BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52180.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914379 jgi|Araly1|914379|Al_scaffold_0001_4633 353 4e-97
> Ahg914379 jgi|Araly1|914379|Al_scaffold_0001_4633
Length=747
Score = 353 bits (191), Expect = 4e-97
Identities = 234/255 (92%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 120 CCACAGCGTTGCGGTTAGAGTAGGATCAACACAAAGAGTAGTGATGGAGATCATAATCAC 179
||||| |||||||| | |||||||| || ||||| ||||||| |||||||||||||||||
Sbjct 369 CCACAACGTTGCGGCTGGAGTAGGAACAGCACAAGGAGTAGTAATGGAGATCATAATCAC 428
Query 180 ATTCGCATTGGTCTACACTGTTTACGCCACAGCCATTGACTCCAACAATGGCACTCTCGG 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATTCGCATTGGTCTACACCGTTTACGCCACAGCCATTGACTCCAACAATGGCACTCTCGG 488
Query 240 AACCATCGCTCCACTTGCTATCAGACTCATCGTTGGTGCTAACATTCTTGCAGCCGGCCC 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 489 AACCATCGCTCCACTTGCTATCGGACTCATCGTTGGTGCTAACATTCTTGCAGCCGGTCC 548
Query 300 ATTCTCTGGTGGT-CCAATGAACCCTGGACGTTCTTTTGGATCATCTCTTGCCGTTGGAA 358
|||||||| ||| ||| ||||||||| ||||| |||||| || ||||||| ||||||
Sbjct 549 GTTCTCTGGCGGTTCCA-TGAACCCTGCTCGTTCCTTTGGACCAGCTCTTGCGGTTGGAG 607
Query 359 ATTTTTCAGGACATT 373
|||||||||||||||
Sbjct 608 ATTTTTCAGGACATT 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13392611739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5