BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52343.1

Length=849
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg337391 jgi|Araly1|337391|fgenesh1_pg.C_scaffold_1003956          1170    0.0  


> Ahg337391 jgi|Araly1|337391|fgenesh1_pg.C_scaffold_1003956
Length=750

 Score = 1170 bits (633),  Expect = 0.0
 Identities = 713/752 (95%), Gaps = 4/752 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGATGGATAGAGAAGAAAGGAGAAGAAGAATAATGGAAAGAGGATCAGATCGTCTA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGGTGATGGATAGAGAAGAAAGGAGAAGAAGAATAATGGAAAGAGGATCAGATCGTTTA  60

Query  61   GCTTTAATCACAGGCCAATTACATAATCTTGATCCTTCATCACCGTCGTCTTCTTCCTCA  120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   GCTTTAATCACAGGCCAATTACATAATCTTGATCCTTCGTCACCGTCGTCTTCTTCCTCA  120

Query  121  TCATCGGCTTCTCACAACCGCACATACAGCGAATCTTTCATGCCACAGACTAAATCTGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  121  TCATCGGCTTCTCACAACCGCACATACAGCGAATCTTTCATGCCACAAACGAAATCTGAT  180

Query  181  CATCATCAAATTCTAGAAAGCCCATCTCTTAAGTATCAATTCAAAGAGGAAGTAAAGGCA  240
            |||||||  |||  |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  CATCATCTTATTAAAGAAAGCCCATCTCTTAAGTATCAATTCAAAGAGGAAGTAAATGCA  240

Query  241  AGATCAGAAGAACCAAAACTCTCGACTGTTCTTCACAAACCCTTGAAAATTGAACCAACA  300
            |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct  241  AGATCAGAAGAACCAAAACTCTCGACTGTTCTTCACAAACCCTTAAAAAGTGAACCAACA  300

Query  301  AAACAAGAAGAAGCAACAAGATCACAAAAGAGTCAAAATCAACGACCTAT-ATGTTTCTT  359
            |||| |||||||||||||||||||  |||||||||||||||||||||||  | |||||| 
Sbjct  301  AAACCAGAAGAAGCAACAAGATCAGTAAAGAGTCAAAATCAACGACCTAGGA-GTTTCTG  359

Query  360  CAGCTCCAAGAAACTCAATGCTAGCATCATTAGCTCAGAAAGAACTCGGAGTTTAAGCTC  419
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  360  CAGCTCCAAGAAACTCAATGCTAGCATCATAAGCTCAGAAAGAACTCGGAGTTTAAGCTC  419

Query  420  TCTCACAATAGCCGCATTTGTGGTTTTACTCCCGAGATTGAACATTACAAGCTCAAACAC  479
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct  420  TCTCACAATAGCCGCGTTTGTGGTTTTACTCCCGAGATTGAACATTATAAGCTCAGACAC  479

Query  480  TATCTTAGCTTTGAGACCTCTTTGGTTGCTTATTCTTACAGATTGTGCCATAGTAATGTC  539
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  480  TATCTTAGCTTTGAGACCTCTTTGGTTGCTTATTCTTACAGATTGTGCTATTGTAATGTC  539

Query  540  TCATCTCACTACGGAAGCTTCTGGAGGAGGATTGAGCCATGAGATGGAAGAAGATGGAAA  599
            ||||||||| | |||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct  540  TCATCTCACCATGGAAACTTCTGGAGGAGGATTGAGCCATGAGATGGAAGATGAAGGAAA  599

Query  600  GGG-AAGAGATGGTAATAATGGAGAAAACTGGTCTGATGCAGAGAGGCTTCTAGAAAGAG  658
            | | || ||||||||||| ||||||||| |||||||||||||||| |||| |||||||||
Sbjct  600  GAGTAA-AGATGGTAATAGTGGAGAAAATTGGTCTGATGCAGAGAAGCTTTTAGAAAGAG  658

Query  659  GAGTTGTTGTGTATCAAGCTCTTCGTGGAATGTTCATAGATTGTAGTCTTTATATGgttg  718
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  659  GAGTTGTTGTGTATCAAGCTCTTCGTGGAATGTTCATAGATTGTAGTCTCTATATGGTGG  718

Query  719  ttgttgttatttttggagcctctcttttttaa  750
            | ||||||||||||||||||||||||||||||
Sbjct  719  TGGTTGTTATTTTTGGAGCCTCTCTTTTTTAA  750



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31413283608


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5