BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52070.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474325 jgi|Araly1|474325|fgenesh2_kg.1__4279__AT1G52070.1 1487 0.0
Ahg314552 jgi|Araly1|314552|fgenesh1_pm.C_scaffold_1003332 950 0.0
> Ahg474325 jgi|Araly1|474325|fgenesh2_kg.1__4279__AT1G52070.1
Length=1145
Score = 1487 bits (805), Expect = 0.0
Identities = 949/1019 (93%), Gaps = 8/1019 (1%)
Strand=Plus/Plus
Query 4 AATCACCACAGCACAGCGATCATGGTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 63
|||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2 AATCGCCACAAAACAACGATCATGTTTATCATCTATATATTTCTTTTTCTCTCCTCAGCC 61
Query 64 ATTATAGATTCAACTGGGTTGGCAAAGGCCCAAAAGTTGGATGCAATTGGTGGGAAGGGA 123
||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 62 ATTATAGATTCAAATGGGTTTGCAAAGGCCCAAAAGTTGGAAGCAATCGGTGGGAAGGGG 121
Query 124 GGCAAGCAGTGGGACGATGGA-GCTGACCATGACAATGTAGCAAAGGTTTATATAAGAGG 182
|| ||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 122 GGGAAGCAGTGGGATGATGGAGGC-GACCATGACAATGTAGCAAAAGTTTATATAAGAGG 180
Query 183 TGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGA 242
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 181 TGGTCTTGAAGGCATACAATACATCAAATTTGATTACGTCAAAGATGGACAATCTATAGA 240
Query 243 TGCATCTATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCA 302
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGATCCATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCT 300
Query 303 AAACAGTGAATATATTGTATCTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGC 362
||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 301 AAATAGTGAATATATTGTATCTCTTGATGGCTACTACGACAAAACTGGTGTGATGCAAGC 360
Query 363 ACTTGAATTCAAAACCAACCTGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTAC 422
|||||||||||||||||| || |||||||||||| ||||||| ||||| |||||||||||
Sbjct 361 ACTTGAATTCAAAACCAATCTCAAGACTTCTGAATTGATTGGGTATCCTAAGGGTACTAC 420
Query 423 AAAGTTTTCACTCGGTGGAGTCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGG 482
||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 421 AAAATTTTCACTCGGAGGAGTCAATGGCAAAATGATGATTGGCTTCCATGGATCCGCTGG 480
Query 483 GAAAGTCCTAAACTCCATTGGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACT 542
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GAAAGCCCTAAACTCCATTGGGGCATATTTAACAACAGCTCCTCCTACTAAGTCAGAACT 540
Query 543 TGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGGCTC-TAATTATGATGGCGTGA 601
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 541 CGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGG-TCCTAATAATGATGGCGTGA 599
Query 602 AAAAGATATCTGTCACTTACATTAGCACTCTTATAAGGAGTATCAATGTGGACTATGAAA 661
||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 600 AAAAGATATCTGTTACTTACACTACCACTCTTATAAGGAGTATCAATGTTGACTATGAAA 659
Query 662 AGGACGGCCAAGTTGTAACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTG 721
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 AGGACGGCCAAGTTGTAACACGTTACCATGGGATGAAGAATGGAGATACAGAGGAGTTTG 719
Query 722 TGATAGACTATCCAAATGAGTATTTGATATCAGTGGAGGGAACCTACAACATACTCCCCG 781
|| |||||||||||||||| |||||||||||||||||||| || ||||||| | |||| |
Sbjct 720 TGGTAGACTATCCAAATGAATATTTGATATCAGTGGAGGGTACATACAACACAATCCCTG 779
Query 782 ATGATAACGTTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTC 841
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 780 ATGATAACGTTTTGGTCATTAGATCGTTGATCTTCAAAACATCAAAAGGGAGAATCTCTC 839
Query 842 CCACATATGGGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 901
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCACATATGGGTTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTG 899
Query 902 TTGGATT-CTATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCCA 960
||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 900 TTGGATTTC-ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGGGTTTATTTCTCTCCG 958
Query 961 ATTCCTTCGTAATTCGAGACTATAAAGGCTATAAAACCATATG-GTTAGATGGAAATAT 1018
||||||||||||||| | ||||||| | ||||||||||||| | ||| |||||||||||
Sbjct 959 ATTCCTTCGTAATTCAAAACTATAATGACTATAAAACCATA-GAGTTCGATGGAAATAT 1016
> Ahg314552 jgi|Araly1|314552|fgenesh1_pm.C_scaffold_1003332
Length=945
Score = 950 bits (514), Expect = 0.0
Identities = 809/949 (85%), Gaps = 30/949 (3%)
Strand=Plus/Plus
Query 28 GTT-ATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTCA-ACTGGGTTGG 85
||| ||||||||| ||||||| |||||||||||||||||||| |||||| | |||||| |
Sbjct 3 GTTAATCATCTATGTATTTCTCTTTCTCTCCTCAGCCATTATTGATTCAGA-TGGGTTTG 61
Query 86 CAAAGGCCCAAAAGTTGGATGC-AATTGGTGGG-AAGGGAGGCAAGCAGTGGGACGATGG 143
||| ||| ||||||||||| || || |||||| ||||| |||||| | ||||| |||||
Sbjct 62 CAATGGCTCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGG-GGCAAGGAATGGGATGATGG 119
Query 144 AG-CTGACCATGACAATGTAGCAAAGGTTTATATAAGAGGTGGTCTTGAAGGCATACAAT 202
|| | | |||||| ||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 120 AGCCAG-CCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATATTGT 178
Query 203 ACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGATGCATCTATCCATGGTGTTT 262
||||||||||||| ||||||||||||||| || || |||| | ||| |||||||||||||
Sbjct 179 ACATCAAATTTGAATATGTCAAAGATGGACAATCTGTAGAGGGATCAATCCATGGTGTTT 238
Query 263 CGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCAAAACAGTGAATATATTGTAT 322
|||||| ||||||||||| | ||| ||||||||||| | ||||| |||| ||||||| |
Sbjct 239 TGGGTAGTGGTTTCACACATATGTTCGAGATTGATTACCTAAACAATGAACATATTGTCT 298
Query 323 CTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGCACTTGAATTCAAAACCAACC 382
||||||| || |||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 299 CTGTTGACGGTTACTACGACAAATCAGGTGTGATGCAAGCGCTTGAATTCAAAACCAACC 358
Query 383 TGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTACAAAGTTTTCACTCGGTGGAG 442
|||||| |||||||||||||||||||||||||||| || |||||||||||| ||||| |
Sbjct 359 GGAAGACCTCTGAAGTGATTGGATATCCAAAGGGTAATAAAAAGTTTTCACTTGGTGGGG 418
Query 443 TCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGGGAAAGTC-CTAAACTCCATT 501
|||| || |||||| | | |||||||||||||| || ||||||| | ||||| ||||||
Sbjct 419 TCAACGGGAAGATGATCACCGGCTTCCATGGATCCGCAGGGAAAG-CTCTAAATTCCATT 477
Query 502 GGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACTTGTAGGTGGTCTAACCGGA 561
|||||||||||||||| || |||||||||||||||| |||| ||||||||| | ||
Sbjct 478 GGAGCATATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT-T--GGGGC 534
Query 562 GGCGAA-CCTTGGGATGATGGCT-CTAATTATGATGGCGTGAA-AAAGATATCTGTCACT 618
|||||| | ||||||||||| | |||||||||| ||||| || |||| | | | | |||
Sbjct 535 GGCGAATAC-TGGGATGATGG-TCCTAATTATGACGGCGT-AAGAAAGGTGTATATTACT 591
Query 619 TACATTAGCACTCT-TATAAGGAGTATCAATGTGGACTATGAAAAGGACGGCCAAGTTGT 677
|||||||||||| | |||| |||||||||| | ||||| ||||| ||||| ||||||||
Sbjct 592 TACATTAGCACT-TGTATACGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGT 650
Query 678 AACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTGTGATAGACTATCCAAA 737
||| ||| |||||||| ||| ||||||| ||||||||||||| | |||||||||||||
Sbjct 651 GACAAGTTCCCACGGGAACAAGGATGGAGAGACAGAGGAGTTTGCGGTAGACTATCCAAA 710
Query 738 TGAGTATTTGATATCAGTGGAGGG-A---AC--CTACAA-CATACTCCCCGATGATAACG 790
||| | |||||||||||||||||| | || || ||| | || |||||||| || |||
Sbjct 711 TGAATCTTTGATATCAGTGGAGGGTACGTACGACT-CAATCCTATTCCCCGATCATTACG 769
Query 791 TTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTCCCACATATG 850
|||||||||||| |||||||| |||||||||||| |||||||| || || ||||||||||
Sbjct 770 TTTTGGTCATTACGTCGTTGAGTTTCAAAACATCTAAAGGGAGGATATCACCCACATATG 829
Query 851 GGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTGTTGGATTCT 910
|| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 830 GGGTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCGATTGTCGGATTCC 889
Query 911 ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCC 959
||||| | |||||||||||||||| ||||| || ||||| ||||||||
Sbjct 890 ATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTCC 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5