BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52155.1 Length=1222 Score E Sequences producing significant alignments: (Bits) Value Ahg474331 jgi|Araly1|474331|fgenesh2_kg.1__4285__AT1G52155.1 1375 0.0 Ahg923721 jgi|Araly1|923721|scaffold_105002.1 309 3e-83 > Ahg474331 jgi|Araly1|474331|fgenesh2_kg.1__4285__AT1G52155.1 Length=954 Score = 1375 bits (744), Expect = 0.0 Identities = 890/958 (93%), Gaps = 19/958 (2%) Strand=Plus/Plus Query 253 ATGTCTTTTGGTGTATATGTGACTGGTGTTCTGTTTCAGACAGCTTCATTTGTGTCTTTT 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTTTGGTGTATATGTGACTGGTGTTCTGTTTCAGACAGCTTCATTTGTGTCTTTT 60 Query 313 TTACTTATCTCTCACGGTTATTGCATCACTTGTGAACGGCTCTCGTTGACCGAACGTAGA 372 ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 61 TTACTCATCTCTCATGGTTATTGCATCACTTGTGAACGGCTCTCATTGACTGAACGCAGA 120 Query 373 ACTACAGCTTCACTTGGTTGTGTCTTTTATTTGACTCTTGTTGGATACAGAGCTTCTGTT 432 || || ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 121 ACCACTGCTTCACTTGGTTGTGTTTTTTACTTGACGCTTGTTGGATACAGAGCTTCTGTT 180 Query 433 CCTTATTTTGCAGTGCTTCTGATACTTAACTACATGATCTCATTCTATGTTATATTCCAT 492 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCTTATTTTGCTGTGCTTCTGATACTTAACTACATGATCTCATTCTATGTTATATTCCAC 240 Query 493 CACATATCGCAAAATCTAGCGGTGTTACGAGAACAGCTGAGTTTTATCGAAGATGAGAAT 552 |||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 241 CACATATCGCAAAACCTAGCGGTCTTACGAGAACAGCTAAGTTTTATCGAGGATGAGAAT 300 Query 553 GTTCAAGCTATGCATGATGCTGTATATGCTAAATACATCATGTTCAAAAAATTCCAAGGA 612 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 301 GTTCAAGCTATGCATGATGCTGTCTATGCTAAATATATTATGTTCAAAAAATTCCAAGGA 360 Query 613 GCTATGCAGATTGTAGCAATGGCAGAAACTGTGATCTACATGAACATGGATAACTCCTCA 672 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 361 GCTATGCAGATTGTAGCAATGGCAGAAACTGTGATTTATATGAACATGGATAACTCCTCG 420 Query 673 CAAAACTATTGGCTCAGGCTACTAATTCGAGAATGGGCTCAGTTCTGCATTTTTCTCTAT 732 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CAGAACTATTGGCTCCGGCTACTAATTCGAGAATGGGCTCAGTTCTGCATTTTTCTCTAT 480 Query 733 ATTGGTTGGACTTTCAGGTCTCAGGATATGGCACCGCGTTTCTCGGTAATGCCTACACTA 792 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 ATTGGTTGGACTTTCAGGTCTCAGGACATGGCACCGCGTTTCTCGGTAATGCCTACACTA 540 Query 793 AAACCGAAAGAGAATACAATTATTCCTCCGATTTATAGCATGGAAATGGACGCAAAATCT 852 ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 541 AAACCTAAAGAGAATACAGTTATTCCTCCGATTTATAGCATGGACATGGACGCAAAATCT 600 Query 853 TTCAAAGAATTCAGAAGTCAAGAATGGAACATCGGAGTGCCAATGCCATATTCAAACTAC 912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTCAAAGAATTCAGAAGTCAAGAATGGAACATCGGAGTGCCAATGCCATATTCAAACTAC 660 Query 913 GAAAAGCAAAAAGATTCAGTTCTAGTGATAATTCAGCATCCGCGATAGCATTTAGAGAGA 972 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 661 GAAAAGCAAAAAGATTCAGTTCTAGTGATAATTCAGCATCCGCGATAGCATTCAGAGAGA 720 Query 973 AGCA-AAAGATACAATGTTTTCCTCTATCCATCTTCCTAAAGAGAGTGAAAGATCACCAA 1031 || ||| |||||| | || ||||| |||||||||||| |||||||||||||||||| Sbjct 721 CGCGGAAA-ATACAACGCTT-CCTCTTTCCATCTTCCTATTTAGAGTGAAAGATCACCAA 778 Query 1032 AATTGACAAAGTTTCTCTCTGATTAAGACAAGATGCTTCCTCAGCAACTACCTT-TCTCT 1090 || ||| ||| |||||| ||||||||||||||||||||||||||||||| || || || Sbjct 779 AAACGACTAAGCGTCTCTCCGATTAAGACAAGATGCTTCCTCAGCAACTACTTTGTCCCT 838 Query 1091 CTTTCCATTTACATTTTG-GGGTTTCTTATCTTATAGAGGAATAAAA-TT--T------G 1140 |||||| ||| ||||| |||||||||||||||||||||||||||| || | | Sbjct 839 CTTTCC-TTTGG-TTTTGCGGGTTTCTTATCTTATAGAGGAATAAAAGTTGATTTTAATG 896 Query 1141 TATAGATGCAAAAACTAGTTCTAGTATAA-T--GCTTCAAATGAAAATGTAAACACAA 1195 |||||||||||||| |||||||||||||| | |||||||||||||||||| |||||| Sbjct 897 TATAGATGCAAAAATTAGTTCTAGTATAAATATGCTTCAAATGAAAATGTACACACAA 954 > Ahg923721 jgi|Araly1|923721|scaffold_105002.1 Length=223 Score = 309 bits (167), Expect = 3e-83 Identities = 192/203 (95%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 1 ATGGAAGAATCTCAGGGCATCAATGGCGTCGATGATTCATATCGTCATCTCCCAATTCTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 21 ATGGAAGAATCTCAGGGCATCAATGGCGTCGATGATTCATATCGTCATCTTCCAATTCTC 80 Query 61 TACTTAACCTTTTTAACGATCTGGTCTTTCTCCGCTTGTTCTTGGACGGTTAACACTTTC 120 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 81 TACTTAACTTTTTTAACGATCTGGTCTTTCTCCGCTTGTTCTTGGACAGTTAACACTTTC 140 Query 121 AAAAATCGCCACTTTCAGA-CA-A-A--TAGTTTACAATGGACTCTTGCTTCAGTTCCAT 175 |||||||| |||||||||| || | | |||||||||||||||||||||||||||||||| Sbjct 141 AAAAATCGACACTTTCAGAGCAGACAAATAGTTTACAATGGACTCTTGCTTCAGTTCCAT 200 Query 176 TAATCAAAGCCTTACAGCTCACA 198 |||||||||| |||||||| ||| Sbjct 201 TAATCAAAGCATTACAGCTTACA 223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45633131649 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5