BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52320.2
Length=2588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474348 jgi|Araly1|474348|fgenesh2_kg.1__4302__AT1G52320.2 3626 0.0
> Ahg474348 jgi|Araly1|474348|fgenesh2_kg.1__4302__AT1G52320.2
Length=2581
Score = 3626 bits (1963), Expect = 0.0
Identities = 2418/2623 (92%), Gaps = 90/2623 (3%)
Strand=Plus/Plus
Query 13 ATCTCTTCTTCTCCGATCGATCTGAAGTAAGAGAGCTTC-------TTAAG--GAAGAAG 63
||||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 1 ATCTCTTCTTCTCTGATCGATCTGAAGTAAGAGAGCTTCGAGAGGAAGAAGACGAAGAAG 60
Query 64 AAGATGGGTTGTGCTCAATCAAAGATCGAGAACGAAGAAGCAGTTACTCGTTGCAAAGAA 123
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAGATGGGTTGTGCTCAATCTAAGATCGAGAACGAAGAAGCTGTTACTCGTTGCAAAGAA 120
Query 124 CGAAAACAATTGATGAAAGACGCCGTCACTGCTCGTAACGCTTTCGCCGCCGCTCACTCA 183
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 121 CGAAAACAGTTGATGAAAGATGCCGTCACAGCTCGTAACGCTTTCGCCGCCGCACACTCA 180
Query 184 GCTTACGCTATGGCTCTTAAAAACACCGGAGCTGCTCTTTCCGATTACTCTCACGGCGAG 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTACGCTATGGCTCTTAAAAACACCGGAGCTGCTCTTTCCGATTACTCTCACGGCGAA 240
Query 244 TTTTTAGTCTCTAATCACTCGTCTTCCTCCGCAGCTGCAGCAATCGCTTCTACTTCTTCT 303
|| ||||||||||||||||| || |||||| | || ||||||||||||||||||||||||
Sbjct 241 TTCTTAGTCTCTAATCACTCATCCTCCTCCTCCGCCGCAGCAATCGCTTCTACTTCTTCT 300
Query 304 CTTCCCACTGCTATATCTCCTCCTCTTCCTTCTTCCACCGCTC-CGGTTTCTAATTCAAC 362
||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||
Sbjct 301 CTTCCCACTGCTATATCTCCTCCTCTTCCTTCTTCTATCGC-CGCTGTTTCTAATTCAAC 359
Query 363 CGCTTCTTCTTCCTCCGCTGCGGTTCCTCAGCCGATTCCTGATACTC-T--tcctcctcc 419
||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 360 CGCTTCTTC-T--TCCGCTGCGGTTCCTCAGCCGATTCCTGATACTCTTCCTCCTCCTCC 416
Query 420 tcctcctccACCACCGCTTCCTCTTCAACGTGCTGCTACTATGCCGGAGATGAACGGTAG 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TCCTCCTCCACCACCGCTTCCTCTTCAACGCGCTGCTACTATGCCGGAGATGAACGGTAG 476
Query 480 ATCCGGTGGTGGTCATGCTGGTAGTGGACTCAACGGAATTGAAGAAGATGGAGCCCTAGA 539
|||||||||||||| | |||||| ||| || || |||||||||||||||||| | |||||
Sbjct 477 ATCCGGTGGTGGTCCTTCTGGTAATGGTCTTAATGGAATTGAAGAAGATGGAACTCTAGA 536
Query 540 TAACgatgatgatgacgatgatgatgatgatgaCTCTGAAATGGAGAATCGTGATCGTTT 599
|||| |||||| ||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 537 TAAC---GATGAT---GATGATGATGATGAT---TCTGAATTGGAGAATCATGATCGTTT 587
Query 600 GATTAGGAAATCGAGAAGCCGTGGAGGTAGTACTAGAGGAAATAGGACGACGATTGAAGA 659
|||||||||||||||||||| || | |||| ||||||||||||||||||
Sbjct 588 GATTAGGAAATCGAGAAGCC------GT-G-----GAGG---TAGGACGACGATTGAAGA 632
Query 660 TCATCATCTTCAGGAGGAGAAAGCTCCGCCACCTCCCCCTTTGGCGAATTCACGGCCAAT 719
|||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||
Sbjct 633 TCATCATCACCAGGAGGAGAAAGCTCCACCACCTCCTCCGGCGGCGAATTCACAGCCAAT 692
Query 720 TCCGCCGCCACGTCAGCATCAGCATCAACATCAGCAACAGCAACAACAACCTTTCTACGA 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 693 TCCGCCGCCACGTCAGCATCAGCATCAACATCAACAACAGCAACAACAACCTTTCTATGA 752
Query 780 TTACTTCTTCCCTAATGTTGAGAATATGCCTGGAACTACTTTAGAAGATACTCCT----- 834
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 753 TTACTTCTTCCCTAATGTTGAGAATATGCCTGGAACTACTTTAGAAGACACTCCTCCACA 812
Query 835 -CCACAACCACAACCACAACCAACAAGGCCTGTGCCTCCTCAACCACATTCACCAGTCGT 893
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 813 ACCACAACCACAACCACAACCAACAAGACCTGTGCCTCCTCAACCACATTCACCAGTCGT 872
Query 894 TACTG-AGGATGACGAAGATgaggaggagga--a-g-ag--ga-g--ga--a-gaggagg 940
|||| |||| || ||||||||||||||||| | | || || | || | |||||||
Sbjct 873 CACTGAAGGA-GAAGAAGATGAGGAGGAGGAGGAGGAAGATGAGGAAGATGAGGAGGAGG 931
Query 941 agga--a-gaggagaCGGTGATTGAACGGAAACCACTGGTGGAGGAAAGACCGAAGAGAG 997
|||| | |||||||||||| ||||||||||||||| ||||||||||||||| |||||||
Sbjct 932 AGGAGGAGGAGGAGACGGTGCTTGAACGGAAACCACCGGTGGAGGAAAGACCAAAGAGAG 991
Query 998 TAGAGGAAGTGACG-ATTGAATTGGAAAAAGTTACTAATTTGAGAGGGATGAAGAAGAGT 1056
| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 992 TGGAGGAAGTGA-GTGTTGAATCGGAAAAAGTTACTAATTTGAGAGGGATGAAGAAGAGT 1050
Query 1057 AAAGGGATAGGGATTCCCGGAGAGAGGAGAGGAATGCGAATGCCGGTGACTGCGACGCAT 1116
||||||||||||||||||||||||||||||||| || |||| | | ||||| ||
Sbjct 1051 AAAGGGATAGGGATTCCCGGAGAGAGGAGAGGAGTGAGAAT-----T---T-CGACGAAT 1101
Query 1117 TTGGCGAATGTATTCATTGAGCTTGATGATAATTTCTTGAAAGCTTCTGAAAGTGCTCAT 1176
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1102 TTGGTGAATGTATTCAATGAGCTTGATGATAGTTTCTTGAAAGCTTCTGAAAGTGCTCAT 1161
Query 1177 GATGTTTCTAAGATGCTTGAAGCTACTAGGCTCCATTACCATTCTAATTTTGCAGATAAC 1236
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1162 GAAGTTTCAAAGATGCTTGAAGCTACTAGGCTCCATTACCATTCTAATTTCGCCGATAAC 1221
Query 1237 CGAGGACATATTGATCACTCTGCTAGAGTGATGCGTGTAATTACATGGAATAGATCATTT 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1222 CGAGGACATATTGATCACTCTGCTAGAGTGATGCGTGTAATTACATGGAATAGATCGTTT 1281
Query 1297 AGAGGAATACCAAATGCTGATGATGGGAAAGATGATGTTGATTTGGAAGAGAATGAAACT 1356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1282 AGAGGAATACCAAATGCTGATGATGGGAAAGATGATGTTGATTTGGAAGACAATGAAACT 1341
Query 1357 CATGCTACTGTTCTTGACAAATTGCTAGCATGGGAAAAGAAGCTCTATGACGAAGTCAAG 1416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1342 CATGCTACTGTTCTTGACAAATTGCTAGCATGGGAAAAGAAGCTCTACGACGAAGTCAAG 1401
Query 1417 GCTGGCGAACTCATGAAAATCGAGTACCAGAAAAAGGTTGCTCATTTAAATCGGGTGAAG 1476
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GCGGGCGAACTCATGAAAATTGAGTACCAGAAAAAGGTTGCTCATTTAAATCGGGTGAAG 1461
Query 1477 AAACGAGGTGGCCACTCGGATTCATTAGAGAGAGCTAAAGCAGCAGTAAGTCATTTGCAT 1536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1462 AAACGAGGTGGCCACTCGGATTCATTAGAGAGAGCTAAAGCAGCAGTTAGTCATTTGCAT 1521
Query 1537 ACAAGATATATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAAATCAATCGTCTT 1596
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1522 ACTAGATACATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAGATCAATCGTCTT 1581
Query 1597 AGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGCGATGGGGAAGATGTGG 1656
| |||||||||||||||||||||||| ||| |||||| || ||||||||||||||||||
Sbjct 1582 CGAGATGAACAACTATACCTAAAGCTCATTCTCCTTGTCGAAGCGATGGGGAAGATGTGG 1641
Query 1657 GAAATGATGCAAATACATCATCAAAGACAAGCTGAGATCTCAAAGGTGTTGAGATCTCTA 1716
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1642 GAAATGATGCAAATGCATCATCAAAGACAAGCTGAGATCTCAAAGGTTTTGAAATCTCTA 1701
Query 1717 GATGTTTCACAAGCGGTGAAAGAAACAAATGATCATCATCACGAACGCACCATCCAGCTC 1776
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 GACGTTTCGCAATCGGTGAAAGAAACAAATGATCATCATCACGAACGCACCATCCAGCTC 1761
Query 1777 TTGGCAGTGGTTCAAGAATGGCACACGCAGTTTTGCAGGATGATAGATCATCAGAAAGAA 1836
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 TTGGCGGTGGTTCAAGAATGGCACACGCAGTTTTGCAGGATGATAGATCATCAGAAAGAA 1821
Query 1837 TACATAAAAGCACTTGGCGGATGGCTAAAGCTAAATCTCATCCCTATCGAAAGCACACTC 1896
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1822 TACATAAAAGCACTTGGCGGATGGCTAAGGCTAAATCTCATCCCTATCGAAAGCACACTC 1881
Query 1897 AAGGAGAAAGTATCTTCGCCTCCTCGAGTTCCCAATCCCGCAATCCAAAAACTCCTCCAC 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 AAGGAGAAAGTATCTTCGCCTCCTCGAGTTCCCAATCCCGCAATCCAAAAACTCCTCCAC 1941
Query 1957 GCTTGGTATGACCGTTTAGACAAAATCCCCGACGAAATGGCTAAAAGTGCCATAATCAAT 2016
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1942 GCTTGGTATGACCGTTTAGACAAAATCCCTGACGAAATGGCTAGAACTGCCATAATCAAT 2001
Query 2017 TTCGCAGCGGTTGTAAGCACGATAATGCAGCAGCAAGAAGACGAGATAAGTCTCAGAAAC 2076
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2002 TTCGCAGCGGTTGTAAGCACGATAATGCAGCAGCAAGAAGACGAGATAAATCTCAGAAAC 2061
Query 2077 AAATGCGAAGAGACAAGAAAAGAATTGGGAAGAAAAATTAGACAGTTTGAGGATTGGTAC 2136
|||||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 2062 AAATGCGAAGAGACAAAAAAAGAACTGGGAAGAAAAATCAGACAGTTTGAGGAGTGGTAC 2121
Query 2137 CACAAATACATCCAGAAGAGAGGACCGGAGGGGATGAATCCGGATG----A-A-GCGGAT 2190
| |||||||| ||||||||||||||||| |||||||||||||||| | | ||||||
Sbjct 2122 TATAAATACATGCAGAAGAGAGGACCGGAAGGGATGAATCCGGATGGGTCAGAAGCGGAT 2181
Query 2191 AACGATCATAATGATGAGGTCGCTG-TGAGGCAATTCAATGTAGAACAAATTaagaagag 2249
||||||||||| || |||||| || || ||||||| |||||||||||||||||||||||
Sbjct 2182 AACGATCATAAAGACGAGGTCA-TGGTGCGGCAATTTAATGTAGAACAAATTAAGAAGAG 2240
Query 2250 gttggaagaagaagaagaagCTTACCATAGACAAAGCCATCAAGTTAGAGAGAAGTCACT 2309
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2241 GTTGGAAGAAGAAGAAGAAGCTTACCACAGGCAAAGCCATCAAGTTAGAGAGAAGTCACT 2300
Query 2310 GGCTAGTCTTCGAACTCGCCTCCCCGAGCTTTTTCAGGCAATGTCCGAGGTTGCGTATTC 2369
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2301 GGCTAGTCTTCGAACTCGCCTCCCCGAGCTTTTTCAGGCAATGTACGAGGTTGCGTATTC 2360
Query 2370 ATGTTCGGATATGTATAGAGCTATAACGTATGCGAGTAAGCGGCAAAGCCAAAGCGAACG 2429
||||| ||||||||||||||| | |||||| || ||||||||||||||||||||||||
Sbjct 2361 GTGTTCAGATATGTATAGAGCTGTTACGTATTTGACTAAGCGGCAAAGCCAAAGCGAACG 2420
Query 2430 GCATCAGAAACCTAGCCAGGGACAGAGTTCGTAAGAACTAATGT---TTT-GGCTTTTGT 2485
|||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
Sbjct 2421 GCATCAGAAACCTAGCCAGGGACAGAGTTCGTAAGAACTAATGTAAGTTTTGGGTTTTAT 2480
Query 2486 AAGAAGGTTTCTTACATATGAGATTCATATAGTGTTTGATTCTTAAGGAACTGTTCTGTT 2545
|||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2481 AAGAAGGTTTGTTACATCTGAGATTCATA--GTGTTTGATTCTTAAGGAACTGTTATGTT 2538
Query 2546 GAGTAATAAGAAA-GTTGTGTATTGAAATAGAGTTGCATTTGT 2587
||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2539 GAGTAATAAGAAAAGTTGTGTATTGAAATAGAGTTGCATTTGT 2581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97587207690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5