BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52315.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337384 jgi|Araly1|337384|fgenesh1_pg.C_scaffold_1003949 1463 0.0
> Ahg337384 jgi|Araly1|337384|fgenesh1_pg.C_scaffold_1003949
Length=1032
Score = 1463 bits (792), Expect = 0.0
Identities = 963/1045 (92%), Gaps = 14/1045 (1%)
Strand=Plus/Plus
Query 25 ATGTTTCTTAGGTGCTTCAAACCCAAGTTCTACAAGAAAAGCAAATCTACAACCAGCTAC 84
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGTTTCTTTGGTGCTTCAAACCCAAGTTCTACAAGAAAAGTAAATCTACAACAAGCTAC 60
Query 85 ATGAAGATTAGGATTGATATAGTTAGGAGAAAAAGGATTGCAATGGTTAGAAATTATAAA 144
|||||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 61 ATGAAGATTAGGCTTGATATAGTGAGGAAAAAAAGGATTGCAATGGTTAAAAATTATAAA 120
Query 145 ACAGATATTGTGAATTTCCTCAAGAATGGCCAAGAT-TCTGAAGCTTATAGAAGAGCAGA 203
||||||||||||||||||||||| |||||||||||| | ||||||||||| |||| ||||
Sbjct 121 ACAGATATTGTGAATTTCCTCAATAATGGCCAAGATAT-TGAAGCTTATAAAAGAACAGA 179
Query 204 ACTTTTACTCGAAGAGCTGAGAATAATATCGTGCTACGATCTCATCGAGCGATTCTGCGA 263
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACTATTACTCGAAGAGCTTAGAATAATATCGTGCTACGATCTCATCGAGCGATTCTGCGA 239
Query 264 TTGTATCTCTGAAAATCTCTCACTAATGCTGAAGAAAAGGGAATGTCCTGAAGAATGCAG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGTATCTCTGAAAATCTCTCACTAATGCTGAAGAAAAGGGAATGTCCTGAAGAATGCAG 299
Query 324 AGAAGCTGTTTCCTCTTTGATATATGCAACGGCATGGGTTCCTGATGTTCCTGAACTTAA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAAGCTGTTTCCTCTTTGATATATGCAACGGCATGGGTTCCTGATGTTCCTGAACTTAA 359
Query 384 GGATCTTAGAGCCGTGTTTACGAAAAGATTTGGGAATTTCATTGCTTCATCTGTAAATCA 443
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 360 AGATCTTAGAGCCGTGTTTACGCGTAGATTTGGGACTTTCATTGCTTCATCTGTAAATCA 419
Query 444 TGAGCTTGTTGAGAAAACTGAATTGTTAAGGCCACCTTCACGGGAACTCAAGATTCAAAC 503
|||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 420 TGAGCTCGTTGAGAAAACTGAATTGCGAAGACTTCCTTCACGGGAACTCAAGATTCAAAC 479
Query 504 AGTGAAAGATGTTGCGAATGAGTTTTCGATTAACTGGGATCCTACACCTTTGAAACTGAT 563
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||| | ||
Sbjct 480 AGTGAAAGATGTTGCGAATGAGTTTTCGATCAATTGGGATCCTACACCTCTGAAAATAAT 539
Query 564 GCTGCTCAGAGAGACTTCAGCTCTGCAGATTAAGGACAAGGTCGAGACAAGAGCGGATTA 623
||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 540 GCTGCTCAGGGAGGGTTCAGCTCTGCAGATTAAGGAAAAGGTCGAGACAAGAGCAGATTA 599
Query 624 TCTGAACAAAGATACAGAGAAAAGTTTCATGGATGAACATAGTGATGATGAATCGGTTCT 683
||||||||||||||||||||||||| | || ||||| || || || ||||||||||||||
Sbjct 600 TCTGAACAAAGATACAGAGAAAAGTATGATAGATGACCAAAGCGAGGATGAATCGGTTCT 659
Query 684 TTCTGAGAGTTGGAGAATAGATTCATTGTCCAAAGGCAGTTTGAGTTCTAGTTCAAGCTC 743
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCAGAGAGTTGGAGAAGAGATTCATTGTCCAAAGGCAGTTTGAGTTCTAGTTCAAGCTC 719
Query 744 GAGCTCGAGTTCTCTTCGAAGGGTATCTGTAAGGAAGAAGAAGGGGAAGAAGATTTTACC 803
||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 720 GAGCTCGAGTTCTCTAAGAAGAGAATCTGTAAGGAAGAAGAAGAGGAAGAAGATTTTACC 779
Query 804 GTACGGAATAATCTCTTCTCCAGACACGAAACTAGGAGCTGGAAACGACgagaaagcaca 863
|||||||||||| || |||||| || | |||||||||| |||||||||||
Sbjct 780 TTACGGAATAATCACTCCTCCAG----GA-----G---CTGGAAACGATGAGAAAGCACA 827
Query 864 agaggagaaagaagagaagagaaagaTTGCTGATCAAGAAAACTCAAGGTTACTTGGAAT 923
|||||||||||||||||| || |||| | ||||||||||||||| ||||||||||||||
Sbjct 828 AGAGGAGAAAGAAGAGAATAGCAAGAGTATTGATCAAGAAAACTCGAGGTTACTTGGAAT 887
Query 924 ACAAGGTAGTAGGAGTCTCACAAGTACAAGCAATAACGAAGTTTCCACAATAAGAGAGAA 983
|||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| |||
Sbjct 888 ACAAGGCGGTAGGAGTCTCACAAGCACAAGCAATAACGAAGTTTCCACAACACGAGGGAA 947
Query 984 CGAGAGAATGTCGTCGTTTCAAAGACCTAACCTCCTTGATTATGATGATGTGGTGGCTCG 1043
|||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 948 CGAGAGAACGTCGTCGTTTCAGAGACCTAAGCTCCTTGATTATGATGATGTGGTGGCTCG 1007
Query 1044 TCTTGCAGCTCTGCGCCGGAGATAA 1068
||||||||||||| ||||||||||
Sbjct 1008 ACTTGCAGCTCTGCACCGGAGATAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5