BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52330.2
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474353 jgi|Araly1|474353|fgenesh2_kg.1__4307__AT1G52330.1 918 0.0
Ahg474354 jgi|Araly1|474354|fgenesh2_kg.1__4308__AT1G52340.1 54.7 1e-06
> Ahg474353 jgi|Araly1|474353|fgenesh2_kg.1__4307__AT1G52330.1
Length=678
Score = 918 bits (497), Expect = 0.0
Identities = 565/596 (95%), Gaps = 12/596 (2%)
Strand=Plus/Plus
Query 1 ATCTCCTCTCTCATGAACAATGA-CGGTAGAAGAAGATCCT-AA--AGCAACTCCGTCAT 56
||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||
Sbjct 1 ATCTCCTCTCTCATGAACAATGACCGG-AGAAGAAGACCCTAAAGCAGCAACTCCGTCAT 59
Query 57 TACCAGACTACAAGCCTTTACCTTCATCATCAAGTCACGAGCTAAACGACGCCGTTCTGA 116
|||| ||||| |||||||||||||| | ||||||||||| | |||||||||||||||||
Sbjct 60 TACCGGACTATAAGCCTTTACCTTC--C-TCAAGTCACGATCAAAACGACGCCGTTCTGA 116
Query 117 TCTCATCACATCCTTCTCCTC-CCTCACGACGCCGTTTCATCATCTCTATATTTCTCATA 175
||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 117 TCTCATCACATTCTTCT-TTCACCTCCCGACGCCGTTTCATCATCTCTATATTTCTCATA 175
Query 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGCATCAAGATCATA 235
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGAATCAAGATCGTA 235
Query 236 CGGGTCAAAATTTCCCACGTGCACGTTCACCGCCGTCCGGTGCCGTCTATAGACATGACG 295
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 236 CGGGTCAAGATTTCCCACGTGCACGTTCACCGCCGTCCGGTTCCGTCTATAGACATGACG 295
Query 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355
Query 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415
Query 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTTGACGGCGTCATGGTG 475
|||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTAGAGGGCGTTACGGTG 475
Query 476 TTTCCTGACGTCATTCATTTGATTCACGATTTAGCTAAAGGCTCCGTTGAATTTGACACC 535
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 476 TTTCCTGACGTCATTCATTTGATTCACGATTTGGCTAAAGGCTCCGTTGAATTTGACACC 535
Query 536 GTTACGGAGACTAACGGGAAAC-TTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGG 590
||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||
Sbjct 536 GTTACGGAGACTAACGG-AAACCTTGGTGTTTGGTTCTTCCGTTTCCCTTTAAAGG 590
Score = 135 bits (73), Expect = 4e-31
Identities = 86/92 (93%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 745 AGGCAAAAGTGGCATGTGGGATTCTAGTAGA-TACTGTTAATCAGACAATTTCTCGTCAA 803
||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||
Sbjct 588 AGGCAAAAGTGGCATGTGGGATTCTAGTA-ATTACAGTTAATCAGACGATTTCTCGTCAA 646
Query 804 AGTTGTAGTCCTCTCTAATTCAAGAAACATCA 835
|||||||||||||||||||| |||| ||||||
Sbjct 647 AGTTGTAGTCCTCTCTAATTTAAGACACATCA 678
> Ahg474354 jgi|Araly1|474354|fgenesh2_kg.1__4308__AT1G52340.1
Length=1009
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 944 AATGCTAAAAGTAACAATTAAAACCACAA 972
|||||||||||||||||||||||||||||
Sbjct 1008 AATGCTAAAAGTAACAATTAAAACCACAA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5