BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52000.1
Length=2451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914363 jgi|Araly1|914363|Al_scaffold_0001_4617 1286 0.0
Ahg474322 jgi|Araly1|474322|fgenesh2_kg.1__4276__AT1G52030.1 514 1e-144
> Ahg914363 jgi|Araly1|914363|Al_scaffold_0001_4617
Length=960
Score = 1286 bits (696), Expect = 0.0
Identities = 835/903 (92%), Gaps = 6/903 (1%)
Strand=Plus/Plus
Query 1359 AAGTTGGAAGCACAAGGAGGCAATGGAGGAAATCAATGGGACGACGGAACCGATCATGAT 1418
||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||
Sbjct 61 AAGTTGGAAGCACAAGGAGGCAAAGAAGGAAATCAATGGGACGACGGAGCTGATCATGAT 120
Query 1419 GGTGTGATGAAGATACATGTTGCAGTTGGTGGTCTAGGAATTGAGCAAAT-TAGATTTGA 1477
||||| ||||||||||||||||||| |||||||||||||||||| | ||| |||||||||
Sbjct 121 GGTGTTATGAAGATACATGTTGCAGCTGGTGGTCTAGGAATTGAAC-AATGTAGATTTGA 179
Query 1478 TTATGTCAAGAACGGACAGTTGAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGG 1537
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTATGTCAAGAACGGACAGTCAAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGG 239
Query 1538 CACTTCAACGATTGAGATTAGCCATCCGGACGAGTATCTTGTTTCCGTCGAGGGGTT-GT 1596
|| ||||||| ||| ||| | ||||| || |||||||||||||||||| | ||||| ||
Sbjct 240 CAGTTCAACGTTTGTGATCAATCATCCCGAAGAGTATCTTGTTTCCGTC-AAGGGTTGGT 298
Query 1597 ACGACTCTTCCAATATCATTCAAGGAATCCAGTTTCAATCCAACAAACACACTTCTCAGT 1656
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 299 ACGACTCTTCCAATATCATTCAAGGAATTCAGTTTAAATCCAACAAACACACTTCTCAGT 358
Query 1657 ACTTTGGATATGAATATTATGGAGATGGTACACAATTTTCACTTCAAGTTAATGAAAAGA 1716
|||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 359 ACTTTGGATATGTATATTCTGGAGATGGTAAACAATTTTCACTTCAAGTTGATGACAAGA 418
Query 1717 AGATCATTGGTTTCCATGGTTTTGCCGACTCACACCTTAATTCTCTTGGAGCTTATTTCG 1776
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 419 AGATCATTGGTTTCCATGGTTTTGCCGACTCGCACCTTAATTCTCTTGGCGCTTATTTCG 478
Query 1777 TTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAG 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAG 538
Query 1837 GAGGAAGTTATGGAGAAACATTTGACGATGGTGCTTTCGATCATGTAAGAAAGGTTTATG 1896
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 GAGGAAATTATGGAGAAACCTTTGATGATGGTGCTTTCGATCATGTAAGAAAGGTTTATG 598
Query 1897 TTGGTCAAGGTGATTCTGGTGTAGCTTATGTCAAGTTCGATTATGAAAAAGACGGTAAAA 1956
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 599 TTGGTCAAGGTGATTCCGGTGTAGCTTATGTCAAGTTCGATTATGAGAAAGACGGGAAAA 658
Query 1957 -AGGAGACACAAGAACATGGAAAAATGACATTGTCAGGAACAGAGGAGTTTGAGGTTGAT 2015
|| |||||| || |||||| |||||||||||| || |||||||||||||||||||||
Sbjct 659 TAG-AGACACGTGAGCATGGACAAATGACATTGTTAGCTACAGAGGAGTTTGAGGTTGAT 717
Query 2016 TCAGACGATTACATAACATCAATGGAGGTTTATGTCGACAAAGTCTACGGTTATAAAAGC 2075
| ||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 718 TTAGATGATTTCATAACATCAATGGAAGTCTATGTCGACAAAGTCTACGGTTATAAAAGC 777
Query 2076 GAAATCGTCATTGCTCTTACCTTCAAGACCTTTAAGGGTGAAACTTCTCCACGTTTTGGA 2135
|||| |||| |||||||||||||||| ||||||||||| |||| || || |||||||||
Sbjct 778 GAAACCGTCGTTGCTCTTACCTTCAAAACCTTTAAGGGCAAAACCTCACCGCGTTTTGGA 837
Query 2136 ATAGAGACTGAGAATAAATATGAAGTTAAAGACGGTAAAGGAGGAAAACTTGCTGGTTTC 2195
|||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 838 GTAGAGACTGAGAATAAGTATGAAGTTAAAGATGGTAAAGGAGGAAAACTTTCTGGTTTC 897
Query 2196 CATGGAAAAGCTAGCGATGTTCTTTATGCTATTGGTGCTTATTTCATTCCAGCAGCAAAT 2255
|||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 898 CATGGAAAAGCTAGTGATGTTCTTTATGCTCTTGGTGCTTATTTCGCTCCAACAGCAAAT 957
Query 2256 TAG 2258
|||
Sbjct 958 TAG 960
> Ahg474322 jgi|Araly1|474322|fgenesh2_kg.1__4276__AT1G52030.1
Length=2186
Score = 514 bits (278), Expect = 1e-144
Identities = 423/492 (86%), Gaps = 14/492 (3%)
Strand=Plus/Plus
Query 1766 AGCTTATTTCGTTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGT 1825
||||||||| | || ||||| |||||||| | ||||||| ||||||||||||||||
Sbjct 1176 AGCTTATTTTGCACCCATCTCTTCCTCTTC-T--TCCTTGA---CTCCTCCCAACAAAGT 1229
Query 1826 TAAAGCTCAAGGAGGAAGTTATGGAGAAACATTTGACGATGGTGCTTTCGATCATGTAAG 1885
||||||||||||||| | ||| |||||||| |||||||||||||| |||||||||||
Sbjct 1230 GGAAGCTCAAGGAGGAAATGGTGGGGAAACATTCGACGATGGTGCTTTTGATCATGTAAG 1289
Query 1886 AAAGGTTTATGTTGGTCAAGGTGATTCTGGTGTAGCTTATGTCAAGTTCGATTATGAAAA 1945
||||||||||||||||||||| || || |||||| |||||||||| ||||| || |||||
Sbjct 1290 AAAGGTTTATGTTGGTCAAGGCGAGTCCGGTGTAACTTATGTCAAATTCGAATACGAAAA 1349
Query 1946 AGAC-GGTAAAAAG-GAGACACAAGAACATGGAAAAATGACATTGTCAGGAACAGAGGAG 2003
|||| || |||| | ||||||| ||| ||||| ||||||||||||| |||||||||||||
Sbjct 1350 AGACAGG-AAAA-GTGAGACACGAGAGCATGGTAAAATGACATTGTTAGGAACAGAGGAG 1407
Query 2004 TTTGAGGTTGATTCAGACGATTACATAACATCAATGGAGGTTTATGTCGACAAAGTCTAC 2063
||||||||||||||||| |||||||| |||||| | | |||| ||||||||||||||
Sbjct 1408 TTTGAGGTTGATTCAGATGATTACATCACATCAGTTCAAGTTTCTGTCGACAAAGTCTTT 1467
Query 2064 GGTTATAAAAGCGAAATCGTCATTGCTCTTACCTTCAAGACCTTTAAGGGTGAAACTTCT 2123
|||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||| ||
Sbjct 1468 GGTTATAACAGCGAAATCGTCACTGCTCTTGTCTTCAAGACCTTTAAGGGTAAAACCTCA 1527
Query 2124 CCA-CGTTTTGGAATAGAGACTGAGAATAAATAT-GAAGTTAAAGACGGTAAAGGAGGAA 2181
| | | ||||||||| | ||||||||| |||| | ||| ||||||||||||| |||||||
Sbjct 1528 C-AGCCTTTTGGAATGGTGACTGAGAAGAAAT-TCGAACTTAAAGACGGTAAGGGAGGAA 1585
Query 2182 AACTTGCTGGTTTCCATGGAAAAGCTAGCGATGTTCTTTATGCTATTGGTGCTTATTTCA 2241
|||||||||| |||||||| |||||||| |||||||| |||||| ||||||||||||||
Sbjct 1586 AACTTGCTGGATTCCATGGGAAAGCTAGTGATGTTCTGTATGCTCTTGGTGCTTATTTCG 1645
Query 2242 TTCCAGCAGCAA 2253
|||| || |||
Sbjct 1646 CTCCAACAACAA 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92368844125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5