BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52370.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337393 jgi|Araly1|337393|fgenesh1_pg.C_scaffold_1003958 1338 0.0
> Ahg337393 jgi|Araly1|337393|fgenesh1_pg.C_scaffold_1003958
Length=813
Score = 1338 bits (724), Expect = 0.0
Identities = 785/814 (96%), Gaps = 5/814 (1%)
Strand=Plus/Plus
Query 123 ATGGCGGGTTGGCAGAAGAATTTACAGATTGTTATTCGTCAAGTTGGTAAAAGAGTTAAG 182
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1 ATGGCGGGTTGGCAGAGGAATTTACAGATTGTTATTCGTCAAGTTGGTACAAGAGTGAAG 60
Query 183 GACAGTCACATTTC--C-ACGGCAAATTACTCTTCCACACGGAATTTGGAATCCCCTTTC 239
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGTCACATTTCGACGACGGCAAATTACTCTTCCACACGGAATTTGGAATCCCCTTTC 120
Query 240 TCACAAGGTTATTTGCAGAGTCTCTTGAGATCAACCTATTCCTCAAGACCACTGTATTAT 299
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 121 TCACAAGGTTATTTGCAGAGTCTCTTGAGACCAACCCATTCCTCAAGACCACTGTATTAT 180
Query 300 CATCTACAACAACTGGGAATTTCTACCTCAAGACAATTGCAGGCGGGTGAGGAGCCTGTA 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CATCTACAACAACTGGGAATTTCTACCTCAAGACAATTGCAGGCGGGTGAAGAGCCTGTA 240
Query 360 TCATCACCTTTGTCATCTCCAGCTCTGCTGGGTAGTGGAAAAGAAGAAGAGCAGAAGATT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TCATCACCTTTGTCATCTCCAGCTCTGTTGGGTAGTGGAAAAGAAGAAGAGCAGAAGATT 300
Query 420 ATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCCATAAAGCAGAGTCCTAAGAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCCATAAAGCAGAGTCCTAAGAAG 360
Query 480 GTCAACTTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATGCAATTG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCAACCTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATGCAATTG 420
Query 540 CAGGTCACGGTCAAACGAGCTTCACAAACTGTGTACCGGGTTATACATGCTGCGCGGGCA 599
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 421 CAGGTCACGGTCAAACGGGCTTCACAAACCGTGTACCGGGTTATACACGCTGCCCGGGCA 480
Query 600 AATGCTACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCGTTTGTT 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATGCCACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCGTTTGTT 540
Query 660 GGGAAGGGACTCTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATAATA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAAGGGACTCTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATAATA 600
Query 720 TCAATACCCAGGTGTCGTCTAACAGTCATAGTCAGAGAGACGACTGCAGAGGAAGAAGCT 779
|||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 601 TCAATACCGAGGTGTCGTCTAACAGTGATAGTTAGAGAGACGACTCCAGAGGAAGAAGCT 660
Query 780 GAGATTGCAAGGCTGAAAGTTCACAATTTTAAGAAGCTAAACAAGCGGCAGAGACAGCTG 839
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 661 GAGATTGCAAGGCTGAAAGTTCACAATTTTAAGAAGCTAAGCAAGAGGCAGAGACAGCTT 720
Query 840 GTACCACACAAGTTGATCGAGACAAGTCCAATCTGGAACCGCAGAGGTACCAAAGGCAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTACCACACAAGTTGATCGAGACAAGTCCAATCTGGAACCGCAGAGGTACCAAAGGCAAT 780
Query 900 CA-CAGGTCATCTGAGTTGGTACCGTCTCACTAA 932
|| | |||| || ||| |||||||||||||||||
Sbjct 781 CATC-GGTCCTCAGAGCTGGTACCGTCTCACTAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5