BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52200.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923732 jgi|Araly1|923732|scaffold_105013.1 859 0.0
> Ahg923732 jgi|Araly1|923732|scaffold_105013.1
Length=608
Score = 859 bits (465), Expect = 0.0
Identities = 569/617 (92%), Gaps = 15/617 (2%)
Strand=Plus/Plus
Query 105 CACTTAACATATCAA-C-CA-ATGGGTCGTGTCACTACTCCATCCGAGGAGGATTCAAAC 161
||||||||||||||| | | ||||||||||||| ||||||||| ||||||||| |||||
Sbjct 1 CACTTAACATATCAATCAAATATGGGTCGTGTCAGTACTCCATCAGAGGAGGATCCAAAC 60
Query 162 AACGGTTTACCGGTTCAGCAACCCGGTACACCGAACCAGCGAACCAGAGTTCCCGTGAGT 221
|||||| ||||||||| |||| | |||||||| ||||||||||| ||||||||||||||
Sbjct 61 AACGGTATACCGGTTCCGCAAACGGGTACACCCAACCAGCGAACTGGAGTTCCCGTGAGT 120
Query 222 CAATTCGCGCCGCCGAATTATCAGCAAGCTAATGTTAACCTATCTGTTGGGAGGCCATGG 281
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATTCGCGCCGCCAAATTATCATCAAGCTAATGTTAACCTATCTGTTGGGAGGCCATGG 180
Query 282 AGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGCCGTTTTGACCA-CAAT-TG 339
||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||| |
Sbjct 181 AGCACTGGTTTGTTTGATTGTCAAGCAGACCAAACCAATGCCGTTATGAC-AGCAATCT- 238
Query 340 TACCTTGTGTAACATTTGGACAAATAGCAGAAGTGA-TGGATGAAGGAGAGATGACTTGT 398
|||||||||| ||||||||||||||||| ||||| | ||||||||||||||| |||||||
Sbjct 239 TACCTTGTGTGACATTTGGACAAATAGCGGAAGT-ACTGGATGAAGGAGAGACGACTTGT 297
Query 399 CCTCTTGGAACTTTCATGTACTTATTGATGATGCCGGCTTTATGCTCTCACTGGGTGATG 458
|||||||||| |||||| ||||| ||||||||||||||||||||||| || |||||||||
Sbjct 298 CCTCTTGGAAGTTTCATATACTTGTTGATGATGCCGGCTTTATGCTCACAATGGGTGATG 357
Query 459 GGATCAAAGTATAGAGAAAAAATGAGGAGAAAATTTAATCTTGTGGAAGCTCCATATTCA 518
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 GGATCAAAGTATAGGGAAAAAATAAGGAGAAAATTTAATCTTGTGGAAGCTCCATATTCG 417
Query 519 GATTGTGCCAGTCATGTCCTATGCCCTTGTTGCTCTCTTTGTCAAGAATACAGAGAGCTC 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GATTGTGCCAGTCATGTCCTATGCCCTTGTTGCTCTCTTTGTCAAGAATACAGAGAGCTC 477
Query 579 AAGATTAGGAATCTTGATCCTTCTCTAGGTTGGAATGGGATACTTGCTCAAGGACAAGGA 638
||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 478 AAGGCTAGGAATCTTGATCCTTCTCTAGGTTGGAATGGGATACTTGCTCAA--A---G-A 531
Query 639 CAATATGAGAGAGAAGCACCAAGTTTTGCTCCTACAAATCAATATATGTCTAAGTAAACA 698
||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 532 CAATATGAGAGTGAAGCCCCAAACTTTGCTCCTACAAATCAATATATGTCTAAGTAAACA 591
Query 699 TTTGATTTTAGTTGACT 715
||||||| |||||||||
Sbjct 592 TTTGATTATAGTTGACT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5