BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52060.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314552 jgi|Araly1|314552|fgenesh1_pm.C_scaffold_1003332 1450 0.0
Ahg474325 jgi|Araly1|474325|fgenesh2_kg.1__4279__AT1G52070.1 1003 0.0
Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1 562 2e-159
> Ahg314552 jgi|Araly1|314552|fgenesh1_pm.C_scaffold_1003332
Length=945
Score = 1450 bits (785), Expect = 0.0
Identities = 887/938 (95%), Gaps = 0/938 (0%)
Strand=Plus/Plus
Query 32 TCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTCAAATGGGTTTGCAATGG 91
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 8 TCATCTATGTATTTCTCTTTCTCTCCTCAGCCATTATTGATTCAGATGGGTTTGCAATGG 67
Query 92 CCCAAAAGTTGGAGGCTAAGGGTGGGAAAGGGGGCAAGGAATGGGATGATGGAGCCGGCC 151
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 68 CTCAAAAGTTGGAGGCTAAGGGTGGGAAAGGGGGCAAGGAATGGGATGATGGAGCCAGCC 127
Query 152 ATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATACAATACATCAAAT 211
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 128 ATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATATTGTACATCAAAT 187
Query 212 TTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCCATGGTGTTTCGGGTAGTG 271
|||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 188 TTGAATATGTCAAAGATGGACAATCTGTAGAGGGATCAATCCATGGTGTTTTGGGTAGTG 247
Query 272 GTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAACATATTGTATCTGTTGACG 331
|||||||||| |||||||||||||| || | |||| |||||||||||| ||||||||||
Sbjct 248 GTTTCACACATATGTTCGAGATTGATTACCTAAACAATGAACATATTGTCTCTGTTGACG 307
Query 332 GTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCAAAACCAACCGGAAGACCT 391
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 308 GTTACTACGACAAATCAGGTGTGATGCAAGCGCTTGAATTCAAAACCAACCGGAAGACCT 367
Query 392 CTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCACTTGGTGGGGTAAACGGAA 451
|||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| |
Sbjct 368 CTGAAGTGATTGGATATCCAAAGGGTAATAAAAAGTTTTCACTTGGTGGGGTCAACGGGA 427
Query 452 AGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTAAATTCCATTGGAGCGTATT 511
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 428 AGATGATCACCGGCTTCCATGGATCCGCAGGGAAAGCTCTAAATTCCATTGGAGCATATT 487
Query 512 TAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGTTGGGGCGGCGACTACTGGG 571
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 488 TAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGTTGGGGCGGCGAATACTGGG 547
Query 572 ATGATGGTCCTAATTATGATGGCGTAAGAAAGGTGTATGTTACTTACATGAACACTTGTA 631
||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||
Sbjct 548 ATGATGGTCCTAATTATGACGGCGTAAGAAAGGTGTATATTACTTACATTAGCACTTGTA 607
Query 632 TAAGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGTGACAAGTTCCCACGGGA 691
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TACGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGTGACAAGTTCCCACGGGA 667
Query 692 ACAAGGAGGGAGAGACAGAGGAGTTTGCGATAGACTATCCAAATGAATTTTTGATATCAG 751
||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 668 ACAAGGATGGAGAGACAGAGGAGTTTGCGGTAGACTATCCAAATGAATCTTTGATATCAG 727
Query 752 TGGAGGGTACGTACGACTCAATCCTATTCCCCGATCATTACGTTTTGGTCATTACGTCCT 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 728 TGGAGGGTACGTACGACTCAATCCTATTCCCCGATCATTACGTTTTGGTCATTACGTCGT 787
Query 812 TGAGTTTCAAAACATCGAAAGGTAGAATATCTCCCACATATGGGGTTGTGTCTGGTACCA 871
|||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 788 TGAGTTTCAAAACATCTAAAGGGAGGATATCACCCACATATGGGGTTGTGTCGGGTACCA 847
Query 872 AATTTGTGCTGGAGAGCCAAGGTAATGCAATTGTCGGATTCTATGGGAGAAATGGTGGTG 931
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 848 AATTTGTGTTGGAGAGCCAAGGTAATGCGATTGTCGGATTCCATGGGAGAAATGGTGGTG 907
Query 932 CTTTCGATGCTATTGGGGTTTATTTCTCTCCGATATGA 969
|||||||||||||||||||||||||||||||||| |||
Sbjct 908 CTTTCGATGCTATTGGGGTTTATTTCTCTCCGATGTGA 945
> Ahg474325 jgi|Araly1|474325|fgenesh2_kg.1__4279__AT1G52070.1
Length=1145
Score = 1003 bits (543), Expect = 0.0
Identities = 829/964 (86%), Gaps = 31/964 (3%)
Strand=Plus/Plus
Query 16 ACATCGATCATGATTT-TCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTC 74
||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 14 ACAACGATCATG-TTTATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTC 72
Query 75 AAATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGGGGCAAGGAAT 133
|||||||||||||| ||||||||||||||| || || |||||||| ||||| ||| | |
Sbjct 73 AAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGC-AATCGGTGGGAAGGGGGGGAAGCAGT 131
Query 134 GGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAG 193
|||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 132 GGGATGATGGAGGCGACCATGACAATGTAGCAAAAGTTTATATAAGAGGTGGTCTTGAAG 191
Query 194 GCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCC 253
||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| ||||
Sbjct 192 GCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGATGGATCCATCC 251
Query 254 ATGGTGTTTCGGGTAGTGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAAC 313
|||||||||||||||| ||||||||||| | ||| |||||||| |||| ||| |||||
Sbjct 252 ATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCTAAATAGTGAAT 311
Query 314 ATATTGTATCTGTTGACGGTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCA 373
||||||||||| |||| || |||| |||||| | |||||||||||||||||||||||||
Sbjct 312 ATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGCACTTGAATTCA 371
Query 374 AAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCAC 433
||||||| | ||||| |||||| ||||||| || || ||| ||| |||||| |||||||
Sbjct 372 AAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTACAAAATTTTCAC 431
Query 434 TTGGTGGGGTAAACGG-AAAGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTA 492
| || || || || || ||| ||||| | |||||||||||||||||| ||||||||||||
Sbjct 432 TCGGAGGAGTCAATGGCAAA-ATGATGATTGGCTTCCATGGATCCGCTGGGAAAGCCCTA 490
Query 493 AATTCCATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT 552
|| |||||||| || |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 491 AACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACTCGTAGGTGGT 550
Query 553 -TGG--GGCGGCGACTAC-T-GGGATGATGGTCCTAATTATGATGGCGT-AAGAAAGGTG 606
| || ||||| || | ||||||||||||||||| |||||||||| || |||| |
Sbjct 551 CTAACCGGAGGCGA--ACCTTGGGATGATGGTCCTAATAATGATGGCGTGAA-AAAGATA 607
Query 607 TATGTTACTTACA-TGAACACT-TGTATAAGGAGTATCAACATCGACTACGAAAAAGACG 664
| ||||||||||| | | |||| | ||||||||||||||| | ||||| ||||| ||||
Sbjct 608 TCTGTTACTTACACT-ACCACTCT-TATAAGGAGTATCAATGTTGACTATGAAAAGGACG 665
Query 665 GACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGTTTGCGATAG 724
| |||||||| ||| ||| ||| |||| ||| | ||||| ||||||||||||| | |||
Sbjct 666 GCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTGTGGTAG 725
Query 725 ACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCAATCCTATTCCCCG 784
||||||||||||||| ||||||||||||||||||||| ||| || |||||| | |
Sbjct 726 ACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCC-T-----G 779
Query 785 ATCATTACGTTTTGGTCATTACG-TCCTTGAGT-TTCAAAACATCGAAAGGTAGAATATC 842
|| || ||||||||||||||| | || |||| | ||||||||||| ||||| ||||| ||
Sbjct 780 ATGATAACGTTTTGGTCATTA-GATCGTTGA-TCTTCAAAACATCAAAAGGGAGAATCTC 837
Query 843 TCCCACATATGGGGTTGTGTCTGGTACCAAATTTGTGCTGGAGAGCCAAGGTAATGCAAT 902
||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 838 TCCCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTAT 897
Query 903 TGTCGGATT-CTATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTC 961
||| ||||| | ||||| | |||||||||||||||| ||||| ||||||||||||||||
Sbjct 898 TGTTGGATTTC-ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTC 956
Query 962 CGAT 965
||||
Sbjct 957 CGAT 960
> Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1
Length=1015
Score = 562 bits (304), Expect = 2e-159
Identities = 761/973 (78%), Gaps = 65/973 (7%)
Strand=Plus/Plus
Query 18 ATCGATCATGATT-TTCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTCAA 76
|||||||||| || |||||||| | |||||||||||||| || ||||||||||||||||
Sbjct 8 ATCGATCATG-TTCATCATCTATCTTTTTCTCTTTCTCTCATCTGCCATTATAGATTCAA 66
Query 77 ATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAAG-GGTGGGAAAGG-GGGCAAG-GAAT 133
||||||||||||||||||||||| | | || || ||||| || || ||| || | |
Sbjct 67 ATGGGTTTGCAATGGCCCAAAAGATAAAAGC-AATTGGTGGCAAGGGAGGGAAACTG--T 123
Query 134 GGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAG 193
|||||||||| ||| |||||||||| ||||||| |||||||||||||||| || |||||
Sbjct 124 GGGATGATGGTGCCAACCATGATAATATAGCAAAGGTTTATATACGAGGTGATCATGAAG 183
Query 194 GCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTG-T-AGAGGGATCAAT 251
|||| || ||||||||||| || |||||||| |||||||| || | | | | |||||| |
Sbjct 184 GCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATC-GCTTA-ATGGATCAGT 241
Query 252 CCATGGTGTTTCGG--GTAGTGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGG- 308
|||||||| ||| | | | |||||||||||||| ||| ||||||||| ||| | |
Sbjct 242 CCATGGTGGTTCAGCCG-A-TGGTTTCACACAAACGTTGGAGATTGACCATCTCCA-GTA 298
Query 309 TGAACATATTGTATCTGTTGACGGTTACTTTGACAA-AT--CCGGTGTGATGCAAGCACT 365
|||||| |||||||||||| | ||||||| ||| || |||||||||||||||||||
Sbjct 299 TGAACAAATTGTATCTGTTAAGGGTTACTACAACAGGATTACCGGTGTGATGCAAGCACT 358
Query 366 TGAATTCAAAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAA 425
||||||||||||||| ||||| || ||| | |||||||| | |||| ||| || |
Sbjct 359 CCAATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTATTA-A-- 415
Query 426 GTTTTCACTTGGTGGGGTAAACGGAAAGATGATCAATGGCTTCCATGGATCCGCGG-G-G 483
|||||||||||| | | | ||||| || ||| ||||||||||||||| || | |
Sbjct 416 GTTTTCACTTGGAGTCG-AT--GGAAAAATCATCGTTGGCTTCCATGGATCTGCTCTGCG 472
Query 484 AAAGCCCTAAATTC-CATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACT 542
|| || | || | |||| || ||||||| | | | |||||||| || || |||||
Sbjct 473 TAA-CC-TCCGCTCTC-TTGGGGCATATTTAA-AGAC-T-CCTCCTACCAAATCGGAACT 526
Query 543 CGTAGGTGGT-TGG--GGCGGCG-ACTACTGGGATGATGGTCCTAATTAT-GATGGCGTA 597
| |||||| | || |||| | || ||||||||||||||||||| | || || |||
Sbjct 527 CCAAGGTGGCATAACCGGAGGCGTA-TATTGGGATGATGGTCCTAATT-TCGACGGTGTA 584
Query 598 AGAAAGGTGTATGTTACTT--ACATGAACACTTGTATAAGGAGTATCAACATCGACTACG 655
||||||||||||||||||| || |||| ||| |||||||||||| ||||| ||||| |
Sbjct 585 AGAAAGGTGTATGTTACTTTTAC-TGAA-ACTCATATAAGGAGTATGAACATTGACTATG 642
Query 656 AAAAAGACGGACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGT 715
| |||| || ||||| || ||| |||| ||||||| ||| | ||||| ||| ||||||
Sbjct 643 ACCAAGATGGCCAAGTGGTAACACGTTCTCACGGGATGAAGAATGGAGAAACACAGGAGT 702
Query 716 TTGC-GATAGACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCA-AT 773
|||| | | |||| ||| ||||||| | ||| ||| ||||||||||| |||||| || ||
Sbjct 703 TTGCTG-TGGACTTTCCGAATGAATATATGACATCTGTGGAGGGTACATACGAC-CATAT 760
Query 774 CCTATTCCCCGATCATTACGTTTTGGT-CATTACGTCCTTGAGTTTCAAAACATCGAAAG 832
| | | | | | || ||| ||| | ||||||| |||| |||||||||||| ||||
Sbjct 761 C--AGTGAGGG-TAACTA--TTT-GGTTC-TTACGTCATTGACTTTCAAAACATCAAAAG 813
Query 833 GTAGAATATCTCCCACATATGGGGTTGTGTC-T-GGTACCAAATTTGTGCTGGAGAGCCA 890
| ||||| |||| |||| ||| ||| ||| | || ||||| |||||| ||||||| |
Sbjct 814 GAAGAATCTCTCAGACATTTGGA-TTG-GTCATTGGAACCAAGTTTGTGTTGGAGAGTAA 871
Query 891 AGGTAATGCAATTGTCGGATTCTATGGGAGAAATGGTGG-TGCTTTCGATGCTATTGGGG 949
|||||||| |||||||| ||| |||| || ||||||| | |||| |||||||| || |
Sbjct 872 AGGTAATGTTATTGTCGGGTTCCATGGAAGGGATGGTGGAT-CTTTTGATGCTATCGGAG 930
Query 950 TTTATTTCTCTCC 962
|||||||||||||
Sbjct 931 TTTATTTCTCTCC 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5