BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52130.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923717 jgi|Araly1|923717|scaffold_104998.1 616 2e-175
> Ahg923717 jgi|Araly1|923717|scaffold_104998.1
Length=574
Score = 616 bits (333), Expect = 2e-175
Identities = 516/597 (86%), Gaps = 42/597 (7%)
Strand=Plus/Plus
Query 349 AAGTTTACGCTAGCAATGGAGGGCaaaaaa-aTCATTGGGTTTCACGGTTTTGCTGATGT 407
||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||||||
Sbjct 6 AAGTTTAAGCTAGCAATGGACGG-AAAAAACATCATTGGGTTTCACGGTTCTGCTGATGC 64
Query 408 TAACCTCAGAGCTCTTGGAGCATATGTTACTTGGATAACTCCTGCAAGAATGGAAGCCAA 467
||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 65 TAACCTCAGAGTTCTTGGAGCATATTTTACTTCGATTACTCCTGCAAGAATGGAAGCCAA 124
Query 468 AGGGGGCAAAGGAGGCAATGAATGGGATGATGGAGGTGACTATGAGGCTGTAACAAAGAT 527
||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 125 AGGGGACAAAGGAGGCAGGGAATGGGATGATGGAGGAGTTTATGAGGCTGTAACAAAGAT 184
Query 528 TCATGGACGAAGTGATCATAAAGGTATAAAAGACATCATATTCGATTATGTTGACAAGGA 587
||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 185 TCATGGACGAAGTGATCATAACGGCATAAAAGACATCACATTCGATTATGTTGACAAGGA 244
Query 588 TGGGCATCCCAAA-AGTGAAACCCATGGTCCTACCTCGGGTCAGGGTTACGTACTTGAGC 646
| | ||||||||| | ||||||||||||| ||||||||| | || | | ||
Sbjct 245 TCG-CATCCCAAAGA-TGAAACCCATGGTTCTACCTCGG-T-----TT--G-A---GA-- 288
Query 647 CGTTTGAGATTAACCATCTCGACAAGGAATATCTGATGTCTATTGATGGTTACTATGATG 706
|| | | |||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 289 --TT--A-A----CCATATCGACAAGGAATATCTGCTGTCTATCGATGGTTACTATGATG 339
Query 707 ATG-CATCCGGTGTCATTCAAGCACTGCAATTCAAAACCAACATGAAGACTTCGGAACTT 765
| | |||| |||||||||||||||||||||||||| |||||||||||| ||| || ||||
Sbjct 340 A-GACATCAGGTGTCATTCAAGCACTGCAATTCAATACCAACATGAAGCCTTGGGCACTT 398
Query 766 ATGGGCTACTATGACGATGATGCTGTGAAGTTTACAATTGGATGCACTGTTAATAAGATC 825
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 399 ATGGGCTACTATGAAGATGATGCTGTGAAGTTTACAATTGGATGCAATGGTAATAAGATC 458
Query 826 ATTGGGTTTCAT------GGACATGCTG-GCAAGAACCTATATTCTCTCGGAGCATATTT 878
|||||||||||| ||| | |||| | ||||||||| | ||||| |||||||||||
Sbjct 459 ATTGGGTTTCATTTTCATGGATACGCTGAG-AAGAACCTAAACTCTCTTGGAGCATATTT 517
Query 879 CACAACACTTCCTC--TAACTAAATTGGAATACGA-AGATAGTTTTCGTGAAAAGCT 932
||||| |||||||| || |||||||||||||| | |||||||||||||| |||||
Sbjct 518 CACAATACTTCCTCGCTACCTAAATTGGAATAC-ATAGATAGTTTTCGTGGTAAGCT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5