BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52380.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923761 jgi|Araly1|923761|scaffold_105042.1 2194 0.0
> Ahg923761 jgi|Araly1|923761|scaffold_105042.1
Length=1363
Score = 2194 bits (1188), Expect = 0.0
Identities = 1304/1362 (96%), Gaps = 0/1362 (0%)
Strand=Plus/Plus
Query 145 ATTCTCTCATAACAATTCAAATGGGTGACTCGGAAAACGTTCAGCAACCTTCAAAAAAGA 204
||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCTCTCAAAACATTTCTAATGGGGGACTCGGAAAACGTTCAGCAACCTTCAAAAAAGA 60
Query 205 GAGGTGCCTTGAAGCAGCTGTCTCGTGATAATCCAGGTCTTGATGATGATGATGATTCAG 264
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GAGGTGCCTTGAAGCAGCTGTCTCGTGACAATCCAGGTCTTGATGATGATGATGATTCAG 120
Query 265 CTGAACTTGAGAGTGGAACTTTCAAGAAGGCCAGTGATGAGGTTTTGGCTAGTAGAAGAA 324
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CTGAACTTGCGAGTGGAACTTTCAAGAAGGCCAGTGATGAGGTATTGGCTAGTAGAAGAA 180
Query 325 TTGTCAGAGTTAAGCGCAAAGAGCCATCTGCTGCTCCAGTTGCAGCATCCAATCCATTTG 384
|| ||||||||||||||||||||||||| |||| || | ||| ||| ||||||||||||
Sbjct 181 TTTTCAGAGTTAAGCGCAAAGAGCCATCAACTGCGCCCGCTGCGGCACCCAATCCATTTG 240
Query 385 CTGGAATTCAGTTGGTCCCTACGACTGCACCTGCTTCAACCCCTGTGGGAACAAATGCAC 444
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGAATTCAGTTGGTCCCTACTTCTGCACCTGCTTCAACCCCTGTGGGAACAAATGCAC 300
Query 445 CTCTGGCTGAGTCAAAATTGGCTCCAGCTGAAGCAGTAGTTGAGGACAATCAAAAAGCAA 504
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCTGCCTGAGTCAAAATTGGCTCCAGCTGAAGCAGTAGTTGAGGACAATCAAAAAGCAA 360
Query 505 GTGATATTGAGGAGGGCGATGAAGTTGACAGTAAGAAGGTTGATGTCAAAGATGCTGTTG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 361 GTGATATTGAGGAGGGCGATGAAGTTGACAGTAAGAAGGTTGATGTCAAAGATCCTGCTG 420
Query 565 GGGAAGAGACTGAAAAGACTAAAGATAAGGATGATAATCATTGTGGAAAGAGTGCTGATG 624
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GGGAAGAGACTGAAAAGACTAAAGATGAGGATGATAATCATTGTGGAAAGAGTGCTGATG 480
Query 625 TCCAAGTTGCGGCTACAGAAGTAGCTCAGATGGTCTCATGTGACACAAACGTTTGCAACA 684
||||||||| ||| | ||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 481 ACCAAGTTGCTGCTGCGGAAGTAGCTCAGACGGTCTCATGTGATACAAACGTTAACAACA 540
Query 685 ACGCTGTTGAAGGAACAGACCAAACTGATTTTCCTCTTGAGAAGGATTCAGGAGGTGATC 744
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 541 ACGCTGTTGAAGGAACAGACCAAACTGAGGTTCCTCTTGAGAAGAATTCAGGAGGTGATC 600
Query 745 AGGCTGAGaaaaaagaaaaaGAAGGCAACGGAATTGAGGAAGCAGATAAGAATGGCGATA 804
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 601 AGGCTGAGAAAAACGAAAAAGAAGGCAACGGAATTGAAGAAGCAGATAAGAACGGCGATA 660
Query 805 ATGGTGCTTTCAGCTCATTCCAACAGCATTCAAGTAACAAAAACGCATTCACCGGACTTG 864
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGTGCTTTCAGTTCATTCCAACAGCATTCAAGTAACAAAAACGCATTCACCGGACTTG 720
Query 865 CCAGTACAGAGGCTTCAGGGTCTTCGTTCTCATTTGGTTTGGTTTCTCAGGATGGTTCAA 924
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CCAGTACAGAGGCTTCTGGGTCTTCGTTCTCATTTGGTTTGGTCTCTCAGGATGGTTCAA 780
Query 925 CTGGTACTGGGTCTCTCTTTGGCTTTGGCCTTCCAAGCAGCAATAGCTCTTCTATATTCG 984
||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct 781 CTGGTACCGGGTCTCTCTTTGGATTTGGCCTTCCAAGCAGCAATAACTCTTCTCTATTCG 840
Query 985 GTGCAACTGGATCGTCCATTATCAAGAAGAGTGAAGGTAGTGGGTTTCCGCCAAAGCAAG 1044
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 841 GTGCAACTGGATCTTCCATTATCAAGAAGACTGAGGGTAGTGGGTTTCCGCCAAAGCAAG 900
Query 1045 AGGTTTCCACAGAAACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTCGATCA 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 AGGTTTCCACAGAAACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTCGATTA 960
Query 1105 TGTTCGAATATCTTGATGGAGGATGGAAAGAGCGTGGAAAAGGAGAACTCAAGGTAAACG 1164
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 TGTTCGAATATCTTGATGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTAAACG 1020
Query 1165 TCTCCAGTAATGATGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGA 1224
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTCCAGTAATGGTGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGA 1080
Query 1225 TCTTAAACGCGAGTCTTTACCCAGAGATGAAACTTGCAAACATGGATAAAAAGGGAATCA 1284
||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 1081 TCTTAAACGCGAGTCTTTACCCAGAAATGAAACTTGCAGCCATGGATAAAAAAGGAATCA 1140
Query 1285 CATTCGCTTGTGTGAATAGTGTAAGCGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGA 1344
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 CATTCGCTTGTGTGAATAGTGTAAGTGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGA 1200
Query 1345 AGTTCAAAGACCCGACAATTGTTGAAGAGTTTCGTGTAGCCATTGACAAACACAAAGATA 1404
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1201 AGTTCAAAGACCCGACAATCGTGGAAGAGTTTCGTGTAGCCATTGACAAACACAAAGACA 1260
Query 1405 GTAAACCAATGGAGAAAGCAGCAGAAAAATCAGCTCTTCCTCTGAAGACACCTGAGAACT 1464
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1261 GTAAACCAATGGAGAAAGCAGCAGAAGAATCAGCTCTCCCTCTGAAGACACCTGAGAACT 1320
Query 1465 CTCCAACAGCTACAGATACTTGAAGaaaaggtaaaaagaaaa 1506
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTCCAACAGCTACAGATACTTGAAGAAAAGGTAAAAAGAAAA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5