BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52330.2 Length=972 Score E Sequences producing significant alignments: (Bits) Value Ahg474353 jgi|Araly1|474353|fgenesh2_kg.1__4307__AT1G52330.1 918 0.0 Ahg474354 jgi|Araly1|474354|fgenesh2_kg.1__4308__AT1G52340.1 54.7 1e-06 > Ahg474353 jgi|Araly1|474353|fgenesh2_kg.1__4307__AT1G52330.1 Length=678 Score = 918 bits (497), Expect = 0.0 Identities = 565/596 (95%), Gaps = 12/596 (2%) Strand=Plus/Plus Query 1 ATCTCCTCTCTCATGAACAATGA-CGGTAGAAGAAGATCCT-AA--AGCAACTCCGTCAT 56 ||||||||||||||||||||||| ||| ||||||||| ||| || |||||||||||||| Sbjct 1 ATCTCCTCTCTCATGAACAATGACCGG-AGAAGAAGACCCTAAAGCAGCAACTCCGTCAT 59 Query 57 TACCAGACTACAAGCCTTTACCTTCATCATCAAGTCACGAGCTAAACGACGCCGTTCTGA 116 |||| ||||| |||||||||||||| | ||||||||||| | ||||||||||||||||| Sbjct 60 TACCGGACTATAAGCCTTTACCTTC--C-TCAAGTCACGATCAAAACGACGCCGTTCTGA 116 Query 117 TCTCATCACATCCTTCTCCTC-CCTCACGACGCCGTTTCATCATCTCTATATTTCTCATA 175 ||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||| Sbjct 117 TCTCATCACATTCTTCT-TTCACCTCCCGACGCCGTTTCATCATCTCTATATTTCTCATA 175 Query 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGCATCAAGATCATA 235 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGAATCAAGATCGTA 235 Query 236 CGGGTCAAAATTTCCCACGTGCACGTTCACCGCCGTCCGGTGCCGTCTATAGACATGACG 295 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 236 CGGGTCAAGATTTCCCACGTGCACGTTCACCGCCGTCCGGTTCCGTCTATAGACATGACG 295 Query 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355 Query 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415 Query 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTTGACGGCGTCATGGTG 475 |||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||| Sbjct 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTAGAGGGCGTTACGGTG 475 Query 476 TTTCCTGACGTCATTCATTTGATTCACGATTTAGCTAAAGGCTCCGTTGAATTTGACACC 535 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 476 TTTCCTGACGTCATTCATTTGATTCACGATTTGGCTAAAGGCTCCGTTGAATTTGACACC 535 Query 536 GTTACGGAGACTAACGGGAAAC-TTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGG 590 ||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||| Sbjct 536 GTTACGGAGACTAACGG-AAACCTTGGTGTTTGGTTCTTCCGTTTCCCTTTAAAGG 590 Score = 135 bits (73), Expect = 4e-31 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 745 AGGCAAAAGTGGCATGTGGGATTCTAGTAGA-TACTGTTAATCAGACAATTTCTCGTCAA 803 ||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| Sbjct 588 AGGCAAAAGTGGCATGTGGGATTCTAGTA-ATTACAGTTAATCAGACGATTTCTCGTCAA 646 Query 804 AGTTGTAGTCCTCTCTAATTCAAGAAACATCA 835 |||||||||||||||||||| |||| |||||| Sbjct 647 AGTTGTAGTCCTCTCTAATTTAAGACACATCA 678 > Ahg474354 jgi|Araly1|474354|fgenesh2_kg.1__4308__AT1G52340.1 Length=1009 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 944 AATGCTAAAAGTAACAATTAAAACCACAA 972 ||||||||||||||||||||||||||||| Sbjct 1008 AATGCTAAAAGTAACAATTAAAACCACAA 980 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36102402399 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5