BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52140.1

Length=891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923719 jgi|Araly1|923719|scaffold_105000.1                       1088    0.0  


> Ahg923719 jgi|Araly1|923719|scaffold_105000.1
Length=667

 Score = 1088 bits (589),  Expect = 0.0
 Identities = 641/667 (96%), Gaps = 0/667 (0%)
 Strand=Plus/Plus

Query  50   tctctctaaaaaatctTGATATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACA  109
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCTCTCTAAAAAATCTCGATATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACA  60

Query  110  TCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTG  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTG  120

Query  170  ACTTCAACGCCACTCTCAAACGTGGCAAGAACCTCATGTTCCACCAACGTCGTCGTGTCC  229
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  121  ACTTCAACGCCACTCTCAAACGTGGCAAGAATCTCATGTTCCACCACCGTCGTCGTGTCC  180

Query  230  ACGCCGGTTCCACCGCCTCAGCCGCTCTAAACGCTACTTCAGCCACCGCGTCATCGCGAC  289
            |||||||||||||| ||||||  |||||||||||| ||||||||||||||||||| ||||
Sbjct  181  ACGCCGGTTCCACCTCCTCAGATGCTCTAAACGCTGCTTCAGCCACCGCGTCATCACGAC  240

Query  290  AAGAGTACGAGTTTAGCTGCAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGG  349
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGAATACGAGTTTAGCTGTAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGG  300

Query  350  CTTTCATGAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGC  409
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTTTCATTAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGC  360

Query  410  TTGACGACGACGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAACGGCGTTGGAGAGA  469
            |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  361  TTGACGACGATGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAATGGCGTTGGAGACA  420

Query  470  AAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTATTTCCCCGGTTTTG  529
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  421  AAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTACTTCCCCGGGTTTG  480

Query  530  GACAGACTCCATTGGTTAGACCGTTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGG  589
            ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  481  GACGGACTCCATTGGTTAGACCGCTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGG  540

Query  590  AAAATGGTGATGTGGCTAATGGACACGTTGACAAAGCAGCTGATGATTTTATAAAGAAGT  649
            |||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct  541  AAAACGGTGACGTGGCTAATAGACACGTGGACAAAGCAGCTGATGATTTTATAAAGAAGT  600

Query  650  TTTATAAGAACTTGAATCAGCAGaaaaaaaTGATTGAGTTCAGCTAAATATTAATCCGAA  709
            |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||
Sbjct  601  TTTATAAGAACTTGAATCAGCAGAAAAAGATGATTCAGTTCAGCTAAATATTAATCTGAA  660

Query  710  TTGTGTG  716
            | |||||
Sbjct  661  TCGTGTG  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33014446122


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5