BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52400.1
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1 2687 0.0
Ahg923763 jgi|Araly1|923763|scaffold_105044.1 167 3e-40
> Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1
Length=1842
Score = 2687 bits (1455), Expect = 0.0
Identities = 1732/1862 (93%), Gaps = 34/1862 (2%)
Strand=Plus/Plus
Query 14 TTTCATCCTCAACAAATTCCTACACCAATATCTTTAGCTAGAGAGaaaaaaaGAGTGAGG 73
|||||| | |||||| ||||| ||||||||||| ||||||||||| || | |
Sbjct 1 TTTCATTCACAACAATTTCCTCCACCAATATCTATAGCTAGAGAG-----AA-A---A-- 49
Query 74 AAACTAGAGAGAGAGACCACCCAATAATGGTGAGGTTCGAGAAGGTTCATTTAGTGTTAG 133
||| ||||||||| | ||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 50 AAA--AGAGAGAGA-A-CACTCAATGATGGTGAGGTTCGAGAAGGTTCCTTTAGTGTTAG 105
Query 134 GGTTAGCTCTGGTTCTAACTCTGGTCGGAGCTCCGACCAAAGCCCAAGGACCTGTTTGCG 193
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 106 GGTTAGCTCTGGTTCTAACTCTGGTCGGAGCACCGACCAAAGCCGATGGACCTGTTTGCG 165
Query 194 GTGCAGGCCTGCCTGACAAATTTAGCAGATTAAACTTCCCTGAAGGCTTCATTTGGGGAA 253
| || || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 166 GAGCTGGTCTGCCTGGCAAATTTAGCAGATTAAACTTCCCTAAAGGCTTCATTTGGGGAA 225
Query 254 CCGCAACAGCAGCATTTCAGGTTGAAGGAGCTGTTAATGAAGGTTGCAGAGGTCCAAGCA 313
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 226 CGGCAACAGCAGCATTTCAGGTTGAAGGAGCTGTTGATGAAGGTTGCAGAGGTCCAAGCA 285
Query 314 TGTGGGATACTTTCACTAAGAAGTTCCCACATAGATGTGAAAATCATAACGCTGATGTTG 373
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 286 TGTGGGATACTTTCACTAAGCAGTTCCCAAATAGATGTGAAAATCATAACGCTGATGTTG 345
Query 374 CTGTGGATTTCTATCATCGTTACAAGGAAGATATCCAGTTGATGAAAGACCTTAACACTG 433
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 346 CTGTGGATTTCTACCATCGTTACAAGGAAGATATCCAGTTGATGAAGGACCTTAACACTG 405
Query 434 ATGCTTTTAGACTTTCTATTGCGTGGCCCAGAATATTCCCCCATGGAAGGATGTCTAAGG 493
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ATGGTTTTAGACTTTCTATTGCGTGGCCCAGAATATTCCCCCATGGAAGGATGTCTAAGG 465
Query 494 GAATAAGCAAAGTGGGAGTCCAATTCTACCACGACCTCATCGATGAGCTTCTCAAAAACA 553
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GAATAAGCAAAGTAGGAGTCCAATTCTACCACGACCTCATCGATGAGCTTCTCAAAAACA 525
Query 554 ATATAATACCATTAGTTACAGTCTTTCATTGGGATACTCCCCAAGACTTGGAAGATGAAT 613
||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 526 ATATAATACCACTAGTAACAGTCTTTCACTGGGATACTCCTCAAGACTTGGAAGATGAAT 585
Query 614 ATGGTGGTTTCTTAAGTGGTCGCATCGTGCAAGATTTTACCGAATATGCGAATTTCACTT 673
||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 586 ATGGTGGCTTCTTAAGTGGTCGCATCGTGCAAGATTTTACGGAATTTGCGAATTTCACTT 645
Query 674 TCCACGAATATGGACACAAAGTGAAACATTGGATCACATTTAACGAGCCATGGGTGTTTA 733
|||| ||||| |||||||| || ||| ||||||||||||| || ||||||||||||||||
Sbjct 646 TCCATGAATACGGACACAAGGTAAAAAATTGGATCACATTCAATGAGCCATGGGTGTTTA 705
Query 734 GTCGTGCCGGTTACGACAACGGAAAGAAAGCTCCGGGACGTTGTTCGCCGTACATCCCCG 793
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 706 GTCGTGCCGGTTACGACAACGGAAAGAAAGCTCCGGGACGTTGTTCACCATATATCCCCG 765
Query 794 GTTATGGACAGCATTGTCAGGATGGGCGGTCTGGATACGAAGCTTATCAAGTCAGTCACA 853
|||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 766 GTTATGGAGAGCTTTGTCAAGATGGACGGTCTGGATACGAAGCTTATCAAGTCAGTCACA 825
Query 854 ACTTACTCTTGTCGCATGCTTACGCTGTTGACGCATTCAGAAACTGCAAACAGTGTGCTG 913
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 826 ACTTACTCTTGTCGCATGCTTACGCCGTTGACGCATTCAGAAAATGCAAACAGTGTGCTG 885
Query 914 GAGGTAAAATTGGAATTGCACACAGTCCAGCTTGGTTCGAACCACAAGACCTTGAGCATG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GAGGTAAAATTGGAATTGCACACAGTCCAGCTTGGTTCGAACCACAAGACCTTGAGCATG 945
Query 974 TTGGAGGTTCCATTGAACGTGTGCTTGATTTCATCCTAGGATGGCATTTGGCTCCAACAA 1033
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 946 TTGGAGGTGCCATTGAACGTGTGCTTGATTTCATCCTGGGATGGCATTTGGCTCCAACAA 1005
Query 1034 CTTATGGAGATTATCCACAATCGATGAAGGATCGTGTCGGTCATAGATTGCCAAAATTCA 1093
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 1006 CTTATGGAGATTATCCACAATCCATGAAAGATCGTGTCGGTCATAGATTGCCAAAATTTA 1065
Query 1094 CAGAAGCTGAGAAGAAGTTGCTAAAGGGTTCTACAGATTACGTAGGAATGAATTACTATA 1153
|||||||||||||||| ||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct 1066 CAGAAGCTGAGAAGAAATTGCTGAAGGATTCTACAGATTATGTAGGAATGAATTATTATA 1125
Query 1154 CTTCAGTGTTTGCAAAAGAAATTAGCCCTGATCCTAAGAGTCCGAGTTGGACGACTGATT 1213
|||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||
Sbjct 1126 CTTCAGTGTTTGCAAAAGAAATTAACCCTAATCCTAAGAGTCCGAGTTGGACTAGTGATT 1185
Query 1214 CTCTTGTTGATTGGGATAGCAAGAGTGTGGATGGATACAAAATTGGTAGCAAGCCGTTTA 1273
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1186 CTCTTGTTGATTGGGATAGCAAGAGTGTGGACGGATACAAAATTGGTAGCAAGCCGTTTA 1245
Query 1274 ATGGTAAACTGGATGTGTATTCAAAAGGTTTGAGATACCTTTTGAAGTATATTAAGGATA 1333
| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1246 ACGGTAAACTCGATGTGTATTCCAAAGGAATGAGATACCTTTTGAAGTATATTAAGGATA 1305
Query 1334 ACTATGGCGACCCAGAAGTTATCATTGCCGAGAATGGATACGGAGAAGACCTTGGAGAGA 1393
||||||||||||||||| |||||||| |||||||||| |||||||| || ||||||||||
Sbjct 1306 ACTATGGCGACCCAGAAATTATCATTACCGAGAATGGTTACGGAGAGGATCTTGGAGAGA 1365
Query 1394 AGCACAATGACGTAAACTTTGGGACACAAGATCACAACAGAAAATATTATATCCAAAGGC 1453
|||||||||||||| | ||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 1366 AGCACAATGACGTAGATTTTGGGACACAAGATCACAACAGGAAATATTATCTCCAGAGGC 1425
Query 1454 ATCTCTTGAGTATGCACGACGCCATTTG-CAAGGACAAAGTGAACGTTACGGGATACTTT 1512
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||
Sbjct 1426 ATCTCTTGAGTATGCACGAAGCCATTTGCCAA-GACAAAGTGAACGTTACGGGATA-TTT 1483
Query 1513 -GTGTGGTCTTTGATGGACAACTTTGAGTGGCAAGATGGGTACAAGGCGAGGTTCGGACT 1571
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1484 CGTGTGGTCGTTGATGGACAACTTCGAGTGGCAAGATGGGTACAAGGCGAGATTCGGGCT 1543
Query 1572 TTACTACATCGATTTCCAGAACAACT-TGACCCGTCACCAAAAAGTTTCGGGCAAATGGT 1630
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1544 TTACTACATCGATTTCCAGAACAA-TCTGACCCGTCACCAAAAAGTTTCGGGCAAATGGT 1602
Query 1631 ATTCCGAATTCCTCAAACC-ACAGTTTCCAACCTCCAAGCTGAGGGAAGAACTCTAGATG 1689
|||| || |||||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATTCGGATTTCCTCGAACCGA-AATTTCCAACCTCCAAGCTGAGGGAAGAACTCTAGATG 1661
Query 1690 ATCAAGAATCCTATCGGGACAAAATAATTGAGTACAAGAGTCTTGAAGATGTTGTTGAGG 1749
|||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 1662 ATCAAGAATCCTATCGGGACAAAATAATTGAGTACAAGAGTCTTCAAAATGTCCTTGAGG 1721
Query 1750 ATAATATCAGTTTGTGTGTTCTATGGATCGT-TTTCATC-T----A-C---CGGTCCTTC 1799
||| ||||||||||||||||||||||||||| ||| ||| | | | |||| ||||
Sbjct 1722 ATACTATCAGTTTGTGTGTTCTATGGATCGTGTTT-ATCGTTTTCATCTTTCGGTTCTTC 1780
Query 1800 CTATGTTAGAAGGACTTGTGAGTTGTTCGAGTTTTAATAATATCAATAAATGTCTTCTTT 1859
||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1781 CTATGTTAGAAGGACCTGTGAGTTGTTCGAGTTTAAATCGTATCAATAAATGTCTTCTTT 1840
Query 1860 TT 1861
||
Sbjct 1841 TT 1842
> Ahg923763 jgi|Araly1|923763|scaffold_105044.1
Length=403
Score = 167 bits (90), Expect = 3e-40
Identities = 154/184 (84%), Gaps = 7/184 (4%)
Strand=Plus/Plus
Query 726 GGTGTTTAGTCGTGCCGGTTACGACAAC--GGAAAGAAAGCTCCGGGACGTTGTTCGCCG 783
||||||||||||||| ||||| ||| || | ||| ||| |||| ||||||||||| |||
Sbjct 1 GGTGTTTAGTCGTGCTGGTTATGAC-ACTAGAAAAAAAAACTCCCGGACGTTGTTCACCG 59
Query 784 TACATCCCCG-GT-TATGGACAGCATTGTCAGGATGGGCGGTCTGGATACGAAGCTTATC 841
||||| | || ||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 60 TACAT--AAGAGTATATGGACCTCAATGTCAAGATGGACGGTCTGGATACGAAGCTTATC 117
Query 842 AAGTCAGTCACAACTTACTCTTGTCGCATGCTTACGCTGTTGACGCATTCAGAAACTGCA 901
||||||||||||||||||||||| | |||||| | || ||||| || |||||||| | ||
Sbjct 118 AAGTCAGTCACAACTTACTCTTGGCTCATGCTGAAGCCGTTGATGCGTTCAGAAAATACA 177
Query 902 AACA 905
||||
Sbjct 178 AACA 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71990563050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5