BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52030.2
Length=2465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474322 jgi|Araly1|474322|fgenesh2_kg.1__4276__AT1G52030.1 1430 0.0
Ahg914363 jgi|Araly1|914363|Al_scaffold_0001_4617 460 2e-128
Ahg894395 jgi|Araly1|894395|Al_scaffold_0006_2391 309 6e-83
Ahg894377 jgi|Araly1|894377|Al_scaffold_0006_2373 108 2e-22
> Ahg474322 jgi|Araly1|474322|fgenesh2_kg.1__4276__AT1G52030.1
Length=2186
Score = 1430 bits (774), Expect = 0.0
Identities = 931/1008 (92%), Gaps = 6/1008 (1%)
Strand=Plus/Plus
Query 350 TCTTTCAGGTATTT-TCTGAAGTTAAAAGATAGAAATAATGTCTGAAAAGGTGGGAGCGA 408
||| |||||| ||| ||| || |||||||||||||| |||||| ||||||||||||||||
Sbjct 132 TCTCTCAGGT-TTTCTCTAAAATTAAAAGATAGAAAGAATGTCGGAAAAGGTGGGAGCGA 190
Query 409 TGGGTGGTAACAAGGGTGGAGCATTCGACGATGGTGTTTTTGATGGTGTGAAGAAAGTAA 468
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TGGGTGGTAACAAGGGAGGAGCATTCGACGATGGTGTTTTTGATGGTGTGAAGAAAGTAA 250
Query 469 TTGTTGGAAAAGACTTCAACAATGTAACTTATATCAAGGTTGAATACGAAAAGGACGGAA 528
| |||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||
Sbjct 251 TAGTTGGAAAAGACTTCAGCAAGGTAACTTATATCAAGATCGAATACGAAAAGGACGGAA 310
Query 529 AATTCGAAATTCGTGAACACGGGACTAATCGCGGGCAGCTAAAAGAGTTTTCAGTGGATT 588
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 311 AATTCGAAATTCGTGAACACGGGACGAATCGCGGGGAACTAAAAGAGTTTTCAGTGGATT 370
Query 589 ATCCGAATGAATATATCACAGCCGTTGGTGGAAGCTACGACACTGTTTTCGGTTACGGAT 648
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 371 ATCCGAATGAATATATCATAGCCGTTGGTGGAAGCTACGATACTGTTTTCGGTTATGGAT 430
Query 649 CAGCGTTGATCAAGTCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATCCTTG 708
||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 431 CAGAATTGATCAAATCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCGATACTTG 490
Query 709 GTCACACGACATTACTAGGGAATCCAGCTGGGAAAGAATTCATGCTCGAGTCCAAATATG 768
|||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 491 GTCATACGACATTATTAGGGAATCCAGCTGGGAAAGAATTCATGCTAGAGGGCAAAAATG 550
Query 769 GAGGAAAGCTTCTTGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCCATTGGACCTC 828
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 GAGGAAAGCTTCTTGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCTATTGGACCTC 610
Query 829 ACTTCTTTGCTGTGAACTCTTCTCTTAAGCACTTTAAACCGCAAGGTGGGAATGGAGGGA 888
||||||| |||||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 611 ACTTCTTCGCTGTGAATTCTCCTCTCAAGCACTTTAAACTGCAAGGTGGGAATGGAGGGA 670
Query 889 GTGCTTGGGACGATGGTGCTTTTGATGGTGTTAGAAAAGTGCTTGTTGGGCGAAATGGTA 948
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 671 GTGCTTGGGACGATGGTGCTTTTGATGGTGTTAGAAAAGTGCTCGTTGGACGAAATGGTA 730
Query 949 AGTTTGTGAGTTATGTCAGGTTTGAGTATGCGAAAGGAGAAAGAATGGTACCACATGCTC 1008
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 731 AGTTTGTGAGTTATGTGAGGTTTGAGTATGCGAAAGGCGAAAGAATGGTACCACATGCTC 790
Query 1009 ATGGGAAGAGACAAGAAGCTCCACAAGAGTTTGTAGTGGATTATCCTAATGAACATATTA 1068
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 791 ATGGGAAGAGACAAGAAGCTCCACAAGAGTTTGTGGTGGATTATCCTAATGAACATATTA 850
Query 1069 CATCGGTCGAGGGAACAATCGATGGTTACCTTTCGTCGCTGA-AGTTTACGACATCAAAA 1127
|||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||
Sbjct 851 CATCGGTCGAGGGAACAATCGATGGTTACCTTTCTTCGCTGACA-TTTAAGACATCAAAA 909
Query 1128 GGAAGAACCTCCCCTGTTTTTGGGAATGTGGTCGGTAGTAAATTTGTGTTCGAAGAAACA 1187
|||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 910 GGAAGAGTCTCCCCTGCTTTTGGGAATGTGGTTGGTAATAAATTTGTGTTCGAAGAAACA 969
Query 1188 AGTTTTAAACTTGTTGGGTTTTGTGGTCGATCCGGTGAAGCTATTGATGCTCTTGGTGCA 1247
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 970 GGTTTTAAACTTGTTGGGTTTTGTGGTCGGTCTGGTGATGCTATTGATGCTCTTGGTGCA 1029
Query 1248 CATTTTGCCCCTCTTCCTgctcccactccagctcccgcgcccgcgcccgcgcccgctcca 1307
||||||||||||||||| | ||| |||||||||| || || || || || || ||||||
Sbjct 1030 CATTTTGCCCCTCTTCCCGTTCCGGCTCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTCCA 1089
Query 1308 gctccagctccctcgcccgctcccgcttc-tgcgcccgTTCCAGCTCC 1354
||||| ||||| | || ||||| | | | ||| || ||||| |||||
Sbjct 1090 GCTCCCGCTCCAGCTCCAGCTCCAGAT-CATGCTCCTGTTCCTGCTCC 1136
Score = 1314 bits (711), Expect = 0.0
Identities = 897/985 (91%), Gaps = 19/985 (2%)
Strand=Plus/Plus
Query 1381 CTCCTCCTAACAAAGTGGAAGCTCTAGGAGGAAATGGT-GGAACAATATTTGACGATGGT 1439
||||||| |||||||||||||||| ||||||||||||| || | || ||| |||||||||
Sbjct 1214 CTCCTCCCAACAAAGTGGAAGCTCAAGGAGGAAATGGTGGGGA-AACATTCGACGATGGT 1272
Query 1440 GCTTTCGATCATGTAAGAAAGGTTTATATTGGTCAAGGTGATTCTGGTGTAGCTTATGTG 1499
||||| ||||||||||||||||||||| |||||||||| || || |||||| |||||||
Sbjct 1273 GCTTTTGATCATGTAAGAAAGGTTTATGTTGGTCAAGGCGAGTCCGGTGTAACTTATGTC 1332
Query 1500 AAGTTCGAATACAG-AAAAGATGGGAAAAGAGAGACACGGGAGCATGGAAAAATGACAGT 1558
|| ||||||||| | |||||| ||||||| |||||||| |||||||| ||||||||| |
Sbjct 1333 AAATTCGAATAC-GAAAAAGACAGGAAAAGTGAGACACGAGAGCATGGTAAAATGACATT 1391
Query 1559 GTTAGGAACAGAGGAGTTTGAGGTTGAGTCTGATGATTACATCACATCAATTGAAGTTTC 1618
||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||
Sbjct 1392 GTTAGGAACAGAGGAGTTTGAGGTTGATTCAGATGATTACATCACATCAGTTCAAGTTTC 1451
Query 1619 TGTCGACAATGTCTTTGGTTTTAAGAGTGAAATCGTCACTTCTCTTGTCTTCAAGACCTT 1678
||||||||| |||||||||| ||| || |||||||||||| |||||||||||||||||||
Sbjct 1452 TGTCGACAAAGTCTTTGGTTATAACAGCGAAATCGTCACTGCTCTTGTCTTCAAGACCTT 1511
Query 1679 TAAGGG-AATAACCTCACAACCTTTTGGAATGGAGACTGAGAAGAAATTGGAACTTAAAG 1737
|||||| || ||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1512 TAAGGGTAA-AACCTCACAGCCTTTTGGAATGGTGACTGAGAAGAAATTCGAACTTAAAG 1570
Query 1738 ACGGTAAAGGAGGAAAACTTG-TGGGATTCCATGGGAAAGCTAGTGATGTTCTTTATGCT 1796
||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1571 ACGGTAAGGGAGGAAAACTTGCT-GGATTCCATGGGAAAGCTAGTGATGTTCTGTATGCT 1629
Query 1797 CTTGGCGCTTATTTCGCTCCAACAACAAATTCAACTACGCCATCGACTCCTTCTACAT-C 1855
||||| |||||||||||||||||||||| ||| ||||| || | ||| |||||||| | |
Sbjct 1630 CTTGGTGCTTATTTCGCTCCAACAACAACTTCGACTACTCCGTTGACACCTTCTAC-TGC 1688
Query 1856 TAAGAAACTACAAGCAAGAGGTGGAAATGGAGGAGCTTCTTGGGATGATGGTGTTTTTGA 1915
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1689 TAAGAAGCTACAAGCAAGAGGTGGTAATGGAGGAGCTTCTTGGGATGATGGTGTTTTTGA 1748
Query 1916 TGGTGTTAGAAAGATACTTGTAGGTCAAGGAAACGATGGTGTAGCTTTCGTTACGTTTGA 1975
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1749 TGGCGTTAGAAAGATACTTGTAGGTCAAGGAAACGATGGAGTAGCTTTTGTCACGTTTGA 1808
Query 1976 GTACAACAAAGGCTCTCAAGCAATCCTCGGTGATCGTCATGGGAAGCAAACATTACTTGG 2035
||||||||||||||||||||| ||| |||||||| |||||||||| |||||| |||||||
Sbjct 1809 GTACAACAAAGGCTCTCAAGCTATCATCGGTGATGGTCATGGGAAACAAACAGTACTTGG 1868
Query 2036 AACTGAAACGTTTGAGCTTGATTATCCAAGTGAGTACATCACTTCGGTAGAAGGTTACTA 2095
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1869 AACTGAAACGTTTGAGCTTGATTATCCAAGTGAATACATCACTTCGGTGGAAGGTTACTA 1928
Query 2096 TGACAAAAT-TTTCGGAGTTGAAGCTGAAGTGGTGACGAGTCTAACGTTCAAGACTAACA 2154
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 TGATAAAATCTTT-GGAGTTGAAGCTGAAGTGGTGACGAGTCTAACGTTCAAGACTAACA 1987
Query 2155 AGAGAACGTCTCAGCCGTTTGGAATGACTGCTGGGGAACATTTCGAGCTTAACGAGGACG 2214
|||||||||||||||||||||| |||||||||| |||||||||||||| || ||||| |
Sbjct 1988 AGAGAACGTCTCAGCCGTTTGGTTTGACTGCTGGTGAACATTTCGAGCTGAAGGAGGATG 2047
Query 2215 GTTACAAGATCGTTGGGTTCCATGGCAAAGCTGGTGATTTGGTTCATCAGATCGGAGTCC 2274
||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 2048 GTTACAAGATCGTCGGGTTCCATGGAAAAGCTGGTAATGTGGTTCATCAGATCGGAGTCC 2107
Query 2275 ATGCCGTGCCCATTTTCACCAATTACAGATGTGTTTTCTAGTTTC-TTTCTCTGATGATT 2333
||| ||||||||||||||||||||| ||| || | || | ||| |||||||||||||
Sbjct 2108 ATGTCGTGCCCATTTTCACCAATTAGAGA-GT-TATT--A-TTTAGTTTCTCTGATGATA 2162
Query 2334 CCGTTAAATAAGGTCCATGGACCAT 2358
|||| ||||||||||||||||||||
Sbjct 2163 CCGT-AAATAAGGTCCATGGACCAT 2186
> Ahg914363 jgi|Araly1|914363|Al_scaffold_0001_4617
Length=960
Score = 460 bits (249), Expect = 2e-128
Identities = 388/454 (85%), Gaps = 14/454 (3%)
Strand=Plus/Plus
Query 1381 CTCCTCCTAACAAAGTGGAAGCTCTAGGAGGAAATGGTGGA-ACAATATTTGACGATGGT 1439
||||||| |||||||| |||||| |||||||||| |||| | || ||||| ||||||
Sbjct 512 CTCCTCCCAACAAAGTTAAAGCTCAAGGAGGAAATTATGGAGA-AACCTTTGATGATGGT 570
Query 1440 GCTTTCGATCATGTAAGAAAGGTTTATATTGGTCAAGGTGATTCTGGTGTAGCTTATGTG 1499
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 571 GCTTTCGATCATGTAAGAAAGGTTTATGTTGGTCAAGGTGATTCCGGTGTAGCTTATGTC 630
Query 1500 AAGTTCGAATAC-AGAAAAGATGGGAAAAGAGAGACACGGGAGCATGGAAAAATGACAGT 1558
|||||||| || ||||| || ||||||| ||||||||| ||||||||| |||||||| |
Sbjct 631 AAGTTCGATTATGAGAAA-GACGGGAAAATAGAGACACGTGAGCATGGACAAATGACATT 689
Query 1559 GTTAGGAACAGAGGAGTTTGAGGTTGAGTCT-GATGATTACATCACATCAATTGAAGTTT 1617
||||| |||||||||||||||||||| | | ||||||| ||| |||||||| ||||| |
Sbjct 690 GTTAGCTACAGAGGAGTTTGAGGTTGATT-TAGATGATTTCATAACATCAATGGAAGTCT 748
Query 1618 CTGTCGACAATGTCTTTGGTTTTAAGAGTGAAATCGTCACTT-CTCTTGTCTTCAAGACC 1676
||||||||| |||| |||| ||| || |||| |||| || ||||| |||||| |||
Sbjct 749 ATGTCGACAAAGTCTACGGTTATAAAAGCGAAACCGTCG-TTGCTCTTACCTTCAAAACC 807
Query 1677 TTTAAGGG-AATAACCTCACAACCTTTTGGAATGGAGACTGAGAAGAAAT-TGGAACTTA 1734
|||||||| || |||||||| | ||||||| | ||||||||||| || | || || |||
Sbjct 808 TTTAAGGGCAA-AACCTCACCGCGTTTTGGAGTAGAGACTGAGAATAAGTATG-AAGTTA 865
Query 1735 AAGACGGTAAAGGAGGAAAACTTG-TGGGATTCCATGGGAAAGCTAGTGATGTTCTTTAT 1793
|||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 866 AAGATGGTAAAGGAGGAAAACTTTCTGGT-TTCCATGGAAAAGCTAGTGATGTTCTTTAT 924
Query 1794 GCTCTTGGCGCTTATTTCGCTCCAACAACAAATT 1827
|||||||| |||||||||||||||||| ||||||
Sbjct 925 GCTCTTGGTGCTTATTTCGCTCCAACAGCAAATT 958
> Ahg894395 jgi|Araly1|894395|Al_scaffold_0006_2391
Length=492
Score = 309 bits (167), Expect = 6e-83
Identities = 326/402 (81%), Gaps = 14/402 (3%)
Strand=Plus/Plus
Query 429 GCATTCGACGATGGTGTTTTTGATGGTGTGAAGAAAGTAATTGTTGGAAAAGAC-TTCAA 487
|||||||||||||||||||| |||| ||||||||| ||||||| ||| || || ||
Sbjct 10 GCATTCGACGATGGTGTTTTCAATGGCGTGAAGAAAATAATTGTGGGAGAACACATT-GG 68
Query 488 CAATGTAACTTATATCAAGGTTGAATACGAAAAGGACGGAAAATTCGAAATTCGTGAACA 547
| || ||||||||||| | |||||||||||||| || ||||| |||| ||||||||
Sbjct 69 CTGCGTGGCTTATATCAAGATCGAATACGAAAAGGATGGGAAATTTGAAACCCGTGAACA 128
Query 548 CGGGACTAA-TCGC-GGGCAGCTAAAAGAGTTT-TCAGTGGATTATCCGAA-TGAATATA 603
|||||| || |||| ||| | |||||||||||| | ||||||||||| || ||||| ||
Sbjct 129 CGGGAC-AATTCGCAGGG-ATCTAAAAGAGTTTGT-GGTGGATTATCC-AAGTGAATGTA 184
Query 604 TCACAGCCGTTGGTGGAAGCTAC-GACACTGTTTTCGGTTACGGATCAGCGTTGATCAAG 662
||||| || |||||||||||||| | || |||| ||| || | ||| | |||||||
Sbjct 185 TCACATCCTTTGGTGGAAGCTACGGCCA-TGTTAACGGCTATAAAGCAGTGATGATCAAA 243
Query 663 TCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATCCTTGGTCACACGACATT- 721
||| || |||||||||||||||||||||||||||||||| | || ||| | || | |||
Sbjct 244 TCACTAATCTTCAAAACCTCTTATGGAAGAACCTCTCCAGTACTCGGTGAGACCA-ATTC 302
Query 722 ACTAGGGAATCCAGCTGGGAAAGAATTCATGCTCGAGTCCAAATATGGAGGAAAGCTTCT 781
| | || |||||||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 303 ATTTGGAAATCCAGCTGATAATCAATTCATGCTCGAGGGTAAAAATGGAGGAAAGCTTCT 362
Query 782 TGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCCATTGG 823
||| ||||| ||||| ||||||| ||| |||||||||||||
Sbjct 363 TGGATTCCACGGACGCTCTGGTGCTGCTATTGATGCCATTGG 404
> Ahg894377 jgi|Araly1|894377|Al_scaffold_0006_2373
Length=1650
Score = 108 bits (58), Expect = 2e-22
Identities = 136/171 (80%), Gaps = 16/171 (9%)
Strand=Plus/Plus
Query 655 TGATCAAGTCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATCCTT-GGTCAC 713
||||||| || || |||||||||||||||||||||||||||||||||| || ||| |
Sbjct 647 TGATCAAATCGCTATTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATA-TTCGGTGAG 705
Query 714 ACGACATTACTAGGGAATCCAGCTGGGAAAGAATTCATGCTCGAGTCCA-AATATGGAGG 772
|||| ||| || | |||||||||||| |||||||| | || |||||||
Sbjct 706 ACGA-ATTCCT-------C----TGGGAAAGAATTTTTGCTCGAGGGTAGAA-ATGGAGG 752
Query 773 AAAGCTTCTTGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCCATTGG 823
|||||||||||| ||||| ||||| |||||| | ||| |||||||||||||
Sbjct 753 AAAGCTTCTTGGGTTCCACGGACGCTCTGGTCAGGCTATTGATGCCATTGG 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92902107555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5