BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52340.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474354 jgi|Araly1|474354|fgenesh2_kg.1__4308__AT1G52340.1 1441 0.0
Ahg337389 jgi|Araly1|337389|fgenesh1_pg.C_scaffold_1003954 224 1e-57
> Ahg474354 jgi|Araly1|474354|fgenesh2_kg.1__4308__AT1G52340.1
Length=1009
Score = 1441 bits (780), Expect = 0.0
Identities = 921/988 (93%), Gaps = 13/988 (1%)
Strand=Plus/Plus
Query 108 GAGCTAAAGCTATTATGTCAACGAACACTGAATCTTCTTCTTATTCTTCTCTTCCTA--- 164
||| |||||||| |||||||||||||||| ||||||||| |||| |||||||||
Sbjct 29 GAG-TAAAGCTAATATGTCAACGAACACTCCATCTTCTTC---TTCTGCTCTTCCTACTT 84
Query 165 GTCAAAGGCTTTTGGGTAAAGTGGCATTGATCACTGGAGGAGCCACAGGGATAGGTGAGA 224
|| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 85 GTGACAGGCTTTTGGGTAAAGTGGCATTGATTACTGGAGGAGCCACTGGGATAGGTGAGA 144
Query 225 GCATTGTTCGTCTGTTCCACAAGCACGGTGCCAAA-GTCTGCATTGTTGATCTGCAAGAT 283
||||| ||||||| |||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 145 GCATTTTTCGTCTATTCCACAAGCACGGTG-CAAATGTCTGCATTGTTGATTTGCAAGAT 203
Query 284 GATCTCGGAGGTGAGGTGTGTAAAAGTCTGCTTCGTGGTGAGTCCAAGGAGACGGCTT-T 342
||||||||| ||||| ||||||||||||||| |||||| | | ||||||||||||| |
Sbjct 204 GATCTCGGAAACGAGGTATGTAAAAGTCTGCTTAGTGGTGGGACGAAGGAGACGGCTTGT 263
Query 343 TTTCATCCATGGCGATGTTAGAGTGGAAGATGACATTAGCAATGCGGTTGACTTTGCAGT 402
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 264 TTT-ATCCATGGAGATGTTAGAGTGGAAGACGACATTAGCAATGCGGTTGACTTTGCAGT 322
Query 403 CAAAAATTTTGGGACGCTTGATATACTTATCAACAATGCAGGATTATGTGGAGCACCGTG 462
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 323 CAAAAAGTTTGGGACGCTTGATATACTTATCAACAATGCGGGATTATGCGGAGCACCGTG 382
Query 463 CCCTGATATTCGTAATTATAGTTTGAGTGAGTTCGAGATGACCTTTGATGTGAATGTGAA 522
||||||||| || || ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 383 CCCTGATATCCGCAACAATAGTTTGAGTGAGTTCGAGAAGATCTTTGATGTGAATGTGAA 442
Query 523 AGGAGCTTTTCTAAGCATGAAACATGCAGCTCGTGTAATGATACCGGAGAAGAAAGGGTC 582
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 443 AGGAGCTTTTCTAAGCATGAAACATGCGGCTCGGGTAATGATACCGGAGAAGAAAGGGTC 502
Query 583 GATAGTTTCCTTATGTAGTGTGGGAGGTGTTGTGGGAGGCGTTGGTCCACATTCTTATGT 642
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 503 GATAGTTTCCTTATGTAGTGTGGGAGGTGTTATGGGAGGCATTGGTCCACATGCTTATGT 562
Query 643 TGGTTCCAAGCATGCTGTTCTAGGCTTGACTAGGAGTGTTGCAGCGGAGCTTGGACAGCA 702
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 563 CGGTTCCAAGCACGCTGTTCTAGGCTTGACTAGGAGTGTTGCAGCCGAGCTTGGACAGCA 622
Query 703 CGGGATACGTGTGAACTGTGTTTCGCCTTACGCGGTTGCAACTAAACTCGCTTTGGCTCA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CGGGATACGTGTGAACTGTGTTTCGCCTTACGCGGTTGCAACTAAACTCGCTTTGGCTCA 682
Query 763 TTTGCCGGAGGAAGAAAGAACGGAGGATGCATTTGTTGGTTTCAGGAATTTTGCTGCTGC 822
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 683 TTTGCCGGAGGAAGAAAGAACGGAAGATGCATTTGTGGGGTTCAGGAATTTTGCAGCTGC 742
Query 823 AAACGCGAATCTAAAAGGGGTGGAACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTT 882
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 743 AAACGCGAATCTAAAAGGGGTCGAACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTT 802
Query 883 TTTGGCTAGCGATGACTCGCGGTACATAAGCGGAGATAATTTGATGATTGATGGAGGATT 942
|||||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 803 TTTGGCAAGTGATGAATCGCGGTACATAAGCGGAGATAATCTGATGATTGATGGAGGATT 862
Query 943 CACTTGCACTAACCACTCCTTTAAAGTCTTCAGATGATGCATTTTGCTAAAGAATGTTGT 1002
||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||
Sbjct 863 CACTTGCACTAACCACTCCTTTAAAGTCTTCAGGTGATTCATTT-GCTAATGAATGTTGT 921
Query 1003 TTAATGTTTATTGTCCGCCAATTTATCATGTCTATCAAATAATTTAACTGTGGAGCTTAT 1062
|||||||||| |||| | ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 922 TTAATGTTTAGTGTC-GTCAATTTATCATGTCTCTTAAATAATTTAACTGTGGAGCTTAT 980
Query 1063 TGTGGTTTTAATTGTTACTTTTAGCATT 1090
||||||||||||||||||||||||||||
Sbjct 981 TGTGGTTTTAATTGTTACTTTTAGCATT 1008
> Ahg337389 jgi|Araly1|337389|fgenesh1_pg.C_scaffold_1003954
Length=504
Score = 224 bits (121), Expect = 1e-57
Identities = 136/143 (95%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 847 ACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTTTTTGGCTAGCGATGACTCGCGGTA 906
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 502 ACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTTTTTGGCGAGCGATGAATCGCGGTA 443
Query 907 CATAAGC-GGAGATAATTTGATGATTGATGGAGGATTCACTTGCACTAACCACTCCTTTA 965
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CATAAGCAGG-CATAATCTGATGATTGATGGAGGATTCACTTGCACTAACCACTCCTTTA 384
Query 966 AAGTCTTCAGATGATGCATTTTG 988
||||||||||||||| |||||||
Sbjct 383 AAGTCTTCAGATGATCCATTTTG 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5