BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52240.1 Length=2046 Score E Sequences producing significant alignments: (Bits) Value Ahg337379 jgi|Araly1|337379|fgenesh1_pg.C_scaffold_1003944 2641 0.0 Ahg474342 jgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1 527 1e-148 Ahg479066 jgi|Araly1|479066|fgenesh2_kg.3__1767__AT3G16120.1 222 7e-57 > Ahg337379 jgi|Araly1|337379|fgenesh1_pg.C_scaffold_1003944 Length=1617 Score = 2641 bits (1430), Expect = 0.0 Identities = 1533/1583 (97%), Gaps = 6/1583 (0%) Strand=Plus/Plus Query 464 ATTTCAATGATAACATGAACGAAAACTCAGCTTCAAGACATGTTAAAAGCTGGAGCTCAG 523 ||||||| | ||||||||||| |||||||||||||||||| ||||||| |||||||||| Sbjct 41 ATTTCAA-G--AACATGAACGAGAACTCAGCTTCAAGACATATTAAAAGTTGGAGCTCAG 97 Query 524 ATTGTGCAATGAGAATGGATGGTTCTGACAATTTGgatgatgatgataatgacatgatga 583 ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 98 ATTGTGCAATGAGAATGGATGGTTCAGACAATTT-G--GATGATGATAATGACATGATGA 154 Query 584 tgTTTAGGAGTCAACCCGGAAAATGTGGCAGCGTTGACCGACCTTCTTTGCCTATAGGCG 643 |||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||| Sbjct 155 TGTTTAGGAGTCAACCGGGCAAATTTGGCAGCGTTGACCGACCTTCTTTGCCTCTAGGCG 214 Query 644 GAGTAACGCCTAATCGCAATGACAAGCTTCCGAGAGTCTCTTCATCGGATTCCATGGAGG 703 ||||||| ||||| ||||| |||||||||||||||||| |||||||||| |||||||||| Sbjct 215 GAGTAACACCTAACCGCAACGACAAGCTTCCGAGAGTCGCTTCATCGGAATCCATGGAGG 274 Query 704 CACTAATAATATTGCAAGCAGCAATGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTC 763 ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 CACTATTAGTATTACAAGCAGCAATGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTC 334 Query 764 TTGGAGAAGATATGTCAGGAGGAGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACG 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 TTGGAGAAGATATGTCAGGAGGAGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACG 394 Query 824 CCATTACCAATCTCGCAGCGTCTGCGTTTGGAGAACAACGGCGTTTAGAGCCAATGGCGG 883 |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 395 CCATTACCAACCTCGCAGCTTCTGCATTTGGAGAACAACGGCGTTTAGAGCCAATGGCGG 454 Query 884 TGGATAGAAAAACGCGTTGGAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATTATA 943 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 455 CGGATAGAAAAACGCGTTGGAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATCATA 514 Query 944 TAGTTGAATTCGCTCCAACACAACAAACAAACAAAGATGGTACTTCAATGGAAGTCATGT 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 TAGTTGAATTCGCTCCAACACAACAAACAAACAAAGATGGTACTTCAATGGAAGTCATGT 574 Query 1004 CAACAAGACAAAGAACAGATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTA 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 CAACAAGACAAAGAACAGATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTA 634 Query 1064 TGCTTCTCGATTGTCTTGATAAATTCAAGGATCAGGATGAGTTTTATTATGTTAAAAAAG 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 635 TGCTTCTCGATTGTCTTGATAAATTCAAGGATCAGGATGAGTTTTATTATGTCAAAAAAG 694 Query 1124 ATTCTCCTGATTCTTGCGAGACAAGGAACGATGAGAAATGGTGGTTACCGGCAGTAAAAG 1183 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 ATTCTCCTGATTCTTCCGAGACAAGGAACGATGAGAAATGGTGGTTACCGGCAGTAAAAG 754 Query 1184 TCCCACCTAACGGCCTCTCAGAGATATCAAGAAGGTTTCTACAGAGCCAGAAGGAATGTG 1243 ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 755 TCCCACCTAACGGGCTCTCAGAGATATCGAGAAGGTTTCTCCAGAGCCAGAAGGAATGTG 814 Query 1244 TGAATCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGTCTGAAATGGAGA 1303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 TGAATCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGTCTGAAATGGAGA 874 Query 1304 TTCCTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAGCTTGGGAGATGTGA 1363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 TTCCTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAGCTTGGGAGATGTGA 934 Query 1364 TATACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTAATTGAAATGGATT 1423 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 935 TATACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTTATTGAAATGGATT 994 Query 1424 TATCATCTGAGCACAAGATTCTTGATCTAAAGAACAGAATCGAAGCATCGATTGTGATAT 1483 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 995 TATCATCTGAGCACAAGATTCTTGATTTAAAGAACAGAATCGAAGCATCGATTGTGATAT 1054 Query 1484 GGAAGAGGAAAATGGTGCAGAAGGACACAAAGTCTCCTTGGGGATCAACAGTGAGTATTG 1543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 GGAAGAGGAAAATGGTGCAGAAGGACACAAAGTCTCCTTGGGGATCAACAGTGAGTATTG 1114 Query 1544 AGAAAAGAGAACAGTTTGAAGAAAGAGCTGAAACCATCTTGCTACTATTAAAACAAGGGT 1603 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 1115 AGAAAAGAGAACAGTTTGAAGAGAGAGCTGAAACAATCTTGCTACTATTGAAACAAGGGT 1174 Query 1604 TTCCCGGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAACAGAGATGTAG 1663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1175 TTCCCGGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAACAGAGATGTAG 1234 Query 1664 GACTTGCGATATTGGAGAGTTATTCAAGAGTGCTTGAGAGTTTAGCTCACACCGTGATGT 1723 ||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1235 GACTTGCAATCTTGGAGAGTTACTCAAGAGTGCTTGAGAGTTTGGCTCACACCGTGATGT 1294 Query 1724 CGAGAATAGAAGACGTGCTTTACGCTGATCAGCTTACTCAAGAACCTACAAATAATGCAC 1783 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1295 CGAGAATAGAAGACGTCCTTTACGCTGACCAGCTTACTCAAGAACCTACAAATAATGCAC 1354 Query 1784 CTTCTAAGAACAGATATAGCTTGAAGGAGAATGAGAAACTAAGAGAGGAAAGACTAAGTT 1843 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1355 CTTCTAAGAACAGATATAGCTTGAAGGAGAATGAGAAACTAAGGGAGGAAAGACTAAGTT 1414 Query 1844 TCACAGAGGATATGGCTTCAGGAACACTTTCTGATGTTATGCAATGGGGTAACAAAAACA 1903 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1415 TCACAGAGGATATGGCTTCAGGAACACTTTCTGATGTAATGCAATGGGGTAACAAAAACA 1474 Query 1904 ATGAAATGAAGAAAGAAAGCTTTTTCGGAGATAGAGAGAAACCGTTGTTGTCGAAAGTCA 1963 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1475 ACGAATTGAAGAAAGAAAGCTTTTTCGGAGATAGAGAGAAACCGTTGTTGTCGAAAGTCA 1534 Query 1964 CAGGTATAATGACTAACAACAAGAAGAGTTCTTATCTTGATAATCTTGGAGCTATGAGGA 2023 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1535 CCGGTATAATGACTAACAACAAGAAGAGTTCTTATCTTGAAAATCTTGGAGCTATGAGGA 1594 Query 2024 GTCCAACCGCAAGATACTCCTGA 2046 |||||||||| |||||||||||| Sbjct 1595 GTCCAACCGCGAGATACTCCTGA 1617 > Ahg474342 jgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1 Length=671 Score = 527 bits (285), Expect = 1e-148 Identities = 378/418 (90%), Gaps = 25/418 (6%) Strand=Plus/Plus Query 1 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAAT-GCTTATACGT-ACA--T-T--TC 53 |||||||||||||||||||||||||||||||||||| | |||||| | | | | | || Sbjct 13 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAATAG-TTATAC-TAATATTTATCATC 70 Query 54 TTCTTGAAAAGACTTTGAATCCAAGAACCCGTGAGGAAG----T--AATC----C-CAGT 102 ||||||||||||||||| ||||||||||||||||||||| | |||| | |||| Sbjct 71 TTCTTGAAAAGACTTTGCATCCAAGAACCCGTGAGGAAGTAATTGAAATCTAAACTCAGT 130 Query 103 GAAGAGAAGACGACAAAGAAAAAGGAGCCTATAAAGATCCAAAGCTTCCCTTGTCTTTAG 162 ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| Sbjct 131 GAAGAGAAGACGACAAAGAAAAAGGAGTCTATAAAGATCCAAAGCTTTCCTTGTCCTTAT 190 Query 163 TTCTCATCaaaaaaaTTGAAAAACGTTTGGAGTTATTgagagagagagagatagagaAAG 222 |||||| | | |||| |||||||||||| ||||| || ||||||||||||||||||| Sbjct 191 TTCTCAGC-AGAAAACTGAAAAACGTTTTGAGTT-TT---TGAGAGAGAGATAGAGAAAG 245 Query 223 ATGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAA 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 ATGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAA 305 Query 283 GCTATGGCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAATCCATT 342 |||||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 306 GCTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAATCCATT 365 Query 343 GCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 GCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 423 > Ahg479066 jgi|Araly1|479066|fgenesh2_kg.3__1767__AT3G16120.1 Length=625 Score = 222 bits (120), Expect = 7e-57 Identities = 162/182 (89%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 219 AAAGATGTTGGAAGGCAAAGC-AATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGA 277 ||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||| | Sbjct 273 AAAGATGTTGGAAGGGAAAGCGAA-GGTGGAAGAGACAGACATGCCAGTGAAGATGCAAA 331 Query 278 TGCAAGCTATG-GCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAA 336 ||||||| ||| | | ||||||||||| |||| || ||||||||||||||||||| || Sbjct 332 TGCAAGCAATGAGGA-TTGCTTCTCAATCTCTCGATCTTTTTGATGTCTTTGACTCTATT 390 Query 337 TCCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGT 396 || || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 391 TCTATCGCTGCTCACATCAAGAAGGAGTTTGATGAGAGATATGGAAGTGGATGGCAATGT 450 Query 397 GT 398 || Sbjct 451 GT 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76942294900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5