BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52325.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474352 jgi|Araly1|474352|fgenesh2_kg.1__4306__AT1G52325.1         296    8e-80


> Ahg474352 jgi|Araly1|474352|fgenesh2_kg.1__4306__AT1G52325.1
Length=510

 Score =  296 bits (160),  Expect = 8e-80
 Identities = 220/248 (89%), Gaps = 7/248 (3%)
 Strand=Plus/Plus

Query  196  CTATTAAGAATTAAGCTTTTGAATGAAAAGCTTCAAGATCCAACCATGGAGGAGACATTC  255
            |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  265  CTATTAGGAATTAAGCTTTTGAATGAAAAGCTTCATGATCCAACCATGGAGGAGACGTTC  324

Query  256  GAGTCCATCTTCCCAAAGGACCATCGAAAAAACACGTTGTTCTCCATTATA-TTTTTCAC  314
            ||||||||||||||||||||||||  ||||||||||||||||||||| | | || |||||
Sbjct  325  GAGTCCATCTTCCCAAAGGACCATTTAAAAAACACGTTGTTCTCCATCA-ACTTCTTCAC  383

Query  315  CAAAATCGGCCTCGGTGGAATTACTCAAACACTAAGGCAGCTCATCGCCAAGCGCAAGGA  374
            |||||| |||||||| || || ||||||| |||||||||| |||||||||||||||||||
Sbjct  384  CAAAATTGGCCTCGGGGGCATCACTCAAAAACTAAGGCAGTTCATCGCCAAGCGCAAGGA  443

Query  375  AACTGATTCAGAGGA--CGAATTAA-GA-GATGAGATGGTGATGAAGCGTAGAAGAAAAA  430
            |||||||||||||||  | || |   || |||| || |  || |||||||||||||||||
Sbjct  444  AACTGATTCAGAGGAATC-AAGTGGTGATGATGGGACGAAGAGGAAGCGTAGAAGAAAAA  502

Query  431  GAGGTTGA  438
            ||||||||
Sbjct  503  GAGGTTGA  510


 Score =  206 bits (111),  Expect = 1e-52
 Identities = 128/136 (94%), Gaps = 2/136 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAAGTCTTGATTTCGAGGAAGCAGGGCATAAGCTGCTCAAGATAAGACTAGAACAA  60
            ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||
Sbjct  1    ATGTCAAGTCTTGATTTTGAGGAAGCAGGGCATAAACTGCTCAAAATCAGACTAGAACAA  60

Query  61   GGTCAAGGA-ATGGAGCTTTGTGTTATGGTGCTTGAATGTTGCACTGAGGAGAAAACTTA  119
            |||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTCAA-GAGAGGGAGCTATGTGTTATGGTGCTTGAATGTTGCACTGAGGAGAAAACTTA  119

Query  120  TCGTTCCTTCTATGTT  135
            ||||||||||||||||
Sbjct  120  TCGTTCCTTCTATGTT  135



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5