BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52160.1
Length=2889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474332 jgi|Araly1|474332|fgenesh2_kg.1__4286__AT1G52160.1 3984 0.0
Ahg341756 jgi|Araly1|341756|fgenesh1_pg.C_scaffold_3001519 1007 0.0
> Ahg474332 jgi|Araly1|474332|fgenesh2_kg.1__4286__AT1G52160.1
Length=2722
Score = 3984 bits (2157), Expect = 0.0
Identities = 2508/2675 (94%), Gaps = 34/2675 (1%)
Strand=Plus/Plus
Query 5 CTCCAGAG-GGAGAGAGATGATAAACTCAATGCCCTATTTACACAAAAACCTACGccttc 63
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCAGAGAGG-CAGAGATGATAAACTCAATGCCCTATTTACACAAAAACCTACGCCTTC 59
Query 64 ttcgtctcctctcttcaaagtcttctcctttccctctttctctcagacccttttctccac 123
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TTCTTCTCCTCTCTTCAAAGTCTTCTTCTTTCCCTCTTTCTCTCAGACCCTTTTCTCCAC 119
Query 124 gatccttctctctctcaaccctcttctcttcttcttcATCATCGTCTTCAATGGAGAACA 183
||||||||||||||||||||||| | || ||||||||||| | ||||||||||||||||
Sbjct 120 GATCCTTCTCTCTCTCAACCCTC-T-TC-TCTTCTTCATC--C-TCTTCAATGGAGAACA 173
Query 184 ACGAAGCAACTAATGGCT-CCAAGTCTTCTTCTAATTCATTCGTGTTCAATAAGCGAAGA 242
||||| | |||||||| | |||||||||||||| ||| || | || ||||||||||||
Sbjct 174 ACGAATCTACTAATGG-TACCAAGTCTTCTTCT--TTC-GTC-T-TT-AATAAGCGAAGA 226
Query 243 GCTGAAGGATTTGACATAACCGATAAGaaaaaaaGGAATCTAGAACGCAAATCCCAAAAG 302
||||||||| |||| | |||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 227 GCTGAAGGAATTGATAAAACCGATAAGAAAAAAAGAAATCTTGAACGCAAAACCCAAAAG 286
Query 303 CTTAATCCCACTAACACTATTGCTTACGCACAGATACTTGGAACTGGAATGGATACACAG 362
||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 287 CTTAATCCCTCTAACACTATTGCTTACGCACAGATTCTTGGAACGGGAATGGATACTCAG 346
Query 363 GATACATCATCTTCTGTATTACTCTTCTTTGATAAGCAAAGATTCATCTTTAATGCTGGA 422
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 347 GATACATCATCTTCTGTATTACTCTTCTTTGACAAACAAAGATTCATTTTTAATGCTGGA 406
Query 423 GAGGGCTTGCAACGTTTTTGTACAGAACATAAGATTAAACTATCAAAGATAGATCATGTA 482
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 407 GAGGGCTTGCAACGTTTTTGTACAGAGCATAAGATTAAACTATCAAAGATAGATCATGTG 466
Query 483 TTTTTGTCTCGTGTTTGCTCAGAGACAGCAGGAGGACTTCCAGGTCTTCTACTAACTCTA 542
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 467 TTTTTGTCTCGTGTCTGCTCAGAGACAGCAGGAGGACTTCCAGGTCTTTTACTAACTCTT 526
Query 543 GCTGGTATTGGTGAAGAAGGGCTTTCGGTGAATGTATGGGGTCCTTCGGATCTTAACTAT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GCTGGTATTGGTGAAGAAGGGCTTTCGGTGAATGTATGGGGTCCTTCGGATCTTAACTAT 586
Query 603 TTAGTTGATGCAATGAAGTCGTTTATTCCACGGGCAGCTATGGTTCATACACGGAGTTTT 662
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 587 TTAGTTGATGCAATGAAGTCGTTTATTCCACGGGCGGCTATGGTTCATACTCGGAGTTTT 646
Query 663 GGTCCCTCGAGTACTCCTGATCCTATTGTTCTTGTGAATGATGAAGTTGTGAAAATATCC 722
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 647 GGTCCCTCGAGTACACCTGATCCTATTGTTCTTGTGAACGATGAAATTGTGAAAATATCC 706
Query 723 GCCATTATCTTAAAACCGTGTCATTCTGAGGAAGACTCTGGCAACAAATCTGGCGATCTC 782
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 707 GCGATTATCTTGAAACCGTGTCACTCTGAGGAAGACTCTGGCAACAAATCTGGCGAGCTC 766
Query 783 TCAGTTGTATATGTATGTGAATTACCTGAAATATTGGGAAAATTTGACTTAGAGAAGGCT 842
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 767 TCAGTTGTATATGTATGTGAATTACCTGAAATTTTGGGAAAATTTGACTTAGAGAAGGCA 826
Query 843 AAGAAGGTTTTTGGTGTTAAGCCTGGTCCAAAATATAGTAGACTTCAGTCCGGTGAATCA 902
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 827 AAGAAGATTTTTGGTGTTAAGCCTGGTCCAAAATATAGTAAACTTCAGTCCGGCGAATCA 886
Query 903 GTGAAGTCAGATGAAAGAGATATTACGGTTCATCCAAGTGATGTTATGGGACCTTCACTC 962
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 887 GTGAAGTCGGATGAAAGAGATATTACGGTTTATCCAAGTGATGTTATGGGACCTTCACTT 946
Query 963 CCTGGTCCCATTGTTCTCCTTGTGGACTGTCCAACAGAGTCGCACGCTGCAGAACTGTTC 1022
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 947 CCTGGTCCCATTGTTCTCCTTGTGGACTGTCCAACTGAGTCGCACGCTGCAGAACTGTTC 1006
Query 1023 TCACTTAAGTCTTTGGAGAGTTATTATTCATCTCCTGACGAGCAAACC-ATTGGAGCAAA 1081
||| ||||||||||||| ||||||||||||| | |||| || |||||| | |||| | ||
Sbjct 1007 TCAGTTAAGTCTTTGGATAGTTATTATTCATGTACTGATGATCAAACCGA-TGGACCGAA 1065
Query 1082 GTTTGTAAATTGTATTATACATTTGAGCCCATCTTCTGTGACAAGTAGTCCTACTTACCA 1141
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1066 GTTTGTAAATTGTATTATACATTTGAGTCCATTTTCTGTGACAAGTAGTCCTACTTACCA 1125
Query 1142 AAGCTGGATGAAGAAGTTTCATT-TGACTCAACACATTCTTGCTGGCCATCAAAGGAAGA 1200
|||||||||||| || ||||||| | | |||||| ||||||||||| |||||||||||||
Sbjct 1126 AAGCTGGATGAATAAATTTCATTCT-AGTCAACATATTCTTGCTGGACATCAAAGGAAGA 1184
Query 1201 ATATGGCTTTCCCAATTCTGAAAGCAAGTTCAAGAATCGCTGCCAGACTTAACTATCTAT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1185 ATATGGCTTTCCCAATTCTGAAAGCAAGTTCAAGAATCGCTGCCAGACTTAACTATTTGT 1244
Query 1261 GCCCGCAGTTCTTTCCTGCTCCTGGATTTTGGCCTTCTCAACTTACCGATAACTCGATTA 1320
|||||||||||||||||||||||||||||||| | |||||||| | |||| ||||| |
Sbjct 1245 GCCCGCAGTTCTTTCCTGCTCCTGGATTTTGG-C--CTCAACTTGCTGATATGTCGATGA 1301
Query 1321 TTGATCCCACTCCTTCGAACAAGTGCTCAAGTTCAAATCTTGCTGAAAGCATTTCTGCTG 1380
| ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1302 TAGATTCCACTCCTTGGAACAAGTGCTCAAGTTCAAACCTTGCTGAAAGCATTTCTGCTG 1361
Query 1381 AAAATCTCCTCAAGTTCAATTTGCGTCCCGTGGCTATTCGTGGGATCGACAGATCGTGTA 1440
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1362 AAAATCTCCTCAAGTTCAATTTGCGTCCCGTGGCTATTCGTGGGATAGAAAGATCTTGTA 1421
Query 1441 TCCCTGCTCCACTAACATCCTCAGAAGTAGTGGATGAGCTACTTT-CTGAAATTCCGGAG 1499
||||||||| | | ||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1422 TCCCTGCTCAATTGACATCCTCAGAAGTATTGGATGAGCTA-TTTGATGAAATTCCGGAG 1480
Query 1500 ATAAAAGATAAAAGTGAAGAAATCAAGCAGTTCTGGAATAAACAACACAACAAGACAATC 1559
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1481 ATTAAAGATAAAAGCGAAGAAATCAAGCAGTTCTGGAATAAACAACACAACAAGACGATC 1540
Query 1560 ATCGAAAAGCTATGGCTGTCTGAGTGCAATACTGTTCTTCCAAACTGTCTTGAAAAGATT 1619
|||||||||||||||||| ||||| |||||||||||||||| | |||||||||||| |||
Sbjct 1541 ATCGAAAAGCTATGGCTGACTGAGAGCAATACTGTTCTTCCTAGCTGTCTTGAAAACATT 1600
Query 1620 AGACGAGATGACATGGAGATTGTTATTCTAGGCACTGGTTCGTCTCAGCCTTCAAAATAC 1679
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1601 AGACGAGATGACATGGAGATTGTTATTTTAGGCACTGGTTCGTCTCAGCCTTCAAAATAC 1660
Query 1680 CGAAACGTTAGTGCAATTTTTATTGACTTGTTCTCTAGAGGTAGTCTTCTCCTAGATTGT 1739
||||| || |||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 1661 CGAAATGTCAGTGCAATTTATATTGACCTATTCTCTAGAGGTAGTCTTCTCCTAGATTGT 1720
Query 1740 GGTGAAGGAACCTTGGGCCAGCTTAAAAGAAGATATGGTTTAGACGGTGCAGATGAGGCG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 GGTGAAGGAACCTTGGGCCAGCTTAAAAGAAGATATGGTTTAGACGGTGCAGATGAGGCG 1780
Query 1800 GTTAGAAAGTTGAGATGTATATGGATCTCTCACATCCACGCTGATCACCATACAGGTCTT 1859
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1781 GTTAGAAAGTTGAGATGTATATGGATCTCTCACATCCACGCCGATCACCATACAGGTCTT 1840
Query 1860 GCGAGGATTCTAGCTCTTAGGAG-CAAGCTTTTGAAAGGAGTGACTCACGAGCCAGTGAT 1918
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1841 GCGAGGATTCTAGCTCTTAG-AGGCAAGCTTTTGAAAGGAGTGACTCACGAGCCAGTGAT 1899
Query 1919 TGTGGTGGGGCCGAGGCCGCTTAAACGCTTTCTTGATGCATATCAAAGACTTGAGGATTT 1978
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1900 TGTGGTGGGACCGAGGCCGCTTAAACGCTTTCTCGATGCATATCAAAGACTTGAGGATTT 1959
Query 1979 AGATATGGAGTTTCTTGATTGTAGAAGCACCACAGCAACTTCTTGGGCTTCTTTAGAGAG 2038
||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1960 AGATATGGAATTTCTAGATTGTAGAAGCACCACAACAACTTCTTGGGCTTCTTTAGAAAG 2019
Query 2039 TGG-GG-G-CGAAGCTGAGGGTTCTTTGTTTACTCAAGGAAGTCCTATGCAGAGTGTCTT 2095
|| || | ||| || ||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 2020 CGGCGGCGGCGATGCAGAGGGATCTTTGTTTAGTGAAGGAAGTCCTATGCAGAGTGTCTT 2079
Query 2096 CAAAAGATCTGATATCTCGATGGATAATTCTTCGGTTTTGCTGTGTTTAAAGAATCTGAA 2155
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2080 TAAAAGATCTGATATCCCGGCGGATAATTCTTCGGTTTTGCTGTGTTTAAAGAATCTGAA 2139
Query 2156 GAAGGTTCTTAGCGAAATTGGATTGAATGATTTGATTAGTTTTCCTGTTGTACATTGTCC 2215
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2140 GAAGGTTCTTAGCGAAATCGGATTGGATGATTTGATTAGTTTTCCTGTTGTACATTGTCC 2199
Query 2216 TCAAGCGTATGGTGTTGTTATCAAGGCAGCTGAAAGAGTAAATAGTGTTGGAGAACAAAT 2275
|||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2200 TCAAGCCTATGGTGTCGTTATAAAAGCAGCTGAAAGAGTAAATAGTGTTGGAGAACAAAT 2259
Query 2276 CCTTGGATGGAAAATGGTTTATTCGGGCGACTCAAGACCTTG-CCCTGAGA-CGGTCGAA 2333
|| |||||||||||||||||||| |||||| |||||||||| ||| |||| || | |||
Sbjct 2260 CCCGGGATGGAAAATGGTTTATTCAGGCGACACAAGACCTTGTCCC-GAGATCGTT-GAA 2317
Query 2334 GCATCACGAGATGCAACAATTCTTATACATGAGGCAACGTTTGAAGATGCGTTGATAGAA 2393
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 2318 GCATCACGAGATGCAACAGTTCTTATACATGAGGCTACGTTTGAAGATGCATTGATAGAA 2377
Query 2394 GAAGCTTTGGCGAAGAATCACAGCACGACTAAAGAAGCAATCGATGTGGGATCTGCGGCG 2453
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2378 GAAGCTTTGGCGAAGAATCACAGCACGACTAAAGAAGCAATCGATGTGGGATCTTCTGCA 2437
Query 2454 AATGTGTATCGGATTGTTCTCACACATTTTAGCCAGAGATATCCGAAGATTCCAGTGATT 2513
|||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 2438 AATGCGTATCGGATTGTTCTCACGCATTTTAGCCAGCGATATCCGAAGATTCCGGTGATT 2497
Query 2514 GATGAGTCGCATATGCATAATACCTGCATTGCCTTTGATCTGATGAGTATAAACATGGCG 2573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2498 GATGAGTCGCATATGCATAATACCTGCATTGCCTTTGATCTGATGAGTATAAACATGGCG 2557
Query 2574 GATTTGCATGTGCTTCCTAAGGTTTTGCCGTATTTCAAAACTCTTTTCAGAGATGAGATG 2633
|||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 2558 GATTTGCAAGTGCTTCCTAAGGTCTTACCGTATTTCAAAACTCTCTTCAGAGATGAGATG 2617
Query 2634 GTTGAAGATGAGGATGCAGATGATGTTGCCATGGA 2668
|||||||||||||||||||||| ||||||||||||
Sbjct 2618 GTTGAAGATGAGGATGCAGATGGTGTTGCCATGGA 2652
> Ahg341756 jgi|Araly1|341756|fgenesh1_pg.C_scaffold_3001519
Length=2841
Score = 1007 bits (545), Expect = 0.0
Identities = 1112/1378 (81%), Gaps = 69/1378 (5%)
Strand=Plus/Plus
Query 680 TGAT-CCTATTGTTCTTGTGAATGATGAAGTTGTGAAAATATCCGCCATTATCTTAAAAC 738
|||| |||| |||||||||| |||| |||||||||||||| ||||||||| ||||| |||
Sbjct 801 TGATGCCTA-TGTTCTTGTGGATGACGAAGTTGTGAAAATCTCCGCCATTCTCTTAGAAC 859
Query 739 CGTGTCATTCTGAGGAAGACTCTGGCAACAAATCTGGCG-ATCTCTCAGTTGTATATGTA 797
| |||| || | ||||| || |||| |||| |||| | | | ||||| ||||||||
Sbjct 860 CAAGTCA--CTTA-GAAGAATCCGGCAGCAAACCTGGTGAAAC-GGCAGTTATATATGTA 915
Query 798 TGTGAATTACCTGAAAT-ATTGGGAAAATTTGACTTAGAGAAGGCTAAGAAGGTTTTTGG 856
||||||||||||||||| | ||||| |||||| | ||||||| | || | ||||
Sbjct 916 TGTGAATTACCTGAAATCA-AAGGAAAGTTTGACCCAAAGAAGGC---CATGGCTCTTGG 971
Query 857 TGTTA-AGCCTGGTCCAAAATATAG-TAGACTTCAGTCCGGTGAATCAGTGAAGTCAGA- 913
| | || ||||||||||||| || || ||||| || || | ||||| ||||||||
Sbjct 972 ACTGAGAG-CTGGTCCAAAATACAGTTA-TCTTCAATCTGGACAGTCAGTCAAGTCAGAT 1029
Query 914 TGAAAGAGATATTACGGTTCATCCAAGTGATGTTATGGGACCTTCACTCCCTGGTCCCAT 973
| || |||||||||||||||||| |||||||| |||||||||||| | |||||||| |
Sbjct 1030 TTTAA-AGATATTACGGTTCATCCGAGTGATGTGATGGGACCTTCAGTTCCTGGTCCTGT 1088
Query 974 TGTTCTCCTTGTGGACTGTCCAACAGAGTCGCACGCTGCA-GAACTGTTCTCA-CT-TA- 1029
|||| | ||||||||||||||||||||||| || || | | |||||| || | || ||
Sbjct 1089 TGTTTTGCTTGTGGACTGTCCAACAGAGTCACATGCCG-AGGAACTG--CT-ATCTATAC 1144
Query 1030 AGTCTTTGGAGAGTTATTATTCATCTCCTGACGA-GCAAACCA-TTGGAGCAAAGTTTGT 1087
|||| || | ||||||||||||| || |||| | | || || |||||| ||| ||||
Sbjct 1145 CGTCTATGAAAAGTTATTATTCATGTCTTGACAATTC-AA-CAGATGGAGCTAAGCTTGT 1202
Query 1088 AAATTGTATTATACATTTGAGCCCATCTTCTGTGACAAGTAGTCCTACTTACCAAAGCTG 1147
||||||||||| ||| | || ||| ||||||| |||| |||| |||| |||||||||||
Sbjct 1203 TAATTGTATTATTCATCTAAGTCCAGCTTCTGTAACAAATAGTTCTACATACCAAAGCTG 1262
Query 1148 GATGAAGAAG-TTTCATT-TGACTCAACACATTCTTGCTGGCCATCAAAG-GAAGAATAT 1204
||||||| || || | || || | || |||||||| ||||| ||| ||| |||||||||
Sbjct 1263 GATGAAG-AGATTCCGTTCTG-CCCAGCACATTCTCGCTGGACAT-GAAGCGAAGAATAT 1319
Query 1205 GG-CTTTCCCAATTCTGAAAGCAAGTTCAAGAATCGCTGCCAGACTTAACTATCTATGCC 1263
|| ||| ||||| |||| ||| ||||| |||||| | ||||||||||||||| ||||||
Sbjct 1320 GGAGTTT-CCAATCCTGAGAGCCAGTTCTAGAATCACAGCCAGACTTAACTATTTATGCC 1378
Query 1264 CGCAGTTCTTTCCTGCTCCTGGATTTTGGCCTTCTCAACTTACCGATAACTCGATTATTG 1323
| |||||||| ||||| |||||||||||| || |||||| | ||||||| | | |
Sbjct 1379 CACAGTTCTTCCCTGCGCCTGGATTTTGGTCTCCTCAACATGTTAATAACTC-A--A-TA 1434
Query 1324 ATC-CCACTCCTTCGAACAAGTGC-TCAAGTTCAAATCTTGCTGAAAGCATTTCTGCTGA 1381
| | ||||| ||| || ||||||| || | ||| ||||||| |||||||||||| |||||
Sbjct 1435 AACTCCACTTCTTTGAGCAAGTGCTTCGA-TTCGAATCTTGGTGAAAGCATTTCCGCTGA 1493
Query 1382 AAATCTCCTCAAGTTCAATTTGCGTCC-CGTGGCTATTCGTGGGATCGACAGATCGTGTA 1440
||||||||||||||||| ||||||||| | | | || || |||| | |||||| | ||||
Sbjct 1494 AAATCTCCTCAAGTTCACTTTGCGTCCACATAG-TAATCTTGGGGTAGACAGAACTTGTA 1552
Query 1441 TCCCT-GCTCCACTAACATCCTCA-GAAGTAG-TGGATGAGCTACTTTCTGAAATTCCGG 1497
||||| | || | | ||||||| | | ||| | |||||||||| ||||| |||||||| |
Sbjct 1553 TCCCTAG-TCGATTGACATCCTTACG-AGT-GATGGATGAGCTTCTTTCAGAAATTCCTG 1609
Query 1498 AGAT-AAAAGATAAAAGTGAAGAAATCAAGCAGTTCTGGAATAAACAACACAACAAGACA 1556
|||| | || ||| | ||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1610 AGATCAGCAG-TAAGACCGAAGAAATCAAGCGGTTATGGAATGGACAACACAACAAGATG 1668
Query 1557 ATCATCGAAAAGCTATGGCTGTCTGAGTGCAA-TACTGTTCTTCCAAACTGTCTTGAAAA 1615
|| |||||| ||| ||||||| | ||| || |||| |||||| ||||||||||||
Sbjct 1669 ATGATCGAAGAGCCATGGCTG---G-GTGAAAGCACTG---TTCCAAGCTGTCTTGAAAA 1721
Query 1616 GATTAGACGAGATGACATGGAGATTGTTATTCTAGGCACTGGTTCGTCTCAGCCTTCAAA 1675
|||||| |||||||||||||||| ||| || | ||||||||||| || || || |||||
Sbjct 1722 CATTAGAAGAGATGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCAACCCTCAAA 1781
Query 1676 ATACCGAAACGTTAGTGCAATTTTTATTGACTTGTTCTCTAGAGGTAGTCTTCTCCTAGA 1735
||||||||| || | ||||||| | ||| | ||||||||||| ||| ||||| | ||
Sbjct 1782 ATACCGAAATGTCACCGCAATTTACGTCGACCTATTCTCTAGAGGCAGTATTCTCTTGGA 1841
Query 1736 TTGTGGTGAAGGAACCTTGGGCCAGCTTAAAAGAAGATATGGTTTAGACGGTGCAGATGA 1795
|||||| ||||| ||||| |||||||||||| | |||||||||||||| || || |||||
Sbjct 1842 TTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGGAGATATGGTTTAGAAGGAGCTGATGA 1901
Query 1796 GGCGGTTAGAAAGTTGAGATGTATATGGATCTCTCACATCCACGCTGATCACCATACAGG 1855
|| || ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1902 AGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCACCATACGGG 1961
Query 1856 TCTTGCGAGGATTCTAGCTCTTAGGA-GCAAGCTTTTGAAAGGAGTGACTCACGAGCCAG 1914
|||||| || || || |||| || || | ||||| ||||||||||| |||| |||||||
Sbjct 1962 TCTTGCAAGAATCCTTGCTCGTA-GACGTGAGCTTCTGAAAGGAGTGGCTCATGAGCCAG 2020
Query 1915 TGATTGTGGTGGGGCCGAGGCCGCTTAA-ACGCTTTCTTGATGCATATCAAAGACTTGAG 1973
|||||||| || ||||| |||||||| | |||||| ||||||||||||||||| |||
Sbjct 2021 CAATTGTGGTTGGACCGAGACCGCTTAAGA-ACTTTCTCGATGCATATCAAAGACTCGAG 2079
Query 1974 GATTTAGATATGGAGTTTCTTGATTGTAG-AAGCACCACAGCAACTTCTTGGGCTTCT 2030
|||||||||||||||||||||||||| || || ||||||| |||||||||||||||||
Sbjct 2080 GATTTAGATATGGAGTTTCTTGATTGCAGGAA-CACCACAACAACTTCTTGGGCTTCT 2136
Score = 473 bits (256), Expect = 2e-132
Identities = 399/468 (85%), Gaps = 10/468 (2%)
Strand=Plus/Plus
Query 209 TTCTTCTAATTCATTCGTGTTCAATAAGCGAAGAGCTGAAGGATTTGACATA-ACCGATA 267
||||||| |||| |||| ||| |||||| |||||||||| ||||| || | | | |||||
Sbjct 288 TTCTTCTGATTCTTTCGAGTTTAATAAGAGAAGAGCTGAGGGATTGGATA-AGATCGATA 346
Query 268 AG-aaaaaaaGGAATCTAGAACGCA--AAT-CCCAAAAGCTTAATCCCACTAACACTATT 323
|| || || |||||| || | | ||| | | | |||||||| || ||||| |||
Sbjct 347 AGCCTAAGAA-GAATCT-CAA-G-AGGAATACTCGCACCCTTAATCCTACCAACACCATT 402
Query 324 GCTTACGCACAGATACTTGGAACTGGAATGGATACACAGGATACATCATCTTCTGTATTA 383
|| || | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 403 GCCTATGTTCAGATCCTTGGGACTGGAATGGATACACAGGATACATCACCTTCTGTATTA 462
Query 384 CTCTTCTTTGATAAGCAAAGATTCATCTTTAATGCTGGAGAGGGCTTGCAACGTTTTTGT 443
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 463 CTCTTCTTTGATAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCAACGTTTTTGT 522
Query 444 ACAGAACATAAGATTAAACTATCAAAGATAGATCATGTATTTTTGTCTCGTGTTTGCTCA 503
||||||||||| ||||| |||||||| |||||||| | |||||||||||||| ||||||
Sbjct 523 ACAGAACATAAAATTAAGTTATCAAAGGTAGATCATATCTTTTTGTCTCGTGTGTGCTCA 582
Query 504 GAGACAGCAGGAGGACTTCCAGGTCTTCTACTAACTCTAGCTGGTATTGGTGAAGAAGGG 563
||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 583 GAGACAGCAGGTGGGCTTCCAGGTCTTCTACTGACTCTAGCTGGTATCGGTGAAGAAGGA 642
Query 564 CTTTCGGTGAATGTATGGGGTCCTTCGGATCTTAACTATTTAGTTGATGCAATGAAGTCG 623
|| || || || || ||||| |||||||||||||| |||||||||||||| |||| |||
Sbjct 643 CTATCCGTAAACGTGTGGGGCCCTTCGGATCTTAAGTATTTAGTTGATGCTATGAGGTCA 702
Query 624 TTTATTCCACGGGCAGCTATGGTTCATACACGGAGTTTTGGTCCCTCG 671
|||||||| || || || |||||||||||| | ||||||||||| |||
Sbjct 703 TTTATTCCTCGTGCTGCAATGGTTCATACAAGAAGTTTTGGTCCATCG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109052371435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5