BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52280.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474344 jgi|Araly1|474344|fgenesh2_kg.1__4298__AT1G52280.1 1240 0.0
Ahg489823 jgi|Araly1|489823|fgenesh2_kg.6__2957__AT4G09720.1 274 9e-73
Ahg912129 jgi|Araly1|912129|Al_scaffold_0001_2383 241 9e-63
Ahg891768 jgi|Araly1|891768|Al_scaffold_0007_3754 76.8 3e-13
> Ahg474344 jgi|Araly1|474344|fgenesh2_kg.1__4298__AT1G52280.1
Length=796
Score = 1240 bits (671), Expect = 0.0
Identities = 721/745 (97%), Gaps = 4/745 (1%)
Strand=Plus/Plus
Query 63 gaaagaag-aaaacagagaCAGTTTCTTCGCTGAAAAGAAAAACC-AAATCAGCTAAATC 120
||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 19 GAAAG-AGAAAAACAGAGACAGTTTCTTCGCTGAAAAGAAAAACCAAAAT-AGCTAAATC 76
Query 121 CCTAAAAGTTTCCGTCAATGTCTTCTCGCCGGAGAGTTCTTCTCAAGGTTATCATTCTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CCTAAAAGTTTCCGTCAATGTCTTCTCGCCGGAGAGTTCTTCTCAAGGTTATCATTCTCG 136
Query 181 GTGATAGCGGTGTTGGGAAGACTTCGTTGATGAATCAGTTTGTGAATCGAAAGTTTAGTA 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GTGATAGCGGGGTTGGGAAGACTTCGTTGATGAATCAGTTTGTGAATCGAAAGTTTAGTA 196
Query 241 ATCAGTATAAAGCTACGATTGGAGCAGATTTTTTGACTAAAGAGGTTCAAATAGATGACA 300
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 197 ATCAGTATAAAGCGACGATTGGAGCAGATTTTTTGACTAAAGAGGTTCAAATTGATGACA 256
Query 301 GAATCTTCACTTTACAGATTTGGGATACTGCTGGACAAGAAAGATTTCAAAGTTTGGGAG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 257 GAATCTTCACTTTACAGATTTGGGATACTGCTGGGCAAGAAAGATTTCAAAGTTTGGGAG 316
Query 361 TTGCGTTTTACCGAGGAGCGGATTGTTGTGTTCTTGTCTATGATGTCAATGTTATGAAAT 420
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 317 TCGCGTTTTACCGAGGAGCGGATTGTTGTGTTCTTGTGTATGATGTCAATGTTATGAAAT 376
Query 421 CTTTTGATAATCTTAATAACTGGAGGGAAGAGTTCTTGATTCAGGCTAGTCCTTCAGATC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 377 CTTTTGATAATCTTAATAACTGGAGGGAAGAGTTCTTGATTCAGGCTAGTCCATCGGATC 436
Query 481 CTGAAAACTTTCCATTTGTTGTGTTGGGGAACAAGACTGATGTTGATGGTGGAAAGAGCA 540
||||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||
Sbjct 437 CTGAAAACTTTCCGTTTGTCGTGTTGGGGAACAAAACCGATGTTGACGGTGGCAAGAGCC 496
Query 541 GAGTGGTTTCTGAGAAAAAGGCAAAGGCATGGTGTGCATCTAAAGGAAACATTCCTTACT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GAGTGGTTTCTGAGAAAAAGGCAAAGGCATGGTGTGCATCTAAAGGAAACATTCCTTACT 556
Query 601 TTGAGACTTCCGCCAAAGAAGGATTCAATGTAGATGCGGCTTTCGAATGCATTACCAAAA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 557 TTGAGACTTCCGCCAAAGAAGGATTCAATGTAGATGCGGCTTTCGAATGCATAACCAAAA 616
Query 661 ATGCTTTCAAGAATGAACCTGAAGAAGAACCGTACCTTCCCGACACCATTGATGTTGCCG 720
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 617 ATGCATTCAAGAATGAACCTGAAGAGGAACCGTACCTTCCCGACACCATTGATGTTGCCG 676
Query 721 GAGGTCAGCAACAAAGATCAACAGGGTGTGAATGCTAATCAAGCAAAAGTTTGTTGCAGA 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 677 GAGGTCAGCAACAAAGATCAACAGGGTGTGAATGCTAATCAAGCAAAACTTTGTTGCAGA 736
Query 781 TACATTGTTTTGTTTGGCACATTTT 805
|| ||||||||||||||||||||||
Sbjct 737 TATATTGTTTTGTTTGGCACATTTT 761
Score = 65.8 bits (35), Expect = 6e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 856 TTTTGAGTTACAGATTGTAATGAATTGGGTTCCTTTTT 893
|||||| |||||||||||||||||||||||||||||||
Sbjct 759 TTTTGAATTACAGATTGTAATGAATTGGGTTCCTTTTT 796
> Ahg489823 jgi|Araly1|489823|fgenesh2_kg.6__2957__AT4G09720.1
Length=979
Score = 274 bits (148), Expect = 9e-73
Identities = 400/517 (77%), Gaps = 36/517 (7%)
Strand=Plus/Plus
Query 162 CTCAAGGTTATCATTCTCGGTGATAGCGGTGTTGGGAAGACTTCGTTGATGAATCAGTTT 221
|||||||| || | |||||||| || || ||||| || || || ||||||||||| | |
Sbjct 194 CTCAAGGTCATTGTCCTCGGTGACAGTGGGGTTGGTAAAACCTCCTTGATGAATCAATAT 253
Query 222 GTGAATCGA-AAGTTTAGTAAT-CAGTATAAAGCTACGATTGGAGCAGATTTTTTGACTA 279
||| || | ||||||||| || ||||||||||| |||||||| || |||||| | || |
Sbjct 254 GTGCAT-AAGAAGTTTAGT-ATGCAGTATAAAGCAACGATTGGTGCTGATTTTGTAACCA 311
Query 280 AAGAGGTTCAAATAGATG-ACAGAATCTTCACTTTACAGATTTGGGATACTGCTGGACAA 338
| ||| |||| || | | | || | || ||| | ||||||||||||||||||||||||
Sbjct 312 AGGAGCTTCAGATTGGGGAAAAGCTTGTT-ACTCTCCAGATTTGGGATACTGCTGGACAA 370
Query 339 GAAAGATTTCAAAGT-TTGGGAGTTGCGTTTTACCGAGGAGCGGATTGTTGTGTTCTTG- 396
||||||||||| ||| |||| | ||| |||||| ||||||| |||||||||| | |||
Sbjct 371 GAAAGATTTCAGAGTCTTGGT-GCTGCTTTTTACAGAGGAGCTGATTGTTGTGCT-TTGG 428
Query 397 TCTATGATGTCAATGT-TATGAAATCTTTTGATAATCTTAATAACT-GG-AGGGAAGAGT 453
| |||||||| ||||| | ||| |||||||| ||||| | |||| || | | ||||||
Sbjct 429 TTTATGATGTTAATGTGT-TGAGGTCTTTTGACAATCTCGA-AACTTGGCACG-AAGAGT 485
Query 454 T-CTTGATTCAGGCTAGTCCTTCAGATCCTGAAA-AC-TTTCCATTTGTTGTG-TTGGGG 509
| ||| | ||||| ||||| |||||||| ||| || ||||| ||| | ||| ||||
Sbjct 486 TTCTTAAA-CAGGCAAGTCCATCAGATCC--AAAGACATTTCCGTTTATAGTGCTTGGA- 541
Query 510 AACAAGACTGATGTTGATGGTGGAAAG-AGCAGAGTGGTTTCTGAGAA-AAAGGCAAAGG 567
|||||| ||| || ||||| || | | || |||||||| |||||||| |||| || |
Sbjct 542 AACAAGGTTGACGTAGATGGAGGGA-GCAGTAGAGTGGTCTCTGAGAAGAAAG-CAGCTG 599
Query 568 -CATGGTGTGCATCTAAA-GGAAACATTCCTTACTTTGAGACTTCCGCCAAAGAAGGA-T 624
| |||||||| || ||| || || ||||| || |||||||| || || ||||||| | |
Sbjct 600 AC-TGGTGTGCTTC-AAATGGTAATATTCCCTATTTTGAGACCTCAGCAAAAGAAG-ACT 656
Query 625 TCAATGTAGATGCGGCTTTCG-AATGCATTACCAAAA 660
||||||| |||| ||| ||| || |||| ||||||
Sbjct 657 TCAATGTTGATGAGGCATTCTTAAC-CATTGCCAAAA 692
> Ahg912129 jgi|Araly1|912129|Al_scaffold_0001_2383
Length=618
Score = 241 bits (130), Expect = 9e-63
Identities = 380/495 (77%), Gaps = 40/495 (8%)
Strand=Plus/Plus
Query 162 CTCAAGGTTATCATTCTCGGTGATAGCGGTGTTGGGAAGACTTCGTTGATGAATCAGTTT 221
||||| ||||||||||| || || ||||| ||||| || || |||||||||||||| | |
Sbjct 25 CTCAAAGTTATCATTCTTGGAGACAGCGGGGTTGGCAAAACATCGTTGATGAATCAATAT 84
Query 222 GTGAATCGA-AAGTTTAGTAATCAGTATAAAGCTACGATTGGAGCAGATTTTTTGACTAA 280
|||||| | ||||||||| | ||||| ||||||||||| ||||| |||||| | |||||
Sbjct 85 GTGAAT-AACAAGTTTAGTCAGCAGTACAAAGCTACGATCGGAGCTGATTTTGTCACTAA 143
Query 281 AGAGGTTCAAATAGATGACAGAATCT-TCACTTTACAGATTTGGGATACTGCTGGACAAG 339
||| ||||||| |||||||| | | |||| ||||| || ||||| |||||||| ||||
Sbjct 144 GGAGCTTCAAATTGATGACAGGCT-TGTCACATTACAAATATGGGACACTGCTGGGCAAG 202
Query 340 AAAGATTTCAAAGT-TTGGGAGTTGCGTTT-TACCGAGGAGCGGATTGTTGTGTTCTTGT 397
| || ||||||||| || || ||||| ||| || |||| || |||||||||||||||||
Sbjct 203 AGAGGTTTCAAAGTCTT-GGTGTTGC-TTTCTATAGAGGTGCAGATTGTTGTGTTCTTGT 260
Query 398 CTATGATGTCAATGTTA-T-GAAATCTTTTGATAATCTTAATAACTGG-AGGGAAGAGTT 454
||||||||||||| | | | ||| || |||||| ||| | || ||| | | | |||||
Sbjct 261 CTATGATGTCAAT-T-ACTTGAAGTCGTTTGATTCTCTCGACAATTGGCACG-ACGAGTT 317
Query 455 -CTTGATTCAGGCTAGTCCTTCA-GATCCTGAAAA-CTTTCCATTTGT-TG-TGT-TGGG 508
||| | | ||||||||| | ||||| || | |||| ||| | | | | | ||
Sbjct 318 TCTTAAA-CGGGCTAGTCCA-CGTGATCC--AATGGCATTCCCTTT-TATACT-TCTCGG 371
Query 509 GAACAAGACTGATGTTGATGGTGGAAAGAGCAGAGTGGTTTCTGAGAA-AAAGGCAA-AG 566
|| ||| |||| ||||||| ||||| ||| ||||||| ||||| || |||| | | ||
Sbjct 372 TAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGATAAGAAAG-CTAGAG 430
Query 567 GCATGGTGTGCATCTAAAGG-AAACAT--TCCTTACTTT-GAGACTTCCGCCAAAGAAGG 622
||||||||| | ||||| |||||| || | | ||| ||||| || || ||||| |
Sbjct 431 A-ATGGTGTGC-TGAAAAGGGAAACATAGTC-T-A-TTTCGAGACATCGGCTAAAGA-GA 484
Query 623 ATT-CAATGTAGATG 636
||| |||||| ||||
Sbjct 485 ATTACAATGTCGATG 499
> Ahg891768 jgi|Araly1|891768|Al_scaffold_0007_3754
Length=669
Score = 76.8 bits (41), Expect = 3e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 307 TCACTTTACAGATTTGGGATACTGCTGGACAAGAAAGATTTCAAAGT 353
|||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 272 TCACTTTACAAATTTGGGATACTGCTGGACAAGAAAGATTTCACAGT 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5