BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52400.1 Length=1916 Score E Sequences producing significant alignments: (Bits) Value Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1 2687 0.0 Ahg923763 jgi|Araly1|923763|scaffold_105044.1 167 3e-40 > Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1 Length=1842 Score = 2687 bits (1455), Expect = 0.0 Identities = 1732/1862 (93%), Gaps = 34/1862 (2%) Strand=Plus/Plus Query 14 TTTCATCCTCAACAAATTCCTACACCAATATCTTTAGCTAGAGAGaaaaaaaGAGTGAGG 73 |||||| | |||||| ||||| ||||||||||| ||||||||||| || | | Sbjct 1 TTTCATTCACAACAATTTCCTCCACCAATATCTATAGCTAGAGAG-----AA-A---A-- 49 Query 74 AAACTAGAGAGAGAGACCACCCAATAATGGTGAGGTTCGAGAAGGTTCATTTAGTGTTAG 133 ||| ||||||||| | ||| |||| |||||||||||||||||||||| ||||||||||| Sbjct 50 AAA--AGAGAGAGA-A-CACTCAATGATGGTGAGGTTCGAGAAGGTTCCTTTAGTGTTAG 105 Query 134 GGTTAGCTCTGGTTCTAACTCTGGTCGGAGCTCCGACCAAAGCCCAAGGACCTGTTTGCG 193 ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 106 GGTTAGCTCTGGTTCTAACTCTGGTCGGAGCACCGACCAAAGCCGATGGACCTGTTTGCG 165 Query 194 GTGCAGGCCTGCCTGACAAATTTAGCAGATTAAACTTCCCTGAAGGCTTCATTTGGGGAA 253 | || || ||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 166 GAGCTGGTCTGCCTGGCAAATTTAGCAGATTAAACTTCCCTAAAGGCTTCATTTGGGGAA 225 Query 254 CCGCAACAGCAGCATTTCAGGTTGAAGGAGCTGTTAATGAAGGTTGCAGAGGTCCAAGCA 313 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 226 CGGCAACAGCAGCATTTCAGGTTGAAGGAGCTGTTGATGAAGGTTGCAGAGGTCCAAGCA 285 Query 314 TGTGGGATACTTTCACTAAGAAGTTCCCACATAGATGTGAAAATCATAACGCTGATGTTG 373 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 286 TGTGGGATACTTTCACTAAGCAGTTCCCAAATAGATGTGAAAATCATAACGCTGATGTTG 345 Query 374 CTGTGGATTTCTATCATCGTTACAAGGAAGATATCCAGTTGATGAAAGACCTTAACACTG 433 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 346 CTGTGGATTTCTACCATCGTTACAAGGAAGATATCCAGTTGATGAAGGACCTTAACACTG 405 Query 434 ATGCTTTTAGACTTTCTATTGCGTGGCCCAGAATATTCCCCCATGGAAGGATGTCTAAGG 493 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 ATGGTTTTAGACTTTCTATTGCGTGGCCCAGAATATTCCCCCATGGAAGGATGTCTAAGG 465 Query 494 GAATAAGCAAAGTGGGAGTCCAATTCTACCACGACCTCATCGATGAGCTTCTCAAAAACA 553 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 GAATAAGCAAAGTAGGAGTCCAATTCTACCACGACCTCATCGATGAGCTTCTCAAAAACA 525 Query 554 ATATAATACCATTAGTTACAGTCTTTCATTGGGATACTCCCCAAGACTTGGAAGATGAAT 613 ||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 526 ATATAATACCACTAGTAACAGTCTTTCACTGGGATACTCCTCAAGACTTGGAAGATGAAT 585 Query 614 ATGGTGGTTTCTTAAGTGGTCGCATCGTGCAAGATTTTACCGAATATGCGAATTTCACTT 673 ||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 586 ATGGTGGCTTCTTAAGTGGTCGCATCGTGCAAGATTTTACGGAATTTGCGAATTTCACTT 645 Query 674 TCCACGAATATGGACACAAAGTGAAACATTGGATCACATTTAACGAGCCATGGGTGTTTA 733 |||| ||||| |||||||| || ||| ||||||||||||| || |||||||||||||||| Sbjct 646 TCCATGAATACGGACACAAGGTAAAAAATTGGATCACATTCAATGAGCCATGGGTGTTTA 705 Query 734 GTCGTGCCGGTTACGACAACGGAAAGAAAGCTCCGGGACGTTGTTCGCCGTACATCCCCG 793 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 706 GTCGTGCCGGTTACGACAACGGAAAGAAAGCTCCGGGACGTTGTTCACCATATATCCCCG 765 Query 794 GTTATGGACAGCATTGTCAGGATGGGCGGTCTGGATACGAAGCTTATCAAGTCAGTCACA 853 |||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 766 GTTATGGAGAGCTTTGTCAAGATGGACGGTCTGGATACGAAGCTTATCAAGTCAGTCACA 825 Query 854 ACTTACTCTTGTCGCATGCTTACGCTGTTGACGCATTCAGAAACTGCAAACAGTGTGCTG 913 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 826 ACTTACTCTTGTCGCATGCTTACGCCGTTGACGCATTCAGAAAATGCAAACAGTGTGCTG 885 Query 914 GAGGTAAAATTGGAATTGCACACAGTCCAGCTTGGTTCGAACCACAAGACCTTGAGCATG 973 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 GAGGTAAAATTGGAATTGCACACAGTCCAGCTTGGTTCGAACCACAAGACCTTGAGCATG 945 Query 974 TTGGAGGTTCCATTGAACGTGTGCTTGATTTCATCCTAGGATGGCATTTGGCTCCAACAA 1033 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 946 TTGGAGGTGCCATTGAACGTGTGCTTGATTTCATCCTGGGATGGCATTTGGCTCCAACAA 1005 Query 1034 CTTATGGAGATTATCCACAATCGATGAAGGATCGTGTCGGTCATAGATTGCCAAAATTCA 1093 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 1006 CTTATGGAGATTATCCACAATCCATGAAAGATCGTGTCGGTCATAGATTGCCAAAATTTA 1065 Query 1094 CAGAAGCTGAGAAGAAGTTGCTAAAGGGTTCTACAGATTACGTAGGAATGAATTACTATA 1153 |||||||||||||||| ||||| |||| |||||||||||| |||||||||||||| |||| Sbjct 1066 CAGAAGCTGAGAAGAAATTGCTGAAGGATTCTACAGATTATGTAGGAATGAATTATTATA 1125 Query 1154 CTTCAGTGTTTGCAAAAGAAATTAGCCCTGATCCTAAGAGTCCGAGTTGGACGACTGATT 1213 |||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||| Sbjct 1126 CTTCAGTGTTTGCAAAAGAAATTAACCCTAATCCTAAGAGTCCGAGTTGGACTAGTGATT 1185 Query 1214 CTCTTGTTGATTGGGATAGCAAGAGTGTGGATGGATACAAAATTGGTAGCAAGCCGTTTA 1273 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1186 CTCTTGTTGATTGGGATAGCAAGAGTGTGGACGGATACAAAATTGGTAGCAAGCCGTTTA 1245 Query 1274 ATGGTAAACTGGATGTGTATTCAAAAGGTTTGAGATACCTTTTGAAGTATATTAAGGATA 1333 | |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1246 ACGGTAAACTCGATGTGTATTCCAAAGGAATGAGATACCTTTTGAAGTATATTAAGGATA 1305 Query 1334 ACTATGGCGACCCAGAAGTTATCATTGCCGAGAATGGATACGGAGAAGACCTTGGAGAGA 1393 ||||||||||||||||| |||||||| |||||||||| |||||||| || |||||||||| Sbjct 1306 ACTATGGCGACCCAGAAATTATCATTACCGAGAATGGTTACGGAGAGGATCTTGGAGAGA 1365 Query 1394 AGCACAATGACGTAAACTTTGGGACACAAGATCACAACAGAAAATATTATATCCAAAGGC 1453 |||||||||||||| | ||||||||||||||||||||||| ||||||||| |||| |||| Sbjct 1366 AGCACAATGACGTAGATTTTGGGACACAAGATCACAACAGGAAATATTATCTCCAGAGGC 1425 Query 1454 ATCTCTTGAGTATGCACGACGCCATTTG-CAAGGACAAAGTGAACGTTACGGGATACTTT 1512 ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||| Sbjct 1426 ATCTCTTGAGTATGCACGAAGCCATTTGCCAA-GACAAAGTGAACGTTACGGGATA-TTT 1483 Query 1513 -GTGTGGTCTTTGATGGACAACTTTGAGTGGCAAGATGGGTACAAGGCGAGGTTCGGACT 1571 |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || Sbjct 1484 CGTGTGGTCGTTGATGGACAACTTCGAGTGGCAAGATGGGTACAAGGCGAGATTCGGGCT 1543 Query 1572 TTACTACATCGATTTCCAGAACAACT-TGACCCGTCACCAAAAAGTTTCGGGCAAATGGT 1630 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1544 TTACTACATCGATTTCCAGAACAA-TCTGACCCGTCACCAAAAAGTTTCGGGCAAATGGT 1602 Query 1631 ATTCCGAATTCCTCAAACC-ACAGTTTCCAACCTCCAAGCTGAGGGAAGAACTCTAGATG 1689 |||| || |||||| |||| | | |||||||||||||||||||||||||||||||||||| Sbjct 1603 ATTCGGATTTCCTCGAACCGA-AATTTCCAACCTCCAAGCTGAGGGAAGAACTCTAGATG 1661 Query 1690 ATCAAGAATCCTATCGGGACAAAATAATTGAGTACAAGAGTCTTGAAGATGTTGTTGAGG 1749 |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| Sbjct 1662 ATCAAGAATCCTATCGGGACAAAATAATTGAGTACAAGAGTCTTCAAAATGTCCTTGAGG 1721 Query 1750 ATAATATCAGTTTGTGTGTTCTATGGATCGT-TTTCATC-T----A-C---CGGTCCTTC 1799 ||| ||||||||||||||||||||||||||| ||| ||| | | | |||| |||| Sbjct 1722 ATACTATCAGTTTGTGTGTTCTATGGATCGTGTTT-ATCGTTTTCATCTTTCGGTTCTTC 1780 Query 1800 CTATGTTAGAAGGACTTGTGAGTTGTTCGAGTTTTAATAATATCAATAAATGTCTTCTTT 1859 ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1781 CTATGTTAGAAGGACCTGTGAGTTGTTCGAGTTTAAATCGTATCAATAAATGTCTTCTTT 1840 Query 1860 TT 1861 || Sbjct 1841 TT 1842 > Ahg923763 jgi|Araly1|923763|scaffold_105044.1 Length=403 Score = 167 bits (90), Expect = 3e-40 Identities = 154/184 (84%), Gaps = 7/184 (4%) Strand=Plus/Plus Query 726 GGTGTTTAGTCGTGCCGGTTACGACAAC--GGAAAGAAAGCTCCGGGACGTTGTTCGCCG 783 ||||||||||||||| ||||| ||| || | ||| ||| |||| ||||||||||| ||| Sbjct 1 GGTGTTTAGTCGTGCTGGTTATGAC-ACTAGAAAAAAAAACTCCCGGACGTTGTTCACCG 59 Query 784 TACATCCCCG-GT-TATGGACAGCATTGTCAGGATGGGCGGTCTGGATACGAAGCTTATC 841 ||||| | || ||||||| || ||||| ||||| |||||||||||||||||||||| Sbjct 60 TACAT--AAGAGTATATGGACCTCAATGTCAAGATGGACGGTCTGGATACGAAGCTTATC 117 Query 842 AAGTCAGTCACAACTTACTCTTGTCGCATGCTTACGCTGTTGACGCATTCAGAAACTGCA 901 ||||||||||||||||||||||| | |||||| | || ||||| || |||||||| | || Sbjct 118 AAGTCAGTCACAACTTACTCTTGGCTCATGCTGAAGCCGTTGATGCGTTCAGAAAATACA 177 Query 902 AACA 905 |||| Sbjct 178 AACA 181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71990563050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5