BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52290.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474345 jgi|Araly1|474345|fgenesh2_kg.1__4299__AT1G52290.1 1949 0.0
> Ahg474345 jgi|Araly1|474345|fgenesh2_kg.1__4299__AT1G52290.1
Length=1791
Score = 1949 bits (1055), Expect = 0.0
Identities = 1274/1374 (93%), Gaps = 38/1374 (3%)
Strand=Plus/Plus
Query 434 ATAATCTTCAGCAATGGAGTTCATCAGAGATTGGACAAAACTTGTTTACATATGAAGATT 493
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 449 ATAATCTTCAGCAATGGGGTTCATCAGAGATTGGACACAACTTGTTTACATATGAAGATT 508
Query 494 TGTCTAAAGCAACTAGTAACTTCTCCAACACTAACCTTCTTGGACAAGGTGGGTTTGGTT 553
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 509 TGTCTAAAGCAACTAGTAACTTCTCCAACACTAACCTTATTGGACAAGGTGGGTTTGGTT 568
Query 554 ATGTTCATAGAGGAGTTCTTGTTGATGGAACTTTGGTTGCTATTAAGCAGCTTAAATCTG 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 569 ATGTTCATAGAGGAGTTCTTGTTGATGGAACTTTGGTTGCTATTAAGCAGCTTAAAGCTG 628
Query 614 GAAGTGGACAAGGTGAACGAGAGTTTCAAGCTGAGATACAGACTATTAGTAGAGTTCATC 673
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 629 GAAGTGGACAAGGTGAACGAGAGTTTCAAGCTGAGATACAAACTATTAGTAGAGTTCATC 688
Query 674 ATAGGCATCTTGTTTCTCTTCTTGGTTATTGTATCACTGGTGCTCAAAGATTGCTTGTTT 733
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 689 ATAGGCATCTTGTTTCTCTTCTTGGTTATTGTATCACTGGAGCTCAAAGATTACTTGTTT 748
Query 734 ATGAGTTTGTGCCTAATAAGACTCTCGAATTTCATTTACACGAGAAAGAGAGACCGGTAA 793
||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||
Sbjct 749 ATGAGTTTGTGCCTAATAAGACTCTAGAGTTTCATTTGCACGAGAAAGGGAGACCGGTAA 808
Query 794 TGGAGTGGTCAAAGAGGATGAAGATTGCTTTGGGTGCAGCTAAAGGATTGGCATACTTAC 853
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TGGAGTGGTCCAAGAGGATGAAGATTGCTTTGGGTGCAGCTAAAGGATTGGCATACTTAC 868
Query 854 ATGAAGATTGTAATCCTAAGACAATACACCGCGATGTCAAGGCTGCAAATATTCTAATTG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 869 ATGAAGATTGTAATCCTAAGACAATACACCGCGATGTCAAGGCTGCAAATATTCTGATCG 928
Query 914 ACGATAGCTATGAGGCGAAGTTAGCAGATTTTGGACTTGCCAGGTCTTCTTTAGACACTG 973
| ||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 929 ATGATAGCTTTGAGGCGAAGCTAGCAGATTTTGGACTCGCCAGGTCTTCTTTGGACACTG 988
Query 974 ATACTCATGTCTCCACTCGGATTATGGGAACCTTCGGTTACTTGGCTCCTGAATATGCTT 1033
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 989 ATACTCATGTTTCCACTCGGATAATGGGAACATTCGGTTACTTGGCTCCTGAATATGCTT 1048
Query 1034 CTTCAGGGAAACTTACTGAGAAATCAGATGTCTTCTCAATTGGAGTGGTGCTTCTTGAAC 1093
|||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1049 CTTCTGGGAAACTCACTGATAAATCAGATGTCTTCTCATTTGGAGTGGTGCTTCTTGAAT 1108
Query 1094 TGATAACCGGACGCCGTCCTGTTGATAAATCACAGCCTTTTGCTGATGATGATAGCATCG 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TGATAACCGGACGCCGTCCTGTTGATAAATCACAGCCTTTTGCTGATGATGATAGCATCG 1168
Query 1154 TTGATTGGGCAAAACCTCTGATGATACAAGCGT-TAAACGATGGAAACTTTGACGGTCTT 1212
|||||||||| ||||||||||||||||||| | |||||||||| |||||||| ||||||
Sbjct 1169 TTGATTGGGCGAAACCTCTGATGATACAAGT-TCTAAACGATGGCAACTTTGATGGTCTT 1227
Query 1213 GTTGACCCGCGGTTAGAGAATGATTTTGATATCAACGAAATGACGAGAATGGTTGCTTGC 1272
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1228 GTTGACCCGCGGTTAGAGAATGACTTTGATATCAACGAAATGACGAGAATGGTTGCTTGC 1287
Query 1273 GCTGCTGCTAGTGTCCGTCATTCAGCTAAACGTCGCCCAAAAATGAGCCAGATAGTTCGA 1332
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1288 GCTGCTGCTAGTGTCCGTCATTCAGCCAAACGCCGCCCAAAAATGAGCCAGATAGTTCGA 1347
Query 1333 GCATTCGAAGGAAATATATCTATAGATGACCTAACAGAAGGAGCTGCCCCAGGACAAAGT 1392
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1348 GCATTCGAAGGAAACATATCTATAGATGACCTAACAGAAGGAGCTGCTCCAGGACACAGC 1407
Query 1393 ACTATTTACAGCTTAGACGGGAGCTCAGATTATAGCTCAACACAATACAAAGAAGACTTG 1452
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1408 ACTATCTACAGCTTAGACGGGAGCTCAGATTATAGCTCGACACAATACAAAGAAGACTTG 1467
Query 1453 AAGAAATTCAAGAAAATGGCG-TTCGAAAGCAAAACATTTGGTAGCAGCGAATGCAGTGG 1511
|||||||||||||||||||| || |||||| | ||||||||||||||||| || || ||
Sbjct 1468 AAGAAATTCAAGAAAATGGCACTT-GAAAGCCAGACATTTGGTAGCAGCGAGTGTAGCGG 1526
Query 1512 TTTGACTAGCGACAATGGTCAGAACCCATCAGGCTCGTCTAGTATCACCGAAGGCCAACG 1571
||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 1527 TTTGACTAGCGACAACGGTCAGAACCCATCAGTCTCGTCTAGCATCACTGAAGGCCAACG 1586
Query 1572 TACAACGCAGGAGATCGAACCGGAGAAGAATACCAAGGACACA-TGAACTTTAAA-CAGA 1629
||||||||| |||||||||||||||| ||| |||||||| ||| | ||||| ||| ||||
Sbjct 1587 TACAACGCAAGAGATCGAACCGGAGATGAAAACCAAGGAGACAAT-AACTTAAAAACAGA 1645
Query 1630 GGATTCTTGGTAATAGTTAAGTCTTATCATTTTGGGGTAGGACCCGTAGGTTTAGGTGTA 1689
||||||||||||||| | || ||| |||||||| | || |||||||
Sbjct 1646 GGATTCTTGGTAATA-------C--AT--TTT-GGGGTAGG-----T---TT-AGGTGTA 1684
Query 1690 AA-ACACATTATTCATTAGACGCGCTTTCACTTTTAATTATT-TCCATGTGTGGCTCTAA 1747
|| | ||| ||| |||| ||||| |||||||||| || || || ||||||||||||||
Sbjct 1685 AACAAACAC-ATT-ATTA--CGCGCCTTCACTTTTA-TT-TTCTC-ATGTGTGGCTCTAA 1737
Query 1748 TCGAAACTGTCATGAGCCTGATATT-GCACGTGAATATTATTTGTTGGAGAttt 1800
|| ||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 1738 TCAAAACTGTCATGAGCCTGATTTTTGCACGTGAATATTATTTCTTAGAGATTT 1791
Score = 427 bits (231), Expect = 1e-118
Identities = 309/345 (90%), Gaps = 11/345 (3%)
Strand=Plus/Plus
Query 53 GAAAAACCAAATCATCCTCATCATCTTCTGATCTAATGTCTACCGAC-AC-TATCCCTTC 110
|||||||||||||| ||||||| ||| ||||||||||| | || | | | |||||||
Sbjct 32 GAAAAACCAAATCA---TCATCATTTTCCGATCTAATGTC-ATCGTCTCCGT-TCCCTTC 86
Query 111 CCTCTCATCTCCACCGGCGCCGGAGTTTCCTTCCACCACACCAGACACGGCGACGTCACC 170
||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||
Sbjct 87 ATTCTCATCTCCACCGGCGCCGGAGTTTCTTTCCACCACACAAAACACGGCAACGTCGCC 146
Query 171 AGCTCCGTCTCAGCCATCCATCATCGGACCTTCTTCGTTGGCTCCGTTTCCGGAGACAAC 230
||||||||||||||||||||||| ||||||||||| | || ||||||| |||||||| ||
Sbjct 147 AGCTCCGTCTCAGCCATCCATCAACGGACCTTCTTGGCTGTCTCCGTTCCCGGAGACGAC 206
Query 231 AACAAACATTGATGGAGGCTCGAGAAATGTAGCATTAACTGGACTTATTACTGGAGTAGT 290
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 207 AACAAACATTGATGGAGGCTCGCGAAATGTAGCATTAACTGGACTTATTACTGGAGTAGT 266
Query 291 TCTCGGAGCTACGTTTGTCCT-ACTCGGAGTTTGTATCTTTGTCTGTTTCTATaaaagaa 349
||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 267 TCTCGGAGCTACGATTGTTCTTA-TCGGAGTTTGTATCTTTGTCTGTTTCTATAAAAGAA 325
Query 350 agaagaggaagttaaagaagaagaagaaagaa-gaTATCGAAGCT 393
|| |||||||||| |||| ||||||||| ||| ||||| ||||||
Sbjct 326 AGCAGAGGAAGTTGAAGATGAAGAAGAA-GAAAGATATTGAAGCT 369
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 GTCTTCGTCTTCGTCTTCACTTCCGCCATGAGAAAAACC 39
|||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GTCTTCATCTTCGTCTTCACTTCCGCCATGAGAAAAACC 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5