BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52155.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474331 jgi|Araly1|474331|fgenesh2_kg.1__4285__AT1G52155.1 1375 0.0
Ahg923721 jgi|Araly1|923721|scaffold_105002.1 309 3e-83
> Ahg474331 jgi|Araly1|474331|fgenesh2_kg.1__4285__AT1G52155.1
Length=954
Score = 1375 bits (744), Expect = 0.0
Identities = 890/958 (93%), Gaps = 19/958 (2%)
Strand=Plus/Plus
Query 253 ATGTCTTTTGGTGTATATGTGACTGGTGTTCTGTTTCAGACAGCTTCATTTGTGTCTTTT 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTTTGGTGTATATGTGACTGGTGTTCTGTTTCAGACAGCTTCATTTGTGTCTTTT 60
Query 313 TTACTTATCTCTCACGGTTATTGCATCACTTGTGAACGGCTCTCGTTGACCGAACGTAGA 372
||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 61 TTACTCATCTCTCATGGTTATTGCATCACTTGTGAACGGCTCTCATTGACTGAACGCAGA 120
Query 373 ACTACAGCTTCACTTGGTTGTGTCTTTTATTTGACTCTTGTTGGATACAGAGCTTCTGTT 432
|| || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 121 ACCACTGCTTCACTTGGTTGTGTTTTTTACTTGACGCTTGTTGGATACAGAGCTTCTGTT 180
Query 433 CCTTATTTTGCAGTGCTTCTGATACTTAACTACATGATCTCATTCTATGTTATATTCCAT 492
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTTATTTTGCTGTGCTTCTGATACTTAACTACATGATCTCATTCTATGTTATATTCCAC 240
Query 493 CACATATCGCAAAATCTAGCGGTGTTACGAGAACAGCTGAGTTTTATCGAAGATGAGAAT 552
|||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 241 CACATATCGCAAAACCTAGCGGTCTTACGAGAACAGCTAAGTTTTATCGAGGATGAGAAT 300
Query 553 GTTCAAGCTATGCATGATGCTGTATATGCTAAATACATCATGTTCAAAAAATTCCAAGGA 612
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 301 GTTCAAGCTATGCATGATGCTGTCTATGCTAAATATATTATGTTCAAAAAATTCCAAGGA 360
Query 613 GCTATGCAGATTGTAGCAATGGCAGAAACTGTGATCTACATGAACATGGATAACTCCTCA 672
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 361 GCTATGCAGATTGTAGCAATGGCAGAAACTGTGATTTATATGAACATGGATAACTCCTCG 420
Query 673 CAAAACTATTGGCTCAGGCTACTAATTCGAGAATGGGCTCAGTTCTGCATTTTTCTCTAT 732
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAACTATTGGCTCCGGCTACTAATTCGAGAATGGGCTCAGTTCTGCATTTTTCTCTAT 480
Query 733 ATTGGTTGGACTTTCAGGTCTCAGGATATGGCACCGCGTTTCTCGGTAATGCCTACACTA 792
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATTGGTTGGACTTTCAGGTCTCAGGACATGGCACCGCGTTTCTCGGTAATGCCTACACTA 540
Query 793 AAACCGAAAGAGAATACAATTATTCCTCCGATTTATAGCATGGAAATGGACGCAAAATCT 852
||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 AAACCTAAAGAGAATACAGTTATTCCTCCGATTTATAGCATGGACATGGACGCAAAATCT 600
Query 853 TTCAAAGAATTCAGAAGTCAAGAATGGAACATCGGAGTGCCAATGCCATATTCAAACTAC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCAAAGAATTCAGAAGTCAAGAATGGAACATCGGAGTGCCAATGCCATATTCAAACTAC 660
Query 913 GAAAAGCAAAAAGATTCAGTTCTAGTGATAATTCAGCATCCGCGATAGCATTTAGAGAGA 972
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 GAAAAGCAAAAAGATTCAGTTCTAGTGATAATTCAGCATCCGCGATAGCATTCAGAGAGA 720
Query 973 AGCA-AAAGATACAATGTTTTCCTCTATCCATCTTCCTAAAGAGAGTGAAAGATCACCAA 1031
|| ||| |||||| | || ||||| |||||||||||| ||||||||||||||||||
Sbjct 721 CGCGGAAA-ATACAACGCTT-CCTCTTTCCATCTTCCTATTTAGAGTGAAAGATCACCAA 778
Query 1032 AATTGACAAAGTTTCTCTCTGATTAAGACAAGATGCTTCCTCAGCAACTACCTT-TCTCT 1090
|| ||| ||| |||||| ||||||||||||||||||||||||||||||| || || ||
Sbjct 779 AAACGACTAAGCGTCTCTCCGATTAAGACAAGATGCTTCCTCAGCAACTACTTTGTCCCT 838
Query 1091 CTTTCCATTTACATTTTG-GGGTTTCTTATCTTATAGAGGAATAAAA-TT--T------G 1140
|||||| ||| ||||| |||||||||||||||||||||||||||| || | |
Sbjct 839 CTTTCC-TTTGG-TTTTGCGGGTTTCTTATCTTATAGAGGAATAAAAGTTGATTTTAATG 896
Query 1141 TATAGATGCAAAAACTAGTTCTAGTATAA-T--GCTTCAAATGAAAATGTAAACACAA 1195
|||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||
Sbjct 897 TATAGATGCAAAAATTAGTTCTAGTATAAATATGCTTCAAATGAAAATGTACACACAA 954
> Ahg923721 jgi|Araly1|923721|scaffold_105002.1
Length=223
Score = 309 bits (167), Expect = 3e-83
Identities = 192/203 (95%), Gaps = 5/203 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCTCAGGGCATCAATGGCGTCGATGATTCATATCGTCATCTCCCAATTCTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGGAAGAATCTCAGGGCATCAATGGCGTCGATGATTCATATCGTCATCTTCCAATTCTC 80
Query 61 TACTTAACCTTTTTAACGATCTGGTCTTTCTCCGCTTGTTCTTGGACGGTTAACACTTTC 120
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 81 TACTTAACTTTTTTAACGATCTGGTCTTTCTCCGCTTGTTCTTGGACAGTTAACACTTTC 140
Query 121 AAAAATCGCCACTTTCAGA-CA-A-A--TAGTTTACAATGGACTCTTGCTTCAGTTCCAT 175
|||||||| |||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct 141 AAAAATCGACACTTTCAGAGCAGACAAATAGTTTACAATGGACTCTTGCTTCAGTTCCAT 200
Query 176 TAATCAAAGCCTTACAGCTCACA 198
|||||||||| |||||||| |||
Sbjct 201 TAATCAAAGCATTACAGCTTACA 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5