAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAAC 1535
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1434 AGATACTTACATACGGAGAGAGGAAACCAGTTGACCAATTCTTGAAGACAGTAGACCAAC 1493
Query 1536 TAACCTTGAAAGACATTGCAGACTTCACCAGCAAGGTTATTTCAAAGCCTTTGACAATGG 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TAACCTTGAAAGACATTGCAGACTTCACCAGCAAGGTTATTTCAAAGCCTTTGACAATGG 1553
Query 1596 GTTCCTTTGGAGATGTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTT 1655
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1554 GTGCCTTTGGAGATGTGTTGGCTGTTCCGAGCTATGACACCATAAGCAGCAAATTTCGTT 1613
Query 1656 GAAGCAAAACAAACAATTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAAGAAGA 1715
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1614 GAAGCAAAACAAACATTTTGCCAAATCAACAATATTTTGGGACTTGTAAAATAAAGATCA 1673
Query 1716 TCTT-GGG-GA-GAAGAAGACCCAACCAAttttaattttaatttttttttttACAATTAC 1772
|||| ||| || ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1674 TCTTTGGGAGAAGAAGAAGACCCAACCAATTTTAATTTT--TTTTTT------CAATTAC 1725
Query 1773 AGTTTCGTATTTTTATGAAATGGATTTTGTTTCCATCGACAGATATAAATGACTGGATTT 1832
||| |||||||||||| || ||||||||||||||||| ||||||| ||| | || | |
Sbjct 1726 AGTGTCGTATTTTTATTAAGTGGATTTTGTTTCCATCTACAGATA-AAA--A-TG--TCT 1779
Query 1833 TGTCCGGTTTGTCTCTCCAATTTTCAGGAGTATTTGTATTCCAATAAATAATCTTTTACT 1892
||| ||| ||| || | ||||||||||||||||||||||||||||||||
Sbjct 1780 C-TCCAGTT---CTC---AA------G-AGTATTTGTATTCCAATAAATAATCTTTTACT 1825
Query 1893 ACGTGTAATGCAAACAACTTCAGTGGTACAATTAGAAC 1930
||| ||||||||||||||||||||||||||||||||||
Sbjct 1826 ACGGGTAATGCAAACAACTTCAGTGGTACAATTAGAAC 1863
> Ahg479109 jgi|Araly1|479109|fgenesh2_kg.3__1810__AT3G16480.1
Length=1839
Score = 833 bits (451), Expect = 0.0
Identities = 880/1083 (81%), Gaps = 46/1083 (4%)
Strand=Plus/Plus
Query 141 TCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGGGAGTTCTT-ACTCGT 199
||| |||||| |||||||||||||||||||||| || ||||||||| ||||| || ||
Sbjct 88 TCGTCATGTACCGCACGGCAGCTTCACGAGCCAAAGCCCTTAAGGGAATTCTTAAC-CGC 146
Query 200 AGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCTGTTGCGGAGACGAGTTCGTCAAC- 258
| |||| || | | || ||||| ||||||||||||||||| | ||||| || || |
Sbjct 147 AATTTGCGAGCTTCTCGCTATGCAAGTTCTAGTGCTGTTGC--A-ACGAGCTCTTCTTCG 203
Query 259 GC--CGGCTTACTTGAGCTGGTTGAGTGGTGGGT-CTCGT-GCTGCGCTTACTTCAT-TG 313
|| ||| || || |||||| | ||||| || | ||| | | | | ||| |||| | ||
Sbjct 204 GCATCGGGTTCCTCCAGCTGGCTAAGTGGAGGCTACTC-TAG-TTCACTTCCTTC-TATG 260
Query 314 GATA-TGCCTCT-ACAAGGTGTTTCTCTTCCTCCGCCGCTTGCTGATAAAGTCGAGCCGA 371
|| | | ||| | || ||||| |||||||| || | || ||||| | || ||||| |
Sbjct 261 GACATTCCCT-TGAC-TGGTGTCTCTCTTCCACCATCACTAGCTGACCATGTTGAGCCTA 318
Query 372 GCAAACTTCAGATCACTACTCTTCCAAATGGTCTTAAGATAGCCTCAGAGACGACTCCGA 431
|||||||| | || ||||||||||||||||| || || |||||||| |||| | ||||||
Sbjct 319 GCAAACTTAAAATTACTACTCTTCCAAATGGACTGAAAATAGCCTCTGAGATGTCTCCGA 378
Query 432 ATCCGGCAGCTTCGATTGGTTTATATGTTGATTGCGGTTCTATTTATGAGGCGCCTTATT 491
|||| || || || ||||||||||||||||| || ||||||||||||||| | ||| | |
Sbjct 379 ATCCAGCGGCCTCCATTGGTTTATATGTTGACTGTGGTTCTATTTATGAGACTCCTCAAT 438
Query 492 TCCATGGAGCTACACATTTGCTTGAAAGAATGGCTTTCAAGAGCACGTTGAACAGAA-CT 550
||| |||||| || || ||||||||||| ||||| |||||||| || |||||||||| |
Sbjct 439 TCCGTGGAGCGACGCACTTGCTTGAAAGGATGGCATTCAAGAGTACATTGAACAGAAGC- 497
Query 551 CATTTTCGTCTTGTGAGGGAAATTGAGGCTATTGGAGGCAACACATCCGCTTCTGCGTCT 610
|||||||| ||||| |||||||| |||||||| ||||| || || || |||||||| ||
Sbjct 498 CATTTTCGCCTTGTAAGGGAAATAGAGGCTATGGGAGGTAATACTTCAGCTTCTGCATCC 557
Query 611 CGAGAGCAAATGAGTTACACTATTGATGCTCTTAAGACCTATG-TCCCTGAAATGGTTGA 669
|||||||| ||| ||||||| || |||||||| || ||||||| |||| || ||||||||
Sbjct 558 CGAGAGCAGATGGGTTACACAATCGATGCTCTCAAAACCTATGTTCCC-GAGATGGTTGA 616
Query 670 AGTTCTTATTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCT 729
||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 617 AGTGCTTATTGATAGTGTGAGGAACCCTGCTTTTTTGGATTGGGAAGTGAATGAAGAGCT 676
Query 730 ACGGAAGATGAAGGTAGAGATAGCG-GAACTT-GCAAAGAACCCTATGGGTTTCCTCTTG 787
|| ||| |||| || ||||||| | ||| || |||| ||| || |||||||| ||||||
Sbjct 677 CCGAAAGGTGAAAGTGGAGATAG-GAGAA-TTCGCAACGAATCCAATGGGTTTTCTCTTG 734
Query 788 GAGGCCA-TTCATTCTGCTGGTTACTCTGGTC-CATTGGCAAGTCC-TCTGTACGCACCG 844
|| | || |||||||||||||||||||||| | ||||||||| ||| | | || |||||
Sbjct 735 GAAG-CAGTTCATTCTGCTGGTTACTCTGG-CGCATTGGCAAATCCAT-TATATGCACCT 791
Query 845 GAGTCTGC-TTTAGATAGATTGAATGGGGAGC-TCTTGGAAG-AGTTTATGACTGAGAAT 901
|| ||||| ||| | |||||| |||||| | |||||| || ||||| | ||||||||
Sbjct 792 GAATCTGCAATTA-CTGGATTGACTGGGGA-CGTCTTGG-AGAAGTTTGTTTCTGAGAAT 848
Query 902 TTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACATGAGGAACTTTTAAAA 961
| ||||||| |||| ||||| | || || |||||||| || ||||| |||||| || |
Sbjct 849 TACACTGCTCCACGAATGGTCCTAGCAGCTAGTGGAGTTGATCATGAAGAACTTCTATTA 908
Query 962 GTTGCTGAGCCATTAAC-TTCTGACCTTCCTAATGT-ACCAC-CCCAATTGGCTCCAAAA 1018
|| | ||||||||| || |||||||||||||||||| ||| | || | || ||||||
Sbjct 909 GTGGTTGAGCCATT-ACTTTCTGACCTTCCTAATGTAACC-CGACC-AGCGGAGCCAAAA 965
Query 1019 TCTCAGTATGTCGGTGGAGATTTTCGCCAACATACTGGTGGAGAGGCTACACACTTTGCG 1078
||||| ||||||||||||||||| || |||||||| |||| |||||||||||| ||||||
Sbjct 966 TCTCAATATGTCGGTGGAGATTTCCGTCAACATACGGGTGAAGAGGCTACACATTTTGCG 1025
Query 1079 GTTGCTTTCGAGGTGCCTGGCTGGAATAACGAGAAAGAAGC-AGTCACCGCCACTGTTCT 1137
||||||| || ||||| || |||||||| |||| ||||| | | | || ||||||||
Sbjct 1026 CTTGCTTTTGAAGTGCCGGGATGGAATAATGAGACGGAAGCTA-TTATTGCAACTGTTCT 1084
Query 1138 CCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGTCCTGGAAAAGGAATGCA 1197
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1085 TCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGCCCTGGAAAAGGAATGCA 1144
Query 1198 CTC 1200
|||
Sbjct 1145 CTC 1147
Score = 446 bits (241), Expect = 4e-124
Identities = 378/445 (85%), Gaps = 6/445 (1%)
Strand=Plus/Plus
Query 1223 AACGAATATCAGGAGGTTCAGTCATGCACTGCATTCACTAGCATCTTTAACGACACCGGG 1282
||| || ||||| || |||||||||||||||||||||||||| |||||||| | || ||
Sbjct 1203 AACCAACATCAGCAGTTTCAGTCATGCACTGCATTCACTAGCGTCTTTAACAATACTGGA 1262
Query 1283 TTGTTTGGAATCTATGGTTGCTCGAGTCCTCAATTCGCTGCAAAAGCAATTGAATTAGCA 1342
||||||||||||||||||||| |||||||| | || ||| || | | ||||||||||| |
Sbjct 1263 TTGTTTGGAATCTATGGTTGCACGAGTCCTGACTTTGCTTCACAGGGAATTGAATTAGTA 1322
Query 1343 GCTAAAGAACTCAAAGATGTTGCAGGAGGAAAAGTTAACCAGGCACATCTTGATCGTGCC 1402
|||| ||| | | | |||||| |||||| |||||| ||| |||||||||||| |||
Sbjct 1323 GCTACTGAAATGTATGCTGTTGCTGGAGGAGCAGTTAATCAGAAACATCTTGATCGCGCC 1382
Query 1403 AAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGATGATTGCAGCAGAA 1462
|| ||||| || ||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1383 AAAGCAGCAACGAAATCTGCAATTCTGATGAATCTAGAATCTCGGATGATTGCAGCAGAA 1442
Query 1463 GACATTGGTAGACAGATACTTACATACGGAGAGAGGAAACCAGTTGATCAATTCTTGAAG 1522
||||| ||||||||||| || || |||||||||||||||||||| || || |||||||||
Sbjct 1443 GACATAGGTAGACAGATTCTCACTTACGGAGAGAGGAAACCAGTAGACCACTTCTTGAAG 1502
Query 1523 TCAGTAGACCAACTAACCTTGAAAG-ACATTGCAGACTTCACCAGCAAGGTTATTTCAAA 1581
||||||||||||| ||||| |||| |||||||||| ||||||||||||||||| ||||
Sbjct 1503 ACAGTAGACCAACTTACCTT-AAAGGACATTGCAGATTTCACCAGCAAGGTTATCGCAAA 1561
Query 1582 GCCTTTGACAATGGGTTCCTTT-GGAGATGTGTTGGCTGTTCCGAGCTATGACACAATAA 1640
|||||||||||||| || ||| ||||| |||||| |||||| ||||||||| | |||
Sbjct 1562 GCCTTTGACAATGGCATC-TTTCGGAGACGTGTTGAATGTTCCAAGCTATGACTCCGTAA 1620
Query 1641 GCAGCAA-ATTTCGTTGAAGCAAAA 1664
||| || |||||||||||| ||||
Sbjct 1621 GCAA-AAGATTTCGTTGAAGAAAAA 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5