BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52300.1
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923746 jgi|Araly1|923746|scaffold_105027.1 527 4e-149
Ahg929421 jgi|Araly1|929421|scaffold_301878.1 348 4e-95
> Ahg923746 jgi|Araly1|923746|scaffold_105027.1
Length=336
Score = 527 bits (285), Expect = 4e-149
Identities = 317/333 (95%), Gaps = 0/333 (0%)
Strand=Plus/Plus
Query 62 AAAAAACTCGCATCCGCTTCAATGACTAAGGGAACGGGAAGTTTCGGAAAGAGAAGAAAC 121
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 AAAAAACTCGCATTCGCTTCAATGGGAAAGGGAACGGGAAGTTTCGGAAAGAGAAGAAAC 63
Query 122 AAGAGTCACACACTCTGTGTCAGATGTGGCCGTCGCAGTTTCCACATCCAGAAGAGTCGT 181
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 64 AAGAGTCACACACTCTGTGTCAGATGTGGCCGTCGCAGTTTCCATATCCAGAAGAGCCGT 123
Query 182 TGCTCTGCTTGTGCTTATCCCGCCGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCA 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 124 TGCTCTGCTTGTGCTTATCCCGCAGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCA 183
Query 242 ATCCGTAGAAAGACTACTGGAACTGGAAGGATGAGGTATCTTCGCAATGTGCCTCGCAGG 301
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 184 ATCCGTAGAAAGACTACTGGAACTGGAAGGATGAGGTATCTCCGCAATGTCCCTCGCAGG 243
Query 302 TTCAAGACCGGTTTCAGAGAGGGTACCGAAGCCAAGCCAAGGAACAAGGGAGTTGCTTCA 361
|||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 244 TTCAAGACCGGTTTCAGAGAAGGTACCGAAGCCAAGCCAAGGAACAAGGCAGCAGCTTCA 303
Query 362 TCAGCTTAAACTTGTTTTTGAGCATCAAGGGAG 394
|||||||||||| |||||||||||| ||||||
Sbjct 304 TCAGCTTAAACTGGTTTTTGAGCATTGAGGGAG 336
> Ahg929421 jgi|Araly1|929421|scaffold_301878.1
Length=348
Score = 348 bits (188), Expect = 4e-95
Identities = 267/305 (88%), Gaps = 5/305 (2%)
Strand=Plus/Plus
Query 70 CGC-ATCCGCTTCAATGACTAAGGGAACGGGAAGTTTCGGAAAGAGAAGAAACAAGAGTC 128
||| || |||| ||||| |||||||| ||||||||||| ||||| || ||||||||||
Sbjct 27 CGCAATTCGCTCCAATGGGAAAGGGAACAGGAAGTTTCGGTAAGAGGAGGAACAAGAGTC 86
Query 129 ACACACTCTGTGTCAGATGTGGCCGTCGCAGTTTCCACATCCAGAAGAGTCGTTGCTCTG 188
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 87 ACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCTG 146
Query 189 CTTGTGCTTATCCC-GCCGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCAATCCGT 247
|||| ||||| ||| ||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 147 CTTGCGCTTA-CCCTGCCGCTCGCAAGAGGACTTACAACTGGAGTGAGAAGGCCATCAGG 205
Query 248 AGAAAGACTACTGGAACTGGAAGGATGAGGTATCTTCGCAATGTGCCTCG-CAGGTTCAA 306
|| |||||||| || || ||||||||||||||||| || ||||| || || | |||||||
Sbjct 206 AGGAAGACTACCGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCCCGTC-GGTTCAA 264
Query 307 GACCGGTTTCAGAGAGGGTACCGAAGCCAAGCCAAGGAACAAGGGAGTTGCTTCATCAGC 366
||| || |||||||| ||||| |||||||||||||| ||||||| || |||||||||||
Sbjct 265 GACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGAAACAAGGCAGCAGCTTCATCAGC 324
Query 367 TTAAA 371
|||||
Sbjct 325 TTAAA 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5