BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52310.1
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474346 jgi|Araly1|474346|fgenesh2_kg.1__4300__AT1G52310.1 2758 0.0
> Ahg474346 jgi|Araly1|474346|fgenesh2_kg.1__4300__AT1G52310.1
Length=1910
Score = 2758 bits (1493), Expect = 0.0
Identities = 1749/1874 (93%), Gaps = 12/1874 (1%)
Strand=Plus/Plus
Query 108 AGCGTAAAGTCTGAGTCTTTCTTCCCGATGTTATGACTTAATC-GGTGTTTATGAAGCTG 166
||| ||||||||| ||||||||| | ||||||||||||||| | ||| |||||| |||||
Sbjct 40 AGCATAAAGTCTGCGTCTTTCTTTCAGATGTTATGACTTAA-CGGGT-TTTATGTAGCTG 97
Query 167 TAGTTATGGAGCTGAAGTGGGTTTCTTGTCGGAAACAATCTCTGTTCTTGATCTCTTGTC 226
||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||| |||||||
Sbjct 98 TAGCTATGGAGCTGAAGTGTGTTTTTTGTCAGAAACGATCTCTGTTCTTGATTTCTTGTC 157
Query 227 TGGCTCTGCTTTGTCTCGCGTCCTTGGATACTATATCATGTGAATCAACTCAGAATGCTA 286
|| || ||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |
Sbjct 158 TGACTTTGCTTTGTCTCGCATCCTTGGATACTATATCAAGTGAATCAACTCAAAATGCAA 217
Query 287 CTGACTTCAAGAAACGATCTCAGACAGTTTCTTGCCCTCCTGATTGGATCATTGGACCGA 346
|| | ||||||||| | ||||| | ||||||||||||| ||||||||||||||||| ||
Sbjct 218 CTAATTTCAAGAAAAGCTCTCACAGAGTTTCTTGCCCTTCTGATTGGATCATTGGATTGA 277
Query 347 ACCAAACCAAGTGCTATGCTTACTTTAAAAACTCTACTTCATGGGAGAAGTCAGAAATGT 406
||||||| || ||||||| |||||||| |||||| ||| |||||||||||||||||||||
Sbjct 278 ACCAAACGAAATGCTATGGTTACTTTAGAAACTCCACTACATGGGAGAAGTCAGAAATGT 337
Query 407 TCTGTAGAACTTATGGTGGTCACTTAGCATCGCTTGCATCGAGCAAAGAACTCAGCTTTG 466
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 338 TCTGTAGAACTTATGGCGGTCACTTAGCATCGGTTGCATCGAGCAAAGAACTCAGCTTTG 397
Query 467 TTCAAAAACTATGCAATGGAAATGTTAGCAGTTGTTGGATTGGAGGACGAAGTATGAATT 526
|||| ||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 398 TTCAGAAACTTTGCATTGGAAATGTTAGTGGTTGTTGGATTGGAGGAAGAAGTCTGAATT 457
Query 527 CTTCTACCTCAGGTTTCCGTTGGAGCTGGTCTGATCCTAAGACTCCTCAATGGAACCAAT 586
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 458 CTTCTACCTCCGGTTTCCGTTGGAGCTGGTCTGATCCTAAGACGCCTCAATGGAACCAAT 517
Query 587 CCATGTTTCCTAAAGTTCCAATT-CGCACCCGCTGTGGCAATGGCAACGGCAGTTCATCG 645
|| ||||||||||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct 518 CCTTGTTTCCTAAAGTGCC-ATTACGCACCCGCTGTGGCAATGGCAATGGCAGTTCATCT 576
Query 646 TGTCGTGCTAATATATGTATAGCCGTGACAAATGGTTCATCATCAATATTCGGTGAAAGA 705
|||||||||||||| ||||| ||||||||||| ||||||||| |||| || |||||||||
Sbjct 577 TGTCGTGCTAATATCTGTATGGCCGTGACAAACGGTTCATCACCAATCTTTGGTGAAAGA 636
Query 706 TGTAATGCGTCTCATGCTTTTGTTTGCGCTGTTGATTCTGATATCAAATGTCGCAATTGT 765
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 637 TGTAACGCGTCTCATGCTTTCGTTTGCGCTGTTGATTCTGATATCAAATGTCGCAATTGT 696
Query 766 CACAAATATCTAGTTATCCTCGCTGTTGTCAGCGGTTTGATTCTCTTCACGACATTCGCC 825
|||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 697 CACAAATATCTAATTATCCTCGCCGTTGTCAGCGGTTTGATTCTCTTCACCACATTTGCC 756
Query 826 ATTATATTATGGCTCCTTGTCTATAAGCGAAGCAAGAAACGCCGAAAATCACGAAAAGTA 885
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 757 ATTATATTATGGCTCCTTGTCTACAAACGAAGCAAGAAACGCCGAAAATCACGAAAAGTA 816
Query 886 TCTAATCCAGCTTCATCATCATCAGTAGTTCCTCCTTCATGGAAGATCTTCACTAGTGAA 945
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 817 TCAAATCCAGCTTCTTCATCATCAGTAGTTCCTCCATCATGGAAGATCTTCACTAGTGAA 876
Query 946 GAACTGAGATCAATGACGAAGAACTTCAGTGAAGCAAACCGTCTAGCTGGGGACGCGAAA 1005
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||
Sbjct 877 GAACTGAGATCAATGACGAAGAACTTCAGTGAAGCAAACCGTCTGGCCGGGGATGCAAAA 936
Query 1006 ACCGGTGGAACCTATAGCGGTGGTTTATCAGACGGGACTAAAGTGGCGGTTAAGAGATTG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 937 ACCGGTGGAACCTATAGCGGTGGTTTATCAGACGGGACTAAAGTGGCGGTTAAAAGATTA 996
Query 1066 AAAAGGTCTAGTTTTCAGAGGAAGAAAGAGTTCTACTCCGAGATTAGAAGAGCAGCTAAA 1125
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 997 AAAAGGTCTAGTTTTCAGAGGAAGAAAGAATTCTACTCCGAGATTAGAAGAGCAGCTAAA 1056
Query 1126 CTTTATCACCCGAATGTAGTTGCTATAAAAGGTTGTTGCTATGATCATGGAGAACGTTTC 1185
||| |||||||||||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 1057 CTTCATCACCCGAATGTAGTGGCCATCAAAGGTTGTTGCTATGATCACGGAGAACGTTTC 1116
Query 1186 ATTGTTTATGAGTTCATAGCTAGTGGACCTCTCGATAGATGGCTACACCATGTGCCTAGA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 ATTGTTTATGAGTTCATAGCTAGTGGACCTCTCGATAGATGGCTACACCATGTGCCTAGA 1176
Query 1246 GGTGGTAGAAGCTTGGACTGGAACATGAGATTGAACATCGCCACAACTCTTGCTCAAGGA 1305
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1177 GGTGGTAGGAGCTTGGACTGGAACATGAGATTGAACATCGCCACAACTCTTGCCCAAGGG 1236
Query 1306 ATCGCGTTTCTACACGACAAGGTCAAGCCACAAGTGGTGCACCGCGACATCCGAGCTAGC 1365
|| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1237 ATTGCGTTTCTACATGACAAGGTCAAACCGCAAGTGGTGCACCGCGACATCCGAGCAAGC 1296
Query 1366 AACGTGCTACTTGATGAGGAGTTTGGAGCTCATTTAATGGGTGTTGGTCTCTCAAAATTC 1425
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1297 AACGTGCTACTTGATGAGGAGTTTGGAGCTCATTTAATGGGCGTTGGTCTCTCAAAATTC 1356
Query 1426 GTTCCTTGGGAAGTAATGCAAGAGAGAACCGTAATGGCGGGTGGAACCTACGGTTACCTC 1485
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GTCCCTTGGGAAGTAATGCAAGAGAGAACCGTAATGGCGGGTGGAACCTACGGTTACCTA 1416
Query 1486 GCACCCGAATACGTTTACAGAAACGAGCTAACCACGAAGAGCGATGTCTACAGTTTCGGA 1545
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1417 GCACCCGAATACGTATACAGAAATGAACTAACCACGAAGAGCGATGTCTACAGTTTCGGA 1476
Query 1546 GTCCTTTTGCTTGAGATTGTGAGCGGTCGTAGACCAACTCAGGCTGTTAATTCTTCAGTT 1605
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1477 GTCCTTTTGCTTGAGATTGTGAGCGGTCGTAGACCAACTCAAGCGGTAAATTCTTCAGTT 1536
Query 1606 GGGTGGCAGAGCATATTCGAATGGGCAACACCATTGGTTCAAGCTAACCGTTGGTTAGAG 1665
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1537 GGATGGCAGAGCATATTCGAATGGGCCACACCATTGGTTCAAGCAAACCGTTGGTTAGAG 1596
Query 1666 ATTCTTGATCCGGTTATTACATGCGGTTTACCGGAAGCATGTGTGGTTCAGAAAGTTGTT 1725
||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 1597 ATTCTTGATCCGGTTATAACGTGCGGTTTACCGGAAGCAAGTGTGGTTCAGAAAGTTGTG 1656
Query 1726 GACTTGGTTTATTCTTGTACTCAGAATGTGCCATCAATGCGTCCAAGGATGTCACATGTG 1785
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1657 GACTTGGTTTATTCTTGTACTCAAAATGTGCCATCAATGCGTCCAAGGATGTCACATGTT 1716
Query 1786 GTTCATCAGCTTCAGCAATTGGTCCAACCTTTAGAGGTTAAGTAGTTAA-TTAATTAACA 1844
||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||
Sbjct 1717 GTTCATCAGCTTCAGCAATTGGTCCAACCATTAGAGATTAAGTAGTTAAATTACTTAACA 1776
Query 1845 TAAGTCTTAATAAAACACTTTTTGTTTGACTGTATAATCGAATCTTAGGAGAC-TT---- 1899
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1777 TAAGTCTCAATAAAACACTTTTTGTTTGACTGTATAATCGAATCTTAGGAGACATTTCAT 1836
Query 1900 -GTCACATTACTTTTCATGGAGAAAGTAAAGAAATGTTAGAGCCAAAACCGATGTCGTAT 1958
|||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||
Sbjct 1837 TGTCAAATTACTTTTTATGGAAAAAGTTAAGAAATGTTATAGCCAAAAACGATGTCGTAT 1896
Query 1959 TAAAGAAAGTTCTT 1972
|| |||||||||||
Sbjct 1897 TAGAGAAAGTTCTT 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74352158240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5