BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52080.1
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474326 jgi|Araly1|474326|fgenesh2_kg.1__4280__AT1G52080.1 2750 0.0
> Ahg474326 jgi|Araly1|474326|fgenesh2_kg.1__4280__AT1G52080.1
Length=2065
Score = 2750 bits (1489), Expect = 0.0
Identities = 1775/1912 (93%), Gaps = 23/1912 (1%)
Strand=Plus/Plus
Query 291 ATTTTTTCATGGCGTTTCTGATGGAGGTCGATGAAGAAGAAGAGATATGATTTAGTCGTT 350
||||||| |||||||||||||||||||| || ||||||||||||| ||||| ||||| ||
Sbjct 162 ATTTTTT-ATGGCGTTTCTGATGGAGGTTGACGAAGAAGAAGAGAGATGATCTAGTCTTT 220
Query 351 CTTCAAATTGAGAATCTTGGGGTGGTTGTTTTTTATTGGTAGTCATG---AT--T-ATTA 404
||||| ||||| ||| || ||| |||| ||||||||||||||| ||| || | ||||
Sbjct 221 CTTCAGATTGAAAAT-TTTGGG-GGTTTTTTTTTATTGGTAGTTATGAATATGATCATTA 278
Query 405 CCACACACAAAAGAGATATAAACTTGTTGGTGCTTCAATTAGGAGCAGCTCTTGCTGTAT 464
||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 279 CCAAACACAAAAGAGATATAAACTTGTTTGTGCTTCAACTAGGAGCAGCTCTTGCTGTAT 338
Query 465 CTTTTGCTGGATTTCTCTTTGCCCGATTTAGAAAGAATACAAAAAGAATTGGACCTACTT 524
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 339 CTTTTGCTGGATTTCTCTTTTCCCGATTTAGAAAGAAAACAAAAAGAATTGGACCTACTT 398
Query 525 TGCCTCCTCTTCCACCTCACTCTTCTGATAATGGATACAGAGACTATTCCAA-CAAATCC 583
|||||||||||| |||||| ||||||||||||||||||||||| | ||| || | |||||
Sbjct 399 TGCCTCCTCTTCGACCTCAATCTTCTGATAATGGATACAGAGATTGTTCTAATC-AATCC 457
Query 584 ATTGATAGACGAGATGAGGGCACGGAGAAGACGGATGAAGAGACTTTAATTGGTGTTTCG 643
||||||||| |||||| ||||||| |||| || ||||||||||||||||| ||| |||||
Sbjct 458 ATTGATAGAGGAGATGCGGGCACGCAGAATACTGATGAAGAGACTTTAATCGGTTTTTCG 517
Query 644 CCACGAAGGGAATGTGATCTTGATGAAAAAGATGTGTTTCTTTTACCGGAGTTTGAAGAG 703
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 518 CCACGAAGGGAATGTGATCTTGATGAAGAAGATGTGTTTCTTTTACCGGAGTTTGAAGAG 577
Query 704 GAAGCTAAAAAGTTAGATTTGTTGGTTTGTGATGACTGTGAAACACCGAGGTCAGATATA 763
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 578 GAAGCTAAAAAGTTAGATTTGTTGGTTTGTGATGAGTGTGAAACACCGAGGTCGGATATA 637
Query 764 ACTGCTCCTTTAGCATTTCCTAGCGAAGAGGAAGCTGATCATGAGAATGAGATTAACCGG 823
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 638 ACCGCTCCTTTAGCATTTCCGAGCGAAGAGGAAGCTGATTATGAGAATGAGATTAAGCGG 697
Query 824 TTGAGAAACACGGTGAGAGCGCTCCGTGAGAGAGAGAGGTGTCTTGAGGATAAGTTGTTA 883
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 698 TTGAGAAACACGGTGAGAGCGCTGCGTGAGAGAGAGAGATGTCTTGAGGATAAGTTGTTG 757
Query 884 GAATACTACAGCCTTAAGGAGCAGCAAAAGATTGCAATGGAACTGAGAAGTAGATTGAAG 943
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GAATACTACAGCCTCAAGGAGCAGCAAAAGATTGCAATGGAACTGAGAAGTAGATTGAAA 817
Query 944 CTAAACCAGATGGAGACTAAAGTTTTCAATTTTAAGATCAAGAAGTTGCAAGCAGAGAAC 1003
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 818 CTAAACCAGATGGAGACTAAAGTTTTCAATTTTAAGATCAAGTCGTTGCAAGCCGAGAAT 877
Query 1004 GAAAAACTTAAGGCTG-AATGTTTTGAGCATTCTAAAGTTTTGTTGGAGCTGGATATGGC 1062
|| || |||||||| | |||||| ||||||||| ||||||||||||||||| || | |||
Sbjct 878 GAGAAGCTTAAGGC-GCAATGTTCTGAGCATTCGAAAGTTTTGTTGGAGCTTGAAAAGGC 936
Query 1063 TAAGTCTCAGGTTCAAGTGCTTAAGAAGAAACTGAACATCAATACTCAACAACACGTAGC 1122
|| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 937 TATGTCAGAGGTTCAAGTGCTTAAGAAGAAACTGAACATCAATACCCAACAACACGTAGC 996
Query 1123 GCAGATCTTGTCGCTTAAACAACGAGTGGCGAGGCTGCAAGAAGAAGAAATCAAGGCTGT 1182
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 997 GCAGATCTTGTCACTTAAACAACGAGTGGCGAGGCTGCAAGAAGAAGAAATCAAGGATGT 1056
Query 1183 GTTACCTGATCTTGAAGCTGATAAGATGATGCAGAGGTTAAGGGATTTGGAAAGTGAGAT 1242
|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1057 TTTACCTGATCCGGAAGCTGATAAGATGATGCAGAGGTTAAGGGATTTGGAAGGGGAGAT 1116
Query 1243 CAACGAGCTTACGGATACTAACACGAGATTACAGTTTGAGAATTTTGAGCTTTCTGAGAA 1302
||||| |||||||||| | |||| |||||||||||||||||||||||| |||||||||||
Sbjct 1117 CAACGCGCTTACGGATTCCAACATGAGATTACAGTTTGAGAATTTTGAACTTTCTGAGAA 1176
Query 1303 GCTGGAGTCTGTTCAAATCATAGCAAATTCAAAACTGGAGGAACC---AGAGGAGATTGA 1359
||| ||||||||||||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 1177 GCTAGAGTCTGTTCAAATCATAGCAAATTCAAAGCTTGAGGACCCTGAAGAGGAGATTGA 1236
Query 1360 GACATTACGCGAAGATTGTAACCGATTGAGGAGTGAAAATGAAGAGTTAAAGAAGGATGT 1419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1237 GACATTACGCGAAGATGGTAACCGATTGAGGAGTGAAAATGAAGAGTTAAAGAAGGAAGT 1296
Query 1420 CGAGCAGCTTCAAGGG-GATCGATGTACTGACCTCGAGCAGCTCGTTTATCTCAGATGGA 1478
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1297 CGAGCAGCTTC-AGGGTGATCGATGCACTGACCTCGAGCAGCTCGTTTATCTCAGATGGA 1355
Query 1479 TAAATGCTTGCTTAAGATATGAGCTAAGGACTTACCAGCCTCCTGCT-GGTAAAACTGTT 1537
|||||||||||||||||||||||||| ||||||| |||||||| | | |||||||| |||
Sbjct 1356 TAAATGCTTGCTTAAGATATGAGCTACGGACTTATCAGCCTCCAG-TGGGTAAAACCGTT 1414
Query 1538 GCTAGGGATCTTAGTACTACTCTAAGTCCTACTTCAGAGGAGAAAGCAAAGCAACTGATC 1597
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 1415 GCTAGGGATCTTAGTACTACTCTAAGTCCTACTTCAGAAGAGAAAGCTAAGCAGCTTATC 1474
Query 1598 CTCGAATACGCACATAGCGAAGATAACACTGATTATGATCGATGGTCATCTTCGCAGGAA 1657
||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1475 CTCGAGTATGCACATAGTGAAGATAACACTGATTATGACCGATGGTCATCTTCGCAGGAA 1534
Query 1658 GAGTCATCAATGATCACTGACTCAATGTTTTTAGATGATTCTTCTGTTGACACTTTGTTT 1717
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1535 GAGTCATCAATGATCACTGACTCAATGTTTTTAGATGATTCTTCTGTCGACACTTTGTTT 1594
Query 1718 GCAACTAAAACAAAAAAGACAGGAAAGAAGAAGCTGATGCATAAGTTAATGAAGATCTTA 1777
|| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 GCGACGAAAACAAAAAAGTCAGGAAAGAAGAAGCTGATGCATAAGTTAATGAAGATCTTA 1654
Query 1778 CATGGTAAAGATACTAAAGACAGCAAGAAGAGAGCTGGTTCATCGGAACCGAGCAGCTCA 1837
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1655 CACGGTAAAGATACTCAAGACCGCAAGAAGAGAGCTGGTTCATCGGAACCGAGCAGCGCA 1714
Query 1838 AACACTGGTGTTCATTCAACTCCTAGGCAGCTTAGATCAACACATTCAATGGACTTCCAA 1897
||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1715 AACACGGGTGTTCATTCAACTCCTAGGAAGCTTAGAACAACGCATTCAATGGACTTCCAA 1774
Query 1898 ATGTTGATGCGTGGCAAAGACGAGGAAGAAGACTTCAAGAATCACATT-GTGATGCTGCG 1956
|||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1775 ATGTTGATGCGTGGGAAAGACGAGGAAGAAGACTTCAAGGATCACATCAG-GATGCTGCG 1833
Query 1957 TCGTAAGAGTGAAGCAGCAGGTTCTTCCACTTATGGAGAAGAACACTGTTTGGAAACAGA 2016
|| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1834 TCATAAGAGCGAAGCAGCGGGTTCTTCCACCTATGGAGAAGAACACTGTTTGGAATCAGA 1893
Query 2017 TCAAAACGGGAAGAAAGAGCTGATTAAATTAGCAGATGCGCTTACGAAATCTCGTTCTAC 2076
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1894 TCAAAACGGGAAGAAAGAGCTGATTAAATTCGCAGATGCGCTTACGAAATCTCGTTCGAC 1953
Query 2077 AAAGAAACTGCATAAGAAATCTGTGTCCTTCTTTTTCTGAAAGTAAGTAGAAACACT-AA 2135
|||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1954 AAAGAAGCTTCACAAGAAATCTGTGTCCTTCTTTTTCTGAAAGTAAGTAGAAACACTTAA 2013
Query 2136 CTTACTTGTTACTGTAACACGCATCGCCTAAAGCTACATGTATGTGTATATA 2187
||||||||| |||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 2014 CTTACTTGTAACTGTAACACGCATTGCCTAAAGCTACATATATGTGTGTATA 2065
Score = 147 bits (79), Expect = 5e-34
Identities = 123/141 (87%), Gaps = 15/141 (11%)
Strand=Plus/Plus
Query 22 TTCATCATTCTCTGTTCAATATTTCTCCAAGTCATCAAAATTCTCGCCGTCAAATCAAAT 81
|||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTCATCATCCTCTGTTCAAGATTTCTCCAAGTCATCAAAGTTCTCGCCGTCAAATCAAAT 60
Query 82 CATAAATCTCTGCTTCTCCAATTTGTTGAGAAACATCACATTCCGTGTTTGATCATCGGA 141
||||||| | || | | |||||||||||||||||||||||||||||||||
Sbjct 61 CATAAAT-T-TG----T---A------GAGAAACATCACATTCCGTGTTTGATCATCGGA 105
Query 142 CAATGAAATAAACCCACTCAA 162
|||||||||||||||||||||
Sbjct 106 CAATGAAATAAACCCACTCAA 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87340931785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5