BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52325.1 Length=438 Score E Sequences producing significant alignments: (Bits) Value Ahg474352 jgi|Araly1|474352|fgenesh2_kg.1__4306__AT1G52325.1 296 8e-80 > Ahg474352 jgi|Araly1|474352|fgenesh2_kg.1__4306__AT1G52325.1 Length=510 Score = 296 bits (160), Expect = 8e-80 Identities = 220/248 (89%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 196 CTATTAAGAATTAAGCTTTTGAATGAAAAGCTTCAAGATCCAACCATGGAGGAGACATTC 255 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 265 CTATTAGGAATTAAGCTTTTGAATGAAAAGCTTCATGATCCAACCATGGAGGAGACGTTC 324 Query 256 GAGTCCATCTTCCCAAAGGACCATCGAAAAAACACGTTGTTCTCCATTATA-TTTTTCAC 314 |||||||||||||||||||||||| ||||||||||||||||||||| | | || ||||| Sbjct 325 GAGTCCATCTTCCCAAAGGACCATTTAAAAAACACGTTGTTCTCCATCA-ACTTCTTCAC 383 Query 315 CAAAATCGGCCTCGGTGGAATTACTCAAACACTAAGGCAGCTCATCGCCAAGCGCAAGGA 374 |||||| |||||||| || || ||||||| |||||||||| ||||||||||||||||||| Sbjct 384 CAAAATTGGCCTCGGGGGCATCACTCAAAAACTAAGGCAGTTCATCGCCAAGCGCAAGGA 443 Query 375 AACTGATTCAGAGGA--CGAATTAA-GA-GATGAGATGGTGATGAAGCGTAGAAGAAAAA 430 ||||||||||||||| | || | || |||| || | || ||||||||||||||||| Sbjct 444 AACTGATTCAGAGGAATC-AAGTGGTGATGATGGGACGAAGAGGAAGCGTAGAAGAAAAA 502 Query 431 GAGGTTGA 438 |||||||| Sbjct 503 GAGGTTGA 510 Score = 206 bits (111), Expect = 1e-52 Identities = 128/136 (94%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 1 ATGTCAAGTCTTGATTTCGAGGAAGCAGGGCATAAGCTGCTCAAGATAAGACTAGAACAA 60 ||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||| Sbjct 1 ATGTCAAGTCTTGATTTTGAGGAAGCAGGGCATAAACTGCTCAAAATCAGACTAGAACAA 60 Query 61 GGTCAAGGA-ATGGAGCTTTGTGTTATGGTGCTTGAATGTTGCACTGAGGAGAAAACTTA 119 |||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTCAA-GAGAGGGAGCTATGTGTTATGGTGCTTGAATGTTGCACTGAGGAGAAAACTTA 119 Query 120 TCGTTCCTTCTATGTT 135 |||||||||||||||| Sbjct 120 TCGTTCCTTCTATGTT 135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15796413846 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5