BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52050.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1 1531 0.0
> Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1
Length=1015
Score = 1531 bits (829), Expect = 0.0
Identities = 959/1021 (94%), Gaps = 12/1021 (1%)
Strand=Plus/Plus
Query 3 CATAATTATCGATCATGTTCATCATCTATCTTTTTATCTTTCTCTCATCTGCCATTATAG 62
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CATACTTATCGATCATGTTCATCATCTATCTTTTTCTCTTTCTCTCATCTGCCATTATAG 60
Query 63 ATTCAAATGGGGTTGCAATGGCCCAAAAGATCGAAGCAATTGGTGGGAAGGGAGGGAAAC 122
||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 61 ATTCAAATGGGTTTGCAATGGCCCAAAAGATAAAAGCAATTGGTGGCAAGGGAGGGAAAC 120
Query 123 GGTGGGATGACGGTG-CGA--ATGATAATGTAGCAAAGGTTTACATACGAGGTGATCATG 179
||||||||| |||| | | |||||||| ||||||||||||| ||||||||||||||||
Sbjct 121 TGTGGGATGATGGTGCCAACCATGATAATATAGCAAAGGTTTATATACGAGGTGATCATG 180
Query 180 AAGGCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATCGTTTAATGGATCAG 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAGGCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATCGCTTAATGGATCAG 240
Query 240 TCCATGGTGTTTCAGCCGACGGTTTCACACAGACGTTTGAGATTGACCATCTCCAGTATG 299
||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 241 TCCATGGTGGTTCAGCCGATGGTTTCACACAAACGTTGGAGATTGACCATCTCCAGTATG 300
Query 300 AACAAATTGTATCTGTTGAGGGTTACTACGACTGGAAGACCGGTGTGATGCAAGCACTCC 359
||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||
Sbjct 301 AACAAATTGTATCTGTTAAGGGTTACTACAACAGGATTACCGGTGTGATGCAAGCACTCC 360
Query 360 AATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTACTAAGTTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 AATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTATTAAGTTTT 420
Query 420 CACTTGGAGTCGATGGAAAAGTCATCGTTGGCTTCCATGGATCTGCT-TGGCGTAGCCTC 478
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||
Sbjct 421 CACTTGGAGTCGATGGAAAAATCATCGTTGGCTTCCATGGATCTGCTCT-GCGTAACCTC 479
Query 479 CGATCTCTTGGTGCATATGTAAAGACTGCTCCTACCAAATCAGAACTCCAGGGTGGCATA 538
|| |||||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||
Sbjct 480 CGCTCTCTTGGGGCATATTTAAAGACTCCTCCTACCAAATCGGAACTCCAAGGTGGCATA 539
Query 539 ACCGGAGGCGAATATTGGGATGATGGTCCTAATTTCGACGGTGTAAGAAAGGTGTATGTT 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCGGAGGCGTATATTGGGATGATGGTCCTAATTTCGACGGTGTAAGAAAGGTGTATGTT 599
Query 599 ACTTTTACTGAAACTCATATAAGGAGTATGAACATTGACTATGACCAAGATGGCCAAGTG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTTTACTGAAACTCATATAAGGAGTATGAACATTGACTATGACCAAGATGGCCAAGTG 659
Query 659 GTGACACGTTATCACGGGATGAAGAATGGAGAAACGCAGGAGTTTGCTGTGGACTTTCCG 718
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 GTAACACGTTCTCACGGGATGAAGAATGGAGAAACACAGGAGTTTGCTGTGGACTTTCCG 719
Query 719 AATGAATATATGACATCTGTGGAGGGTACATACGACCATATCAGTGAGGGTAACTATTTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGAATATATGACATCTGTGGAGGGTACATACGACCATATCAGTGAGGGTAACTATTTG 779
Query 779 GTTCTTACGTCATTGACTTTCAAAACGTCAAAAGGGAGAATCTCTCAGACATTTGGATTG 838
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 780 GTTCTTACGTCATTGACTTTCAAAACATCAAAAGGAAGAATCTCTCAGACATTTGGATTG 839
Query 839 GTCATTGGTACCAAATTTGTGTTGGAGACTAAAGGTAATGTTATCAGT-GGGTTCCATGG 897
|||||||| ||||| ||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 840 GTCATTGGAACCAAGTTTGTGTTGGAGAGTAAAGGTAATGTTATT-GTCGGGTTCCATGG 898
Query 898 AAGAGATGGTGGTTCTTTTGATGCTATTGGAGTATATTTCTCTCCAATGATATCTTCCTA 957
||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 899 AAGGGATGGTGGATCTTTTGATGCTATCGGAGTTTATTTCTCTCCAATGATATCTTCATA 958
Query 958 -AGCTACAGAAGTTTGTTCATGCATGGCTTCACGTATCTTTTACTACTTTAAAATACTTA 1016
||||||| ||||||||||||| | || | ||||||||||||||||||||||| |||
Sbjct 959 GAGCTACACAAGTTTGTTCATGG-TCACT-C--GTATCTTTTACTACTTTAAAATAATTA 1014
Query 1017 T 1017
|
Sbjct 1015 T 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5