BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52070.1 Length=1224 Score E Sequences producing significant alignments: (Bits) Value Ahg474325 jgi|Araly1|474325|fgenesh2_kg.1__4279__AT1G52070.1 1487 0.0 Ahg314552 jgi|Araly1|314552|fgenesh1_pm.C_scaffold_1003332 950 0.0 > Ahg474325 jgi|Araly1|474325|fgenesh2_kg.1__4279__AT1G52070.1 Length=1145 Score = 1487 bits (805), Expect = 0.0 Identities = 949/1019 (93%), Gaps = 8/1019 (1%) Strand=Plus/Plus Query 4 AATCACCACAGCACAGCGATCATGGTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 63 |||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2 AATCGCCACAAAACAACGATCATGTTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 61 Query 64 ATTATAGATTCAACTGGGTTGGCAAAGGCCCAAAAGTTGGATGCAATTGGTGGGAAGGGA 123 ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 62 ATTATAGATTCAAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGCAATCGGTGGGAAGGGG 121 Query 124 GGCAAGCAGTGGGACGATGGA-GCTGACCATGACAATGTAGCAAAGGTTTATATAAGAGG 182 || ||||||||||| |||||| || |||||||||||||||||||| |||||||||||||| Sbjct 122 GGGAAGCAGTGGGATGATGGAGGC-GACCATGACAATGTAGCAAAAGTTTATATAAGAGG 180 Query 183 TGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGA 242 |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| Sbjct 181 TGGTCTTGAAGGCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGA 240 Query 243 TGCATCTATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCA 302 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGGATCCATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCT 300 Query 303 AAACAGTGAATATATTGTATCTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGC 362 ||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 301 AAATAGTGAATATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGC 360 Query 363 ACTTGAATTCAAAACCAACCTGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTAC 422 |||||||||||||||||| || |||||||||||| ||||||| ||||| ||||||||||| Sbjct 361 ACTTGAATTCAAAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTAC 420 Query 423 AAAGTTTTCACTCGGTGGAGTCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGG 482 ||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| Sbjct 421 AAAATTTTCACTCGGAGGAGTCAATGGCAAAATGATGATTGGCTTCCATGGATCCGCTGG 480 Query 483 GAAAGTCCTAAACTCCATTGGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACT 542 ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 481 GAAAGCCCTAAACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACT 540 Query 543 TGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGGCTC-TAATTATGATGGCGTGA 601 |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct 541 CGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGG-TCCTAATAATGATGGCGTGA 599 Query 602 AAAAGATATCTGTCACTTACATTAGCACTCTTATAAGGAGTATCAATGTGGACTATGAAA 661 ||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||| Sbjct 600 AAAAGATATCTGTTACTTACACTACCACTCTTATAAGGAGTATCAATGTTGACTATGAAA 659 Query 662 AGGACGGCCAAGTTGTAACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTG 721 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 660 AGGACGGCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTG 719 Query 722 TGATAGACTATCCAAATGAGTATTTGATATCAGTGGAGGGAACCTACAACATACTCCCCG 781 || |||||||||||||||| |||||||||||||||||||| || ||||||| | |||| | Sbjct 720 TGGTAGACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCCTG 779 Query 782 ATGATAACGTTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTC 841 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 780 ATGATAACGTTTTGGTCATTAGATCGTTGATCTTCAAAACATCAAAAGGGAGAATCTCTC 839 Query 842 CCACATATGGGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 901 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 840 CCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 899 Query 902 TTGGATT-CTATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCCA 960 ||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 900 TTGGATTTC-ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTCCG 958 Query 961 ATTCCTTCGTAATTCGAGACTATAAAGGCTATAAAACCATATG-GTTAGATGGAAATAT 1018 ||||||||||||||| | ||||||| | ||||||||||||| | ||| ||||||||||| Sbjct 959 ATTCCTTCGTAATTCAAAACTATAATGACTATAAAACCATA-GAGTTCGATGGAAATAT 1016 > Ahg314552 jgi|Araly1|314552|fgenesh1_pm.C_scaffold_1003332 Length=945 Score = 950 bits (514), Expect = 0.0 Identities = 809/949 (85%), Gaps = 30/949 (3%) Strand=Plus/Plus Query 28 GTT-ATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTCA-ACTGGGTTGG 85 ||| ||||||||| ||||||| |||||||||||||||||||| |||||| | |||||| | Sbjct 3 GTTAATCATCTATGTATTTCTCTTTCTCTCCTCAGCCATTATTGATTCAGA-TGGGTTTG 61 Query 86 CAAAGGCCCAAAAGTTGGATGC-AATTGGTGGG-AAGGGAGGCAAGCAGTGGGACGATGG 143 ||| ||| ||||||||||| || || |||||| ||||| |||||| | ||||| ||||| Sbjct 62 CAATGGCTCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGG-GGCAAGGAATGGGATGATGG 119 Query 144 AG-CTGACCATGACAATGTAGCAAAGGTTTATATAAGAGGTGGTCTTGAAGGCATACAAT 202 || | | |||||| ||||||||||| ||||||||| |||||||||||||||||||| | Sbjct 120 AGCCAG-CCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATATTGT 178 Query 203 ACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGATGCATCTATCCATGGTGTTT 262 ||||||||||||| ||||||||||||||| || || |||| | ||| ||||||||||||| Sbjct 179 ACATCAAATTTGAATATGTCAAAGATGGACAATCTGTAGAGGGATCAATCCATGGTGTTT 238 Query 263 CGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCAAAACAGTGAATATATTGTAT 322 |||||| ||||||||||| | ||| ||||||||||| | ||||| |||| ||||||| | Sbjct 239 TGGGTAGTGGTTTCACACATATGTTCGAGATTGATTACCTAAACAATGAACATATTGTCT 298 Query 323 CTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGCACTTGAATTCAAAACCAACC 382 ||||||| || |||||||||||||| ||| ||||||||| ||||||||||||||||||| Sbjct 299 CTGTTGACGGTTACTACGACAAATCAGGTGTGATGCAAGCGCTTGAATTCAAAACCAACC 358 Query 383 TGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTACAAAGTTTTCACTCGGTGGAG 442 |||||| |||||||||||||||||||||||||||| || |||||||||||| ||||| | Sbjct 359 GGAAGACCTCTGAAGTGATTGGATATCCAAAGGGTAATAAAAAGTTTTCACTTGGTGGGG 418 Query 443 TCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGGGAAAGTC-CTAAACTCCATT 501 |||| || |||||| | | |||||||||||||| || ||||||| | ||||| |||||| Sbjct 419 TCAACGGGAAGATGATCACCGGCTTCCATGGATCCGCAGGGAAAG-CTCTAAATTCCATT 477 Query 502 GGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACTTGTAGGTGGTCTAACCGGA 561 |||||||||||||||| || |||||||||||||||| |||| ||||||||| | || Sbjct 478 GGAGCATATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT-T--GGGGC 534 Query 562 GGCGAA-CCTTGGGATGATGGCT-CTAATTATGATGGCGTGAA-AAAGATATCTGTCACT 618 |||||| | ||||||||||| | |||||||||| ||||| || |||| | | | | ||| Sbjct 535 GGCGAATAC-TGGGATGATGG-TCCTAATTATGACGGCGT-AAGAAAGGTGTATATTACT 591 Query 619 TACATTAGCACTCT-TATAAGGAGTATCAATGTGGACTATGAAAAGGACGGCCAAGTTGT 677 |||||||||||| | |||| |||||||||| | ||||| ||||| ||||| |||||||| Sbjct 592 TACATTAGCACT-TGTATACGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGT 650 Query 678 AACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTGTGATAGACTATCCAAA 737 ||| ||| |||||||| ||| ||||||| ||||||||||||| | ||||||||||||| Sbjct 651 GACAAGTTCCCACGGGAACAAGGATGGAGAGACAGAGGAGTTTGCGGTAGACTATCCAAA 710 Query 738 TGAGTATTTGATATCAGTGGAGGG-A---AC--CTACAA-CATACTCCCCGATGATAACG 790 ||| | |||||||||||||||||| | || || ||| | || |||||||| || ||| Sbjct 711 TGAATCTTTGATATCAGTGGAGGGTACGTACGACT-CAATCCTATTCCCCGATCATTACG 769 Query 791 TTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTCCCACATATG 850 |||||||||||| |||||||| |||||||||||| |||||||| || || |||||||||| Sbjct 770 TTTTGGTCATTACGTCGTTGAGTTTCAAAACATCTAAAGGGAGGATATCACCCACATATG 829 Query 851 GGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTGTTGGATTCT 910 || ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 830 GGGTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCGATTGTCGGATTCC 889 Query 911 ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCC 959 ||||| | |||||||||||||||| ||||| || ||||| |||||||| Sbjct 890 ATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTCC 938 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45709377483 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5