BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52240.1
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337379 jgi|Araly1|337379|fgenesh1_pg.C_scaffold_1003944 2641 0.0
Ahg474342 jgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1 527 1e-148
Ahg479066 jgi|Araly1|479066|fgenesh2_kg.3__1767__AT3G16120.1 222 7e-57
> Ahg337379 jgi|Araly1|337379|fgenesh1_pg.C_scaffold_1003944
Length=1617
Score = 2641 bits (1430), Expect = 0.0
Identities = 1533/1583 (97%), Gaps = 6/1583 (0%)
Strand=Plus/Plus
Query 464 ATTTCAATGATAACATGAACGAAAACTCAGCTTCAAGACATGTTAAAAGCTGGAGCTCAG 523
||||||| | ||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 41 ATTTCAA-G--AACATGAACGAGAACTCAGCTTCAAGACATATTAAAAGTTGGAGCTCAG 97
Query 524 ATTGTGCAATGAGAATGGATGGTTCTGACAATTTGgatgatgatgataatgacatgatga 583
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 98 ATTGTGCAATGAGAATGGATGGTTCAGACAATTT-G--GATGATGATAATGACATGATGA 154
Query 584 tgTTTAGGAGTCAACCCGGAAAATGTGGCAGCGTTGACCGACCTTCTTTGCCTATAGGCG 643
|||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||
Sbjct 155 TGTTTAGGAGTCAACCGGGCAAATTTGGCAGCGTTGACCGACCTTCTTTGCCTCTAGGCG 214
Query 644 GAGTAACGCCTAATCGCAATGACAAGCTTCCGAGAGTCTCTTCATCGGATTCCATGGAGG 703
||||||| ||||| ||||| |||||||||||||||||| |||||||||| ||||||||||
Sbjct 215 GAGTAACACCTAACCGCAACGACAAGCTTCCGAGAGTCGCTTCATCGGAATCCATGGAGG 274
Query 704 CACTAATAATATTGCAAGCAGCAATGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTC 763
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CACTATTAGTATTACAAGCAGCAATGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTC 334
Query 764 TTGGAGAAGATATGTCAGGAGGAGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TTGGAGAAGATATGTCAGGAGGAGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACG 394
Query 824 CCATTACCAATCTCGCAGCGTCTGCGTTTGGAGAACAACGGCGTTTAGAGCCAATGGCGG 883
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 395 CCATTACCAACCTCGCAGCTTCTGCATTTGGAGAACAACGGCGTTTAGAGCCAATGGCGG 454
Query 884 TGGATAGAAAAACGCGTTGGAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATTATA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 455 CGGATAGAAAAACGCGTTGGAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATCATA 514
Query 944 TAGTTGAATTCGCTCCAACACAACAAACAAACAAAGATGGTACTTCAATGGAAGTCATGT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TAGTTGAATTCGCTCCAACACAACAAACAAACAAAGATGGTACTTCAATGGAAGTCATGT 574
Query 1004 CAACAAGACAAAGAACAGATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CAACAAGACAAAGAACAGATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTA 634
Query 1064 TGCTTCTCGATTGTCTTGATAAATTCAAGGATCAGGATGAGTTTTATTATGTTAAAAAAG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 635 TGCTTCTCGATTGTCTTGATAAATTCAAGGATCAGGATGAGTTTTATTATGTCAAAAAAG 694
Query 1124 ATTCTCCTGATTCTTGCGAGACAAGGAACGATGAGAAATGGTGGTTACCGGCAGTAAAAG 1183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ATTCTCCTGATTCTTCCGAGACAAGGAACGATGAGAAATGGTGGTTACCGGCAGTAAAAG 754
Query 1184 TCCCACCTAACGGCCTCTCAGAGATATCAAGAAGGTTTCTACAGAGCCAGAAGGAATGTG 1243
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 755 TCCCACCTAACGGGCTCTCAGAGATATCGAGAAGGTTTCTCCAGAGCCAGAAGGAATGTG 814
Query 1244 TGAATCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGTCTGAAATGGAGA 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGAATCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGTCTGAAATGGAGA 874
Query 1304 TTCCTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAGCTTGGGAGATGTGA 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TTCCTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAGCTTGGGAGATGTGA 934
Query 1364 TATACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTAATTGAAATGGATT 1423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 935 TATACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTTATTGAAATGGATT 994
Query 1424 TATCATCTGAGCACAAGATTCTTGATCTAAAGAACAGAATCGAAGCATCGATTGTGATAT 1483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 995 TATCATCTGAGCACAAGATTCTTGATTTAAAGAACAGAATCGAAGCATCGATTGTGATAT 1054
Query 1484 GGAAGAGGAAAATGGTGCAGAAGGACACAAAGTCTCCTTGGGGATCAACAGTGAGTATTG 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GGAAGAGGAAAATGGTGCAGAAGGACACAAAGTCTCCTTGGGGATCAACAGTGAGTATTG 1114
Query 1544 AGAAAAGAGAACAGTTTGAAGAAAGAGCTGAAACCATCTTGCTACTATTAAAACAAGGGT 1603
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1115 AGAAAAGAGAACAGTTTGAAGAGAGAGCTGAAACAATCTTGCTACTATTGAAACAAGGGT 1174
Query 1604 TTCCCGGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAACAGAGATGTAG 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TTCCCGGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAACAGAGATGTAG 1234
Query 1664 GACTTGCGATATTGGAGAGTTATTCAAGAGTGCTTGAGAGTTTAGCTCACACCGTGATGT 1723
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1235 GACTTGCAATCTTGGAGAGTTACTCAAGAGTGCTTGAGAGTTTGGCTCACACCGTGATGT 1294
Query 1724 CGAGAATAGAAGACGTGCTTTACGCTGATCAGCTTACTCAAGAACCTACAAATAATGCAC 1783
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1295 CGAGAATAGAAGACGTCCTTTACGCTGACCAGCTTACTCAAGAACCTACAAATAATGCAC 1354
Query 1784 CTTCTAAGAACAGATATAGCTTGAAGGAGAATGAGAAACTAAGAGAGGAAAGACTAAGTT 1843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1355 CTTCTAAGAACAGATATAGCTTGAAGGAGAATGAGAAACTAAGGGAGGAAAGACTAAGTT 1414
Query 1844 TCACAGAGGATATGGCTTCAGGAACACTTTCTGATGTTATGCAATGGGGTAACAAAAACA 1903
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1415 TCACAGAGGATATGGCTTCAGGAACACTTTCTGATGTAATGCAATGGGGTAACAAAAACA 1474
Query 1904 ATGAAATGAAGAAAGAAAGCTTTTTCGGAGATAGAGAGAAACCGTTGTTGTCGAAAGTCA 1963
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 ACGAATTGAAGAAAGAAAGCTTTTTCGGAGATAGAGAGAAACCGTTGTTGTCGAAAGTCA 1534
Query 1964 CAGGTATAATGACTAACAACAAGAAGAGTTCTTATCTTGATAATCTTGGAGCTATGAGGA 2023
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1535 CCGGTATAATGACTAACAACAAGAAGAGTTCTTATCTTGAAAATCTTGGAGCTATGAGGA 1594
Query 2024 GTCCAACCGCAAGATACTCCTGA 2046
|||||||||| ||||||||||||
Sbjct 1595 GTCCAACCGCGAGATACTCCTGA 1617
> Ahg474342 jgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1
Length=671
Score = 527 bits (285), Expect = 1e-148
Identities = 378/418 (90%), Gaps = 25/418 (6%)
Strand=Plus/Plus
Query 1 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAAT-GCTTATACGT-ACA--T-T--TC 53
|||||||||||||||||||||||||||||||||||| | |||||| | | | | | ||
Sbjct 13 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAATAG-TTATAC-TAATATTTATCATC 70
Query 54 TTCTTGAAAAGACTTTGAATCCAAGAACCCGTGAGGAAG----T--AATC----C-CAGT 102
||||||||||||||||| ||||||||||||||||||||| | |||| | ||||
Sbjct 71 TTCTTGAAAAGACTTTGCATCCAAGAACCCGTGAGGAAGTAATTGAAATCTAAACTCAGT 130
Query 103 GAAGAGAAGACGACAAAGAAAAAGGAGCCTATAAAGATCCAAAGCTTCCCTTGTCTTTAG 162
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 131 GAAGAGAAGACGACAAAGAAAAAGGAGTCTATAAAGATCCAAAGCTTTCCTTGTCCTTAT 190
Query 163 TTCTCATCaaaaaaaTTGAAAAACGTTTGGAGTTATTgagagagagagagatagagaAAG 222
|||||| | | |||| |||||||||||| ||||| || |||||||||||||||||||
Sbjct 191 TTCTCAGC-AGAAAACTGAAAAACGTTTTGAGTT-TT---TGAGAGAGAGATAGAGAAAG 245
Query 223 ATGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAA 305
Query 283 GCTATGGCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAATCCATT 342
|||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 306 GCTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAATCCATT 365
Query 343 GCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 423
> Ahg479066 jgi|Araly1|479066|fgenesh2_kg.3__1767__AT3G16120.1
Length=625
Score = 222 bits (120), Expect = 7e-57
Identities = 162/182 (89%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 219 AAAGATGTTGGAAGGCAAAGC-AATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGA 277
||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||| |
Sbjct 273 AAAGATGTTGGAAGGGAAAGCGAA-GGTGGAAGAGACAGACATGCCAGTGAAGATGCAAA 331
Query 278 TGCAAGCTATG-GCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAA 336
||||||| ||| | | ||||||||||| |||| || ||||||||||||||||||| ||
Sbjct 332 TGCAAGCAATGAGGA-TTGCTTCTCAATCTCTCGATCTTTTTGATGTCTTTGACTCTATT 390
Query 337 TCCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGT 396
|| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 391 TCTATCGCTGCTCACATCAAGAAGGAGTTTGATGAGAGATATGGAAGTGGATGGCAATGT 450
Query 397 GT 398
||
Sbjct 451 GT 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5