BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52190.1
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474334 jgi|Araly1|474334|fgenesh2_kg.1__4288__AT1G52190.1 3506 0.0
Ahg929433 jgi|Araly1|929433|scaffold_301890.1 1212 0.0
> Ahg474334 jgi|Araly1|474334|fgenesh2_kg.1__4288__AT1G52190.1
Length=2241
Score = 3506 bits (1898), Expect = 0.0
Identities = 2134/2248 (95%), Gaps = 16/2248 (1%)
Strand=Plus/Plus
Query 13 ctctctctctctctcAAATCACTTGCAAAGACAAAGAtcttccacttcctcttcttcttc 72
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTTTCTCTCTCAAATCACTTGCAAAGACAAAGATCTTCCACTTCCTCTTCTTCTTC 60
Query 73 ctctt-cctttttgccttt-ctctgtctccctctagagtctcttctATATAAATATCACT 130
|||| ||||||| ||| | || |||| | | | |||| ||||||||| ||||||
Sbjct 61 TTCTTCCCTTTTT-TTTTTAC-CTTTCTCTGT-TTCA--CTCTCCTATATAAAGATCACT 115
Query 131 AGATTTAGTGTTTGATCAAATCACATTCAACAATGGAGAACCCTCCCAATGAAACCGAGG 190
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 116 AGATTTAGTGTTTGATC-AATCACATTCAACAATGGAGAACCCTCCTAATGAAACCGAGG 174
Query 191 CTAAGCAAATCCAAACCAATGAAGGCaaaaaaaCAAAGGGTGGAATCATCACTATGCCTT 250
||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 CTAAGCAGATCCAACCCAATGAAGGCAAAAAAACAAAGGGTGGAATCATCACCATGCCTT 234
Query 251 TTATCATAGCTAACGAGGCGTTTGAGAAAGTGGCGAGTTATGGATTACTACCAAACATGA 310
|||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 235 TTATCATAGCAAACGAGGCGTTCGAGAAAGTGGCGAGTTATGGATTATTACCAAACATGA 294
Query 311 TTATGTACTTAATCAGAGATTATAGATTTGGAGTAGCAAAAGGAACAAATGTGCTTTTCA 370
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 295 TTATGTACTTAATCAGAGATTACAGATTTGGAGTAGCAAAAGGAACAAATGTGCTCTTCA 354
Query 371 TGTGGTCTGCTGCATCAAATTTCACTCCTCTCTTGGGTGCTTTTCTCTCTGATTCCTATC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGTGGTCTGCTGCATCAAATTTCACTCCTCTCTTGGGTGCTTTTCTCTCTGATTCCTATC 414
Query 431 TTGGTCGCTTCCTCACCATCTCCATTGCTTCTCTCTCCAGTTTCTTGGGAATGGTGCTTT 490
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 415 TTGGTCGCTTCCTCACCATCTCCATTGCTTCTCTCTCCAGTTTCTTGGGGATGGTGCTTT 474
Query 491 TATGGCTAACTGCAATGTTACCACAAGTGAAGCCATCGCCTTGCGATCCCACAGCAGCCG 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 475 TATGGCTAACTGCAATGTTACCACAAGTGAAGCCATCGCCTTGCGATCCCACAGCAGCTG 534
Query 551 GAAGCCACTGTGGGTCTTCGACCGCATCTCAGCTGGCTCTTTTGTATTCCGCATTTGCCC 610
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 535 GAAGTCACTGTGGGTCTTCGACCGCGTCTCAGCTGGCTCTTTTGTATTCCGCATTTGCCC 594
Query 611 TTATATCGATCGGGTCAGGCGGGATCAGACCATGTTCCTTAGCATTTGGAGCTGATCAAC 670
|||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 595 TTATATCGATTGGGTCAGGCGGTATCAGACCGTGTTCCTTAGCATTTGGAGCTGATCAAT 654
Query 671 TAGACAACAAAGAGAACCCAAAAAATGAAAGAGTTCTCGAGAGTTTCTTTGGTTGGTACT 730
|||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||
Sbjct 655 TAGACAACAAAGAGAATCCAAAGAACGAAAGAATTCTCGAGAGTTTCTTTGGTTGGTACT 714
Query 731 ACGCTTCCTCAGCTGTGGCGGTTCTCATCGCGTTCACGGGTATTGTATACATTCAGGAGC 790
| |||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 715 ATGCTTCCTCGGCTGTGGCTGTACTCATCGCATTCACGGGAATTGTATACATTCAGGAGC 774
Query 791 ATCTCGGGTGGAAAATCGGGTTTGGAGTACCTGCGGTCCTCATGTTGATCGCTGCTTTGC 850
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 775 ATCTCGGATGGAAAATCGGGTTTGGAATACCTGCGGTCCTCATGTTGATCGCTGCTTTAC 834
Query 851 TATTCATTCTTGCGTCTCCTCTCTATGTTACACGTGGTGTGACCAAGAGTCTCTTCACCG 910
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TATTCATTCTCGCGTCTCCTCTCTATGTTACACGTGGTGTGACCAAGAGTCTCTTCACCG 894
Query 911 GTTTAGCTCAAGCGATTGTTGCAGCTTACAAGAAGAGGAAGCTAAGTCTACCAGATCATC 970
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 GTTTAGCTCAAGCGGTTGTTGCAGCTTACAAGAAGAGGAAGCTAACTCTACCAGATCATC 954
Query 971 ATGACTCCTTTGATTGTTATTATCACATGAAAGATTCTGAAATCAAAGCTCCAAGTCAAA 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATGACTCCTTTGATTGTTATTATCACATGAAAGATTCTGAAATCAAAGCTCCAAGTCAAA 1014
Query 1031 AGTTGAGGTTTTTGAATAAAGCTTGTTTAATAAGTAACCGTGAGGAGGAGATTGGGTCAG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGTTGAGGTTTTTGAATAAAGCTTGTTTAATAAGTAACCGTGAGGAGGAGATTGGGTCAG 1074
Query 1091 ATGGGTTTGCTTTGAATCCATGGAGGCTATGTACAACAGACAAAGTAGAGGAGCTTAAGG 1150
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 ATGGGTTTGCTTTGAATCCATGGAGGCTATGCACAACAGACAAAGTAGAGGAGCTTAAGG 1134
Query 1151 CATTGATCAAAGTCATACCCATATGGTCCACAGGTATAATGATGTCCATAAACACTAGCC 1210
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CATTGATCAAAGTCATACCGATATGGTCCACAGGTATAATGATGTCCATAAACACTAGCC 1194
Query 1211 AAAGTTCGTTTCAGTTACTGCAAGCGACTTCCATGGACAGGCGTCTGAGCCGCCATGGTT 1270
|||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1195 AAAGCTCGTTTCAGTTGCTGCAAGCGACTTCTATGGACAGGCGTCTGAACCGCCATGGTT 1254
Query 1271 CAAGCTTTCAAGTTCCAGCTGGATCATTCGGTATGTTCACAATCATAGCTCTAGCCCTAT 1330
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1255 CAAGCTTTCAAGTTCCAGCTGGATCATTCGGTATGTTTACAATCATAGCTCTAGCCCTGT 1314
Query 1331 GGGTCATTCTATATGACCGTGCGGTTATCCCATTAGCTTCCAAGATCCGAGGCAGACCTT 1390
||||| |||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||
Sbjct 1315 GGGTCGTTCTATATGACCGTGCGGTTATCCCACTAGCTTCAAAGATTCGAGGTAGACCTT 1374
Query 1391 TTAGACTTAGCGTTAAGCTAAGAATGGGATTAGGATTATTCATGTCATTCTTAGCAATGG 1450
||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1375 TTAGACTCAGCGTTAAGCTAAGAATGGGATTAGGGTTATTCATGTCATTTTTGGCAATGG 1434
Query 1451 CAATTTCCGCAATGGTTGAAAGCTTCAGAAGGAAAAAAGCTATAAGCCAAGGATATGCAA 1510
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1435 CGATTTCCGCAATGGTTGAAAGCTTCAGAAGGAAAAAAGCTATAAGCCAAGGGTATGCAA 1494
Query 1511 ACAATTCAAATGCTGTGGTAGACATCTCAGCAATGTGGCTTGTGCCACAATATGTTCTAC 1570
||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1495 ACAATGCCAATGCTGTGGTAGACATCTCAGCGATGTGGCTTGTGCCACAATATGTGCTAC 1554
Query 1571 ATGGTTTAGCAGAGGCTCTTACCGCAATAGGACAGACTGAGTTTTTCTACACCGAGTTTC 1630
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATGGATTAGCAGAGGCTCTTACCGCAATAGGACAGACTGAGTTTTTCTACACCGAGTTTC 1614
Query 1631 CTAAAAGTATGTCTAGCATCGCGGCTTCTCTCTTCGGTTTAGGAATGGCTGTGGCTAGTC 1690
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1615 CTAAAAGCATGTCTAGCATCGCTGCTTCTCTCTTCGGTCTAGGAATGGCTGTGGCTAGTC 1674
Query 1691 TATTGGCAAGCGTGGTCCTCAATGCGGTCAATGAACTAACTTCTAGAAATGGTAAAGAGA 1750
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1675 TATTGGCAAGTGTGGTCCTCAATGCGGTCAATGAACTAACCTCAAGAAATGGTAAAGAGA 1734
Query 1751 GTTGGGTTTCAGACAACATTAACAAGGGTCACTACAACTATTACTATTGGGTACTCGCGA 1810
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1735 GTTGGGTTTCGGACAACATTAACAAGGGTCATTACAACTATTACTATTGGGTACTCGCGA 1794
Query 1811 TAATGAGCTTCATCAATGTGATCTACTACGTGATATGTAGCTGGTCGTATGGTCCTTTGG 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TAATGAGCTTCATCAATGTGATCTACTACGTGATATGTAGCTGGTCGTATGGTCCTTTGG 1854
Query 1871 TCGACCAGGTAAGGAATGGTAGGGTTAATGGTGTGAGAGAGGAAGAGGAGTTGATTGACA 1930
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1855 TCGACCAGGTAAGGAATGGTAGGGTTAATGGTGTGAGAGAGGAAGAGGAGCTGCTTGACA 1914
Query 1931 TTGTTGGCAAAGGATTCGAGAAGGAAGATCTAAGTCCAGTTGTTAAAACCAATTAAGGAA 1990
||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1915 TTGTTGGGAAAGGCTTCGAGAAGGAAGATCTAAGTCCAGTTATTAAAACCATTTAAGGAA 1974
Query 1991 CAATAGGTCTTGCAAGCTTGTATTTTGTTTATAAAGGGAGCGATAAA-CTATA----GGA 2045
|||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||
Sbjct 1975 TTATAGGTCTTGCAAGCTTGTATTTTGTCTATAAAGGGAGCGAAAAAACTATATATAGGA 2034
Query 2046 AATGATATTTTATTGCATTGGTGTGTGGTGTTATTAAGTGTTAATTAAAGTCTATATAGA 2105
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 AATGGTATTTTATTGTTTTGGTGTGTGGTGTTATTAAGTGTTAATTAAAGTCTATATAGA 2094
Query 2106 TTTGTAATTAGATTGAATTATGTGTTTGGGTTTTCATTAGGGTTTTTGATGAAAAGGT-A 2164
||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |
Sbjct 2095 TTTGTAATTAGATTGAATTATGTATTTGGGTTTTAATTAGGGTTTTTGATGAAAATGTCA 2154
Query 2165 ATGGTTTTT-GGTTGTATACAAGCCAAAGTGTTTGTTGTAtttttttttttCGTGTTATT 2223
| ||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2155 ACGGTTTTTTGGTTGTGTACAAGCCAAAGTGGTTGTTGTATTTTTTTTTTT-GTGTTATT 2213
Query 2224 GCAATTCAAGGAGTCTTGTGTATATATT 2251
|||||||| |||||||| ||| ||||||
Sbjct 2214 GCAATTCATGGAGTCTTCTGTCTATATT 2241
> Ahg929433 jgi|Araly1|929433|scaffold_301890.1
Length=1823
Score = 1212 bits (656), Expect = 0.0
Identities = 1384/1730 (80%), Gaps = 71/1730 (4%)
Strand=Plus/Plus
Query 222 aaCAAAGGGTGG-AATCATCACTATGCCTTTTATCATAGCTAACGAGGCGTTTGAGAAAG 280
|||||||||||| || |||||||||| || ||||| || ||||||| ||| |||||||
Sbjct 90 AACAAAGGGTGGTCTTC-TCACTATGCCCTTCATCATTGCAAACGAGGGGTTCGAGAAAG 148
Query 281 TGGCGAGTTATGGATTACTACCA-AACATGATTATGTACT-TAATCAGAGATTATAGATT 338
||||||| |||||||| || || ||||||||| | || | | || || ||||| |||||
Sbjct 149 TGGCGAGCTATGGATTGTTA-CAGAACATGATTCTTTA-TCTGATGAGTGATTACAGATT 206
Query 339 TGGAGTAGCAAAAGGAACAAA-TGTGCTT-TTCATGT-GGTCTGCTGCAT-CAAATTTCA 394
||| | | ||||| ||||| ||| ||| ||||||| ||| |||||| | | |||||||
Sbjct 207 GGGACTTGTTAAAGG-ACAAACTGT-CTTGTTCATGTGGGT-TGCTGC-TACTAATTTCA 262
Query 395 CT-CCTCTC-TTGGGTGCTTTTCTCTCTGATTCCTATCTT-GGTCGCTTCCTCACCATCT 451
| |||||| || || ||||||||||| ||||| ||| || |||||||| |||||||| |
Sbjct 263 -TGCCTCTCGTT-GGAGCTTTTCTCTCAGATTCATAT-TTGGGTCGCTTTCTCACCAT-T 318
Query 452 -CCATTGCTTCTCTCTCCAGTTTCTTGGGAATGGTGCTTTTATGGCTAACTGCAATGTTA 510
|||||||||||||||||||| || |||| |||||| || |||||||||| || ||||||
Sbjct 319 GCCATTGCTTCTCTCTCCAGTCTCCTGGGCATGGTGGTTCTATGGCTAACGGCGATGTTA 378
Query 511 CCACAAGTGAAGCCATCGCCTTGCGATCCCACAGCAGCCGGAAGCCA-CTGTGGGTCTTC 569
|| |||||||||||||| || || | | || | ||||||||| ||| || | || |
Sbjct 379 CCGCAAGTGAAGCCATCACCGTGTG-TAGCA-A-CAGCCGGAA-CCAGTTGCAGTTCCAC 434
Query 570 GACCGCATCTCAGCTGGCTCTTTTGTATTCCGCATTTGCCCTTATATCGATCGGGTCAGG 629
||| | || || |||||||||||||||||||||| || ||||||||||| || |||||
Sbjct 435 GACATCTTCCCAATTGGCTCTTTTGTATTCCGCATTCGCACTTATATCGATTGGATCAGG 494
Query 630 CGGGATCAGACCATGTTCCTTAGCATTTGGAGCTGATCAACTAGACAACAAAGAGAACCC 689
||| ||||| |||||||| ||||| ||||| ||||||||| | |||||||||||||| ||
Sbjct 495 CGGAATCAGGCCATGTTCTTTAGCCTTTGGTGCTGATCAATTGGACAACAAAGAGAATCC 554
Query 690 AAAAAATGAAAGAGTTCTCGAGAGTTTCTTTGGTTGGTACTACGCTTCCTCAGCTGTGGC 749
|| || || |||||||| ||||| ||||| || |||||||||||||| ||| | || ||
Sbjct 555 TAAGAACGAGAGAGTTCTTGAGAGCTTCTTCGGATGGTACTACGCTTCTTCATCGGTAGC 614
Query 750 GGTTC-TCATCGCGTTCACGGGT-ATTGTATACATTCAGGAGCATCTCGGGTGGAAAATC 807
| || | || || ||||| || ||||| |||||||| || ||||| || |||||||||
Sbjct 615 TG-TCTTGATTGCTTTCAC-TGTCATTGTTTACATTCAAGATCATCTAGGATGGAAAATC 672
Query 808 GGGTTTGGAGTACCTGCGGTCCTCATGTTGATCGCTGCTTTGC-TATTCATTCTT-GCGT 865
||||||||| | || || | |||||| || |||||| ||| | | || || || || |
Sbjct 673 GGGTTTGGAATCCCCGCCATTCTCATGCTGTTCGCTGGTTT-CTTGTTTGTT-TTGGCCT 730
Query 866 CTCCTCTCTATGTTACACGTGGTGTGACCAAGAGTCTCTTCACCGGTTTAGCTCAAGCGA 925
|||||||||| |||| ||| ||||| ||||||||| ||||| ||||||||||||| |
Sbjct 731 CTCCTCTCTACGTTAAACGCAATGTGAGCAAGAGTCTGTTCACTGGTTTAGCTCAAGTGG 790
Query 926 TTGTTGCAGCTTACAAGAAGAGGAAGC-TAAGTCTACCAGATCATCATGACTCCTTTGAT 984
||| |||||||||| ||| |||| | ||| | |||| |||| |||||||||| |||
Sbjct 791 TTGCTGCAGCTTACGTGAACCGGAA-CTTAACTTTACCGGATCCTCATGACTCCAGAGAT 849
Query 985 TGTTATTATCACATGAAAGATTCTGAAATCAAAGCTCCAAGTCA-AAAGTTGAGGTTTTT 1043
|||||||||| |||||||||||||| |||||||||||||| | ||| ||||||||| |
Sbjct 850 TGTTATTATCGTTTGAAAGATTCTGAACTCAAAGCTCCAAGTGACAAA-TTGAGGTTTCT 908
Query 1044 GAATAAAGCTTGTTTAATAAGTAACCGTGAGGAGGAGATTGGGTCAGATGGGTTTGCTTT 1103
|| ||||||||| ||||| ||||| || || || |||| || ||||| || || ||
Sbjct 909 AAACAAAGCTTGTGCCATAAGCAACCGCGATGAAGACCTTGGTTCTGATGGCTTGGCCTT 968
Query 1104 GAATCCATGGAGGCTATGTACAACAGACAAAGTAGAGGAGCTTAAGGCATTGATCAAAGT 1163
|| ||||||||||| || ||||||||| |||| ||||| || ||||| ||| | |||||
Sbjct 969 AAACCCATGGAGGCTCTGCACAACAGACCAAGTCGAGGAACTCAAGGCCTTGGTAAAAGT 1028
Query 1164 CATACCCATATGGTCCACAGGTATAATGATGTCCATAAACACTAGCCA-AAGTTCGTTTC 1222
||||| |||||||||| || |||||||||||||||||| |||||| || |||||||
Sbjct 1029 GATACCGGTATGGTCCACGGGGATAATGATGTCCATAAACGTTAGCCAGAA-CTCGTTTC 1087
Query 1223 AGTTACTGCAAGCGACTTCCATGGACAGGCGTCTGAGCCGCCATGGTTCAAGCTTTCAAG 1282
|||| || ||||| | || |||||||| ||| ||||| | | | ||| ||||| |||
Sbjct 1088 AGTTGCTTCAAGCTAAATCGATGGACAGACGTTTGAGCAG-C--GATTCGAGCTTCCAAA 1144
Query 1283 TTCCAGCTGGATCATTCGGTATGTTCACAATCATAG-CTCT-AGCCCTATGGGTCATTCT 1340
| || |||||||| |||||||||||||||||||||| || | | | | ||||||| ||||
Sbjct 1145 TCCCTGCTGGATCGTTCGGTATGTTCACAATCATAGCCT-TAATCTC-ATGGGTCGTTCT 1202
Query 1341 ATATGACCGTGCGGTTATCCCATTAGCTTCCAAGATCCGAGGCAGACCTTTTAGACTTAG 1400
|| ||||| || | |||| |||||||| || |||||||||||||| |||| | |
Sbjct 1203 GTACGACCGCGCAATCCTCCCTTTAGCTTCAAAAATCCGAGGCAGACCGGTTAGGGTCAA 1262
Query 1401 CGTTAAGCTAAGAATGGGATTAGGATTATTCATGTCATTCTTAGCAATGGCAATTTCCGC 1460
|| ||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1263 TGTCAAGATTCGAATGGGATTAGGGCTATTCATATCATTCTTAGCAATGGCGGTTTCCGC 1322
Query 1461 AA-TGGTTGAAAGC-TT-CAGAAGGAAAAAAGCTATAAGCCAAGGATAT-GCAAACAAT- 1515
|| | |||| ||| || ||||||||||| || |||||||||||| | |||||| ||
Sbjct 1323 AACT-GTTG--AGCATTACAGAAGGAAAACTGCGATAAGCCAAGGA-CTCGCAAACGATG 1378
Query 1516 TCAAATGCTGTGGTAG-ACATCTCAGCAATGTGGCTTGTGCCACAATATGTTCTACATGG 1574
||| | | || | |||||||||||||||||||||| || || ||||| ||||| ||
Sbjct 1379 CCAACT-CAACAGT-GAACATCTCAGCAATGTGGCTTGTACCGCAGTATGTACTACACGG 1436
Query 1575 TTTAGCAGAGGCTCTTA-CCGCAATAGGACAGACTGAGTTTTTCTACACCGAGTTTCCTA 1633
|||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1437 TTTAGCAGAGGC-CTTAACCGGGATAGGACAGACCGAGTTTTTCTACACCGAGTTTCCTA 1495
Query 1634 AAAGTATGTCTAGCATCGCGGCTTCTCTCTTCGGTTTAGGAATGGCTGTGGCTAGTCTAT 1693
|||| ||||| || ||||| |||||||| || ||| |||||||||| ||||||| | |||
Sbjct 1496 AAAGCATGTCGAGTATCGCTGCTTCTCTGTTTGGTCTAGGAATGGCAGTGGCTAATATAT 1555
Query 1694 TGGCAAGCGTGGTCCTCAATGCGGTCAATGAACTAACTTCTA-GAAATGGTAAAG-AGAG 1751
|||| || ||| |||| ||||| ||||| ||| || || | | ||| || || | | ||
Sbjct 1556 TGGCTAGTGTGATCCTAAATGCTGTCAA-GAA-TAGCT-CAAAGAAG-GGCAACGTA-AG 1610
Query 1752 TTGGGTTTCAGACAACATTAACAAGGGTCACTACAACTATTACTATTGGGTACTCGCGAT 1811
||| || ||| || || ||||||||||||||| |||||||||||||| | | |||||
Sbjct 1611 CTGGATTGAAGATAATATCAACAAGGGTCACTACGACTATTACTATTGGATTTTAGCGAT 1670
Query 1812 AATGAGCTTCATCAATGTGATCTACTACGT-GATATGTAGCTGGTCGTATGGTCCTTTGG 1870
|||||||| | ||||| ||||||||||| | | ||||||||||| ||||||||| ||
Sbjct 1671 CTTGAGCTTCGTTAATGTCATCTACTACGTTG-TGTGTAGCTGGTCTTATGGTCCTACGG 1729
Query 1871 TCGACCAGGTAAGGAATGGTAGGGTTAATGGTGTGAGAGAGGAAGAGGAG 1920
| || ||||| ||||||| || |||||||||| ||||||| ||||| |||
Sbjct 1730 TGGATCAGGTGAGGAATGATAAGGTTAATGGTATGAGAGAAGAAGAAGAG 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86007773210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5