BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51990.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923704 jgi|Araly1|923704|scaffold_104985.1 433 2e-120
> Ahg923704 jgi|Araly1|923704|scaffold_104985.1
Length=808
Score = 433 bits (234), Expect = 2e-120
Identities = 309/344 (90%), Gaps = 10/344 (3%)
Strand=Plus/Plus
Query 388 ACAAAAGCCAAGGGAGGTGTATGGTCTTACCTTACGGAGGCAATACAAGAAGGCGGAGCA 447
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 122 ACAAAAGCCAAGGGAGGTGTATGGTCTTACCTCACGGAGGCAATACAAGAAGGTGGAGCA 181
Query 448 TCGGC----ATGGGAGCGAGCTAATGAGGCATTGATCTTTGAATACATGAAGAAAAATG- 502
||||| || ||| ||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 182 TCGGCATATATATGAGGGAGCTAATGGGGCATTGGTCTTTGAATACATGAAGGAAAATGC 241
Query 503 AGAAT-TTAAAGAAAATTTTCAATGAATCGATGACGAATCATACATCAATAGTAATGAAG 561
| ||| | ||| ||| ||||| || ||||||||| ||||||||||||||||||||||
Sbjct 242 A-AATACT-AAGGAAAGATTCAACGAGGCGATGACGAGTCATACATCAATAGTAATGAAG 299
Query 562 AAAATACTAGAGAATTACATTGGTTTTGAAGGTGTGAGTGACTTTG-TAGATGTAGGAGG 620
||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||||||
Sbjct 300 AAAATACTAGAGAATTACAATGGTTTTGAAAGTTTGAGTGA-TTTGGTAGATGTAGGAGG 358
Query 621 AAGCTTAGGCAGTAATCTTGCCCAAATCCTCTCCAAGTACCCACATATCAAAGGCATCAA 680
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 359 AAGCTTAGGCAGTAATCTTACCCAAATCCTCTCCAAGTACCTGCATATCAAAGGTGTCAA 418
Query 681 CTTCGACTTGCCTCACATAGTCAAAGAAGCTCCCCAAATTCATG 724
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 CTTCGACTTGCCTCACATTGTCAAAGAAGCTCCCCAAATTCATG 462
Score = 388 bits (210), Expect = 3e-107
Identities = 277/309 (90%), Gaps = 5/309 (2%)
Strand=Plus/Plus
Query 788 AGTGGATACTTCATGATTGGAACGATGAAAAATGTGTGGAGATACTAAAAAACTGTAAGA 847
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 481 AGTGGATACTTCATGATTGGAACGATGAAAAATGTGTGGAAATACTAAAAAAGTGTAAGA 540
Query 848 AAGCATTACCGGAAACTGGGCGAATAATTGTAATTGAAATGATAGTACCCCGAGAGGTAT 907
||||| ||||||||||||| |||| |||||||||||||||||| ||| ||||| ||||
Sbjct 541 AAGCACTACCGGAAACTGGAAGAATCATTGTAATTGAAATGATATTACTGCGAGAAGTAT 600
Query 908 CAGAAACCGATCTTGCAACCAAGAACTCACTCAGTGCAGATTTGACGATGATGAGCT-TA 966
||||||||||| ||||||||||||| ||| | || ||||||||| ||||||| || ||
Sbjct 601 CAGAAACCGATGTTGCAACCAAGAATTCATTGTGTTTAGATTTGACAATGATGA-CTATA 659
Query 967 ACGTCTGGAGGCAAAGAGAGAACCAAAAAGGAATTTGAAGATCTAGCTAAGGAAGCTGGC 1026
|||||||| || |||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 660 ACGTCTGGGGGGAAAGAGAGAACCGAAGAGGAATTTGAAGATCTAGCTAAGAAAGCTGGC 719
Query 1027 TTTAAGCTCCCAAAGATTATTTACGGCGCGTATTCTTATTGGAT---CATTGAATTATAT 1083
||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 720 TTTAAGCCCCCAAAGATTATTTACGGCGCTTATTCTTTTTGGATGATCATTGAATTATAT 779
Query 1084 CCTAATTGA 1092
|||| ||||
Sbjct 780 CCTACTTGA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5