BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52220.1

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923739 jgi|Araly1|923739|scaffold_105020.1                        699    0.0  


> Ahg923739 jgi|Araly1|923739|scaffold_105020.1
Length=519

 Score =  699 bits (378),  Expect = 0.0
 Identities = 470/512 (92%), Gaps = 16/512 (3%)
 Strand=Plus/Plus

Query  73   tct-ttttatttttttAAAGAATGGCTTCAATTTCTGCAACTTTGCCTTCGCCATTGTTA  131
            ||| |||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  3    TCTGTTTT-TTTTTGGAAAAAATGGCTTCAATTTCTGCAACTTTGCCTTCGCCATTGTTA  61

Query  132  CTCACACAGAGAAAATCCAATCTCACATCGATTCAAAAACTCCCATTTTCTCTAACTCGA  191
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  62   CTCACACAGAGAAAATCTAATCTCACATCGATTCAAAAACTCCCATTTTCTCTAACTCGA  121

Query  192  GGTACGAATG--ATCTTTCTCCATTATCTCTTA--CTCG---AAACCCT---AGCAGCAT  241
            ||||||||||  || |||||||||| || || |  ||||     ||| |   || |||||
Sbjct  122  GGTACGAATGACAT-TTTCTCCATTTTCACTAACTCTCGTTTTCACCTTAAGAGTAGCAT  180

Query  242  CAGTCTGATGGTGAAAGCTAGTGGAGAAAGCTCAGATTCATCGACTGATCTCGACGTTGT  301
            || ||| |||||||||||||||   ||||||||||| ||||||||||||||||| |||||
Sbjct  181  CACTCTTATGGTGAAAGCTAGT---GAAAGCTCAGAATCATCGACTGATCTCGATGTTGT  237

Query  302  TAGTACGATTCAGAATGTTTGGGATAAGTCTGAAGATAGGTTAGGTCTTATTGGTTTGGG  361
            |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  238  TAGTTCGATTCAGAATGTTTGGGATAAGTCTGAAGATCGGTTAGGTCTTATTGGTTTGAG  297

Query  362  TTTTGCTGGTATTGTAGCTCTTTGGGCATCATTGAATCTCATCACGGCAATCGACAAATT  421
            |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  298  TTTTGCTGCTATTGTAGCTCTTTGGGCATCACTGAATCTCATCACGGCAATCGACAAATT  357

Query  422  GCCCGTTATCTCGAGCGGATTCGAACTAGTTGGTATCTTGTTCTCCACGTGGTTCACATA  481
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  358  GCCCGTTATCTCGACCGGATTCGAACTAGTTGGTATCTTGTTCTCCACGTGGTTCACGTA  417

Query  482  TCGATATCTCTTGTTCAAACCGGACAGACAGGAGCTTTCGAAAATTGTCAAGAAATCAGT  541
            |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct  418  TCGATATCTCTTGTTCAAACCGGACAGAGAGGAGCTTTCCAAAATTGTCAAGAAATCAGT  477

Query  542  AGCGGATATACTTGGCCAGTGAACCTTGTGTG  573
            ||| |||||||||||||||||||| |||||||
Sbjct  478  AGCAGATATACTTGGCCAGTGAACGTTGTGTG  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28172835663


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5